Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

23454689 .. 23454970

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGAGTCTTCAGGCACTTGACAAAGATGGAACACTGACACCTCTAGGGAGGGCCATGGCTCTTTACCCTATGATTCCTCGTCACTCTAGGATGCTCACTGTTATTCAAGTCTTGATTAAGAAGAAGAGTTTCAGAGCTAATTTAGTGCTAGCATGCGCAGTTGCAGCTGCTGCTGCTTTGAGTTTGTCAAATCCTTTTGCTAGACAGTTTGAAGATAGCCATAAAAAAAAAAAAAGCCATGAGTTAAATGAGGACGGGAACATTATAGTTATACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

10.17

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_HA2	PF04408	2 - 24	6.8e-08	Helicase associated domain (HA2), winged-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	110, 215
AluBI	AGCT	2 cut(s)	140, 170
AluI	AGCT	2 cut(s)	140, 170
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	167, 170, 173, 176
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	54
AsuNHI	GCTAGC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	2
BbvI	GCAGC	4 cut(s)	157, 160, 163, 179
BccI	CCATC	1 cut(s)	23
BfaI	CTAG	5 cut(s)	47, 90, 152, 204, 280
BisI	GCNGC	4 cut(s)	168, 171, 174, 177
BlsI	GCNGC	4 cut(s)	169, 172, 175, 178
BmgT120I	GGNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	99
BseXI	GCAGC	4 cut(s)	157, 160, 163, 179
BshFI	GGCC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	103, 210
Bst6I	CTCTTC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	153, 157
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 173, 176
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	157, 160, 163, 179
BstV2I	GAAGAC	1 cut(s)	2
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	35, 99
Cac8I	GCNNGC	2 cut(s)	153, 157
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	3 cut(s)	58, 156, 242
CviJI	RGCY	6 cut(s)	56, 62, 140, 170, 222, 240
CviKI_1	RGCY	6 cut(s)	56, 62, 140, 170, 222, 240
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	61, 159, 245
FaiI	YATR	7 cut(s)	59, 74, 157, 225, 243, 269, 275
FatI	CATG	3 cut(s)	57, 155, 241
Fnu4HI	GCNGC	4 cut(s)	168, 171, 174, 177
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	4 cut(s)	168, 171, 174, 177
FspBI	CTAG	5 cut(s)	47, 90, 152, 204, 280
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	168, 171, 174, 177
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	61, 159, 245
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	7, 76
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	103, 210
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 173, 176
Hsp92II	CATG	3 cut(s)	61, 159, 245
HspAI	GCGC	1 cut(s)	159
Lsp1109I	GCAGC	4 cut(s)	157, 160, 163, 179
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	5 cut(s)	47, 90, 152, 204, 280
MaeIII	GTNAC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	16, 136, 139, 227
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	45, 54, 90, 247
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	120, 248
MspA1I	CMGCKG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	167, 173, 176
NcoI	CCATGG	1 cut(s)	57
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	61, 159, 245
NmuCI	GTSAC	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	160
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	169, 172, 175, 178
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	120, 248
SatI	GCNGC	4 cut(s)	168, 171, 174, 177
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	16
SetI	ASST	3 cut(s)	46, 142, 172
SfaNI	GCATC	1 cut(s)	84
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	1 cut(s)	142
SspMI	CTAG	5 cut(s)	47, 90, 152, 204, 280
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	103, 210
TasI	AATT	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	120, 248
Tru9I	TTAA	2 cut(s)	120, 248
TscAI	CASTG	2 cut(s)	42, 106
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	167, 170, 173, 176
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	42, 106
XceI	RCATGY	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	5 cut(s)	47, 90, 152, 204, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.