ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 219 - 401 | 2.9e-06 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 637 - 726 | 9.6e-11 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 789 - 815 | 1.7e-06 | Helicase associated domain (HA2), winged-helix |
| OB_NTP_bind | PF07717 | 997 - 1072 | 1.2e-17 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
| DHX37_C | PF23362 | 1141 - 1218 | 1.1e-15 | DEAH helicase DHX37 C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 644, 1004, 2508 |
| Acc36I | ACCTGC | 1 cut(s) | 3074 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 458, 3305 |
| AccBSI | CCGCTC | 1 cut(s) | 1027 |
| AccI | GTMKAC | 1 cut(s) | 1284 |
| AccII | CGCG | 3 cut(s) | 702, 870, 3660 |
| AccIII | TCCGGA | 2 cut(s) | 3328, 3597 |
| AciI | CCGC | 8 cut(s) | 589, 702, 1027, 1883, 2194, 2761, 2895, 3097 |
| AclWI | GGATC | 6 cut(s) | 357, 483, 569, 2371, 2905, 2918 |
| AcoI | YGGCCR | 1 cut(s) | 2004 |
| AcsI | RAATTY | 6 cut(s) | 682, 1350, 2629, 2713, 2900, 3616 |
| AcuI | CTGAAG | 4 cut(s) | 630, 1193, 1776, 2529 |
| AcvI | CACGTG | 1 cut(s) | 1067 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 458, 1373, 2270, 2648, 3305 |
| AflIII | ACRYGT | 4 cut(s) | 6, 375, 868, 1066 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3100 |
| AjiI | CACGTC | 1 cut(s) | 378 |
| AjnI | CCWGG | 4 cut(s) | 969, 1903, 2038, 2179 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 744, 776 |
| AleI | CACNNNNGTG | 1 cut(s) | 3540 |
| Alw21I | GWGCWC | 2 cut(s) | 1040, 2641 |
| Alw26I | GTCTC | 3 cut(s) | 701, 780, 3418 |
| AlwI | GGATC | 6 cut(s) | 357, 483, 569, 2371, 2905, 2918 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 200, 2180 |
| Aor13HI | TCCGGA | 2 cut(s) | 3328, 3597 |
| AoxI | GGCC | 7 cut(s) | 422, 669, 2004, 2177, 2424, 2983, 2997 |
| ApoI | RAATTY | 6 cut(s) | 682, 1350, 2629, 2713, 2900, 3616 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 220, 252 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1060, 1542, 1786, 3086, 3495 |
| AspLEI | GCGC | 1 cut(s) | 3036 |
| AspS9I | GGNCC | 3 cut(s) | 2177, 2997, 3308 |
| AsuC2I | CCSGG | 1 cut(s) | 2996 |
| AsuHPI | GGTGA | 7 cut(s) | 887, 986, 1676, 1721, 2663, 2689, 2909 |
| AvaII | GGWCC | 1 cut(s) | 3308 |
| BalI | TGGCCA | 1 cut(s) | 2006 |
| BamHI | GGATCC | 1 cut(s) | 2910 |
| BanII | GRGCYC | 1 cut(s) | 211 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 128, 160 |
| BbrPI | CACGTG | 1 cut(s) | 1067 |
| BbsI | GAAGAC | 3 cut(s) | 1215, 2598, 3079 |
| Bbv12I | GWGCWC | 2 cut(s) | 1040, 2641 |
| BceAI | ACGGC | 4 cut(s) | 2006, 3418, 3525, 3650 |
| BciT130I | CCWGG | 4 cut(s) | 971, 1905, 2040, 2181 |
| BciVI | GTATCC | 1 cut(s) | 803 |
| BclI | TGATCA | 1 cut(s) | 2679 |
| BcnI | CCSGG | 1 cut(s) | 2996 |
| BcoDI | GTCTC | 3 cut(s) | 701, 780, 3418 |
| BfaI | CTAG | 6 cut(s) | 840, 1269, 1829, 1842, 2417, 2528 |
| BfmI | CTRYAG | 3 cut(s) | 1143, 1944, 2550 |
| BfuAI | ACCTGC | 1 cut(s) | 3074 |
| BfuI | GTATCC | 1 cut(s) | 803 |
| BlpI | GCTNAGC | 1 cut(s) | 1953 |
| BmcAI | AGTACT | 2 cut(s) | 1124, 2526 |
| Bme1390I | CCNGG | 5 cut(s) | 971, 1905, 2040, 2181, 2996 |
| Bme18I | GGWCC | 1 cut(s) | 3308 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3100 |
| BmgBI | CACGTC | 1 cut(s) | 378 |
| BmgT120I | GGNCC | 3 cut(s) | 2177, 2997, 3308 |
| BmiI | GGNNCC | 1 cut(s) | 2912 |
| BmrFI | CCNGG | 5 cut(s) | 971, 1905, 2040, 2181, 2996 |
| BmrI | ACTGGG | 2 cut(s) | 1404, 1411 |
| BmsI | GCATC | 8 cut(s) | 1757, 1870, 1966, 2147, 2335, 2454, 2711, 2725 |
| BmuI | ACTGGG | 2 cut(s) | 1404, 1411 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3216 |
| BpiI | GAAGAC | 3 cut(s) | 1215, 2598, 3079 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 85, 117 |
| BpmI | CTGGAG | 3 cut(s) | 505, 953, 2625 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1953 |
| BpuEI | CTTGAG | 2 cut(s) | 1054, 3091 |
| BpuMI | CCSGG | 1 cut(s) | 2996 |
| BsaAI | YACGTR | 2 cut(s) | 1067, 1433 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1590 |
| BsaI | GGTCTC | 1 cut(s) | 3418 |
| BsaJI | CCNNGG | 6 cut(s) | 796, 970, 2039, 2295, 2427, 2914 |
| BsaWI | WCCGGW | 3 cut(s) | 216, 3328, 3597 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 458, 1373, 2270, 2648, 3305 |
| Bse118I | RCCGGY | 1 cut(s) | 3472 |
| Bse3DI | GCAATG | 2 cut(s) | 819, 1743 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1590 |
| BseAI | TCCGGA | 2 cut(s) | 3328, 3597 |
| BseBI | CCWGG | 4 cut(s) | 971, 1905, 2040, 2181 |
| BseDI | CCNNGG | 6 cut(s) | 796, 970, 2039, 2295, 2427, 2914 |
| BseGI | GGATG | 7 cut(s) | 93, 293, 719, 952, 2404, 2980, 3451 |
| BseJI | GATNNNNATC | 1 cut(s) | 1590 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 458, 1373, 2270, 2648, 3305 |
| BseMI | GCAATG | 2 cut(s) | 819, 1743 |
| BseMII | CTCAG | 8 cut(s) | 312, 519, 1967, 2385, 2837, 2875, 3348, 3413 |
| BseRI | GAGGAG | 4 cut(s) | 146, 385, 768, 893 |
| BsgI | GTGCAG | 5 cut(s) | 186, 263, 540, 2175, 3390 |
| Bsh1236I | CGCG | 3 cut(s) | 702, 870, 3660 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3097 |
| BshFI | GGCC | 7 cut(s) | 424, 671, 2006, 2179, 2426, 2985, 2999 |
| BsiEI | CGRYCG | 1 cut(s) | 3097 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1040, 2641 |
| BsiSI | CCGG | 5 cut(s) | 217, 2995, 3329, 3473, 3598 |
| BslFI | GGGAC | 1 cut(s) | 2246 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 458, 1373, 2270, 2648, 3305 |
| BsmAI | GTCTC | 3 cut(s) | 701, 780, 3418 |
| BsmFI | GGGAC | 1 cut(s) | 2246 |
| BsmI | GAATGC | 2 cut(s) | 1062, 3437 |
| BsnI | GGCC | 7 cut(s) | 424, 671, 2006, 2179, 2426, 2985, 2999 |
| Bso31I | GGTCTC | 1 cut(s) | 3418 |
| Bsp1286I | GDGCHC | 3 cut(s) | 211, 1040, 2641 |
| Bsp13I | TCCGGA | 2 cut(s) | 3328, 3597 |
| Bsp1407I | TGTACA | 1 cut(s) | 3138 |
| Bsp143I | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1953 |
| Bsp19I | CCATGG | 3 cut(s) | 2295, 2427, 2914 |
| Bsp68I | TCGCGA | 1 cut(s) | 3660 |
| BspACI | CCGC | 8 cut(s) | 589, 702, 1027, 1883, 2194, 2761, 2895, 3097 |
| BspANI | GGCC | 7 cut(s) | 424, 671, 2006, 2179, 2426, 2985, 2999 |
| BspCNI | CTCAG | 8 cut(s) | 313, 520, 1966, 2386, 2838, 2874, 3349, 3414 |
| BspEI | TCCGGA | 2 cut(s) | 3328, 3597 |
| BspFNI | CGCG | 3 cut(s) | 702, 870, 3660 |
| BspHI | TCATGA | 1 cut(s) | 939 |
| BspLI | GGNNCC | 1 cut(s) | 2912 |
| BspMAI | CTGCAG | 2 cut(s) | 1948, 2554 |
| BspMI | ACCTGC | 1 cut(s) | 3074 |
| BspPI | GGATC | 6 cut(s) | 357, 483, 569, 2371, 2905, 2918 |
| BspQI | GCTCTTC | 2 cut(s) | 216, 2155 |
| BspTNI | GGTCTC | 1 cut(s) | 3418 |
| BsrBI | CCGCTC | 1 cut(s) | 1027 |
| BsrDI | GCAATG | 2 cut(s) | 819, 1743 |
| BsrFI | RCCGGY | 1 cut(s) | 3472 |
| BsrGI | TGTACA | 1 cut(s) | 3138 |
| BssAI | RCCGGY | 1 cut(s) | 3472 |
| BssECI | CCNNGG | 6 cut(s) | 796, 970, 2039, 2295, 2427, 2914 |
| BssMI | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| BssT1I | CCWWGG | 4 cut(s) | 796, 2295, 2427, 2914 |
| Bst2UI | CCWGG | 4 cut(s) | 971, 1905, 2040, 2181 |
| Bst6I | CTCTTC | 4 cut(s) | 216, 513, 983, 2155 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 830, 924 |
| BstAUI | TGTACA | 1 cut(s) | 3138 |
| BstBAI | YACGTR | 2 cut(s) | 1067, 1433 |
| BstC8I | GCNNGC | 4 cut(s) | 1944, 3233, 3378, 3435 |
| BstDSI | CCRYGG | 3 cut(s) | 2295, 2427, 2914 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| BstF5I | GGATG | 7 cut(s) | 93, 293, 719, 952, 2404, 2980, 3451 |
| BstFNI | CGCG | 3 cut(s) | 702, 870, 3660 |
| BstHHI | GCGC | 1 cut(s) | 3036 |
| BstKTI | GATC | 8 cut(s) | 352, 478, 577, 1150, 1594, 2379, 2682, 2913 |
| BstMAI | GTCTC | 3 cut(s) | 701, 780, 3418 |
| BstMBI | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| BstMCI | CGRYCG | 1 cut(s) | 3097 |
| BstNI | CCWGG | 4 cut(s) | 971, 1905, 2040, 2181 |
| BstNSI | RCATGY | 4 cut(s) | 10, 596, 1335, 3175 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3216 |
| BstSCI | CCNGG | 5 cut(s) | 969, 1903, 2038, 2179, 2994 |
| BstSFI | CTRYAG | 3 cut(s) | 1143, 1944, 2550 |
| BstSNI | TACGTA | 1 cut(s) | 1433 |
| BstUI | CGCG | 3 cut(s) | 702, 870, 3660 |
| BstV2I | GAAGAC | 3 cut(s) | 1215, 2598, 3079 |
| BstX2I | RGATCY | 3 cut(s) | 574, 2376, 2910 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1204 |
| BstYI | RGATCY | 3 cut(s) | 574, 2376, 2910 |
| BsuI | GTATCC | 1 cut(s) | 803 |
| BsuRI | GGCC | 7 cut(s) | 424, 671, 2006, 2179, 2426, 2985, 2999 |
| BtgI | CCRYGG | 3 cut(s) | 2295, 2427, 2914 |
| BtrI | CACGTC | 1 cut(s) | 378 |
| BtsCI | GGATG | 7 cut(s) | 93, 293, 719, 952, 2404, 2980, 3451 |
| BtsI | GCAGTG | 3 cut(s) | 2737, 3253, 3378 |
| BtuMI | TCGCGA | 1 cut(s) | 3660 |
| BveI | ACCTGC | 1 cut(s) | 3074 |
| Cac8I | GCNNGC | 4 cut(s) | 1944, 3233, 3378, 3435 |
| CaiI | CAGNNNCTG | 2 cut(s) | 200, 2180 |
| CciI | TCATGA | 1 cut(s) | 939 |
| CfoI | GCGC | 1 cut(s) | 3036 |
| Cfr10I | RCCGGY | 1 cut(s) | 3472 |
| Cfr13I | GGNCC | 3 cut(s) | 2177, 2997, 3308 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1996, 2031 |
| DpnI | GATC | 8 cut(s) | 351, 477, 576, 1149, 1593, 2378, 2681, 2912 |
| DpnII | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| DraI | TTTAAA | 4 cut(s) | 1279, 2095, 3364, 3468 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3100 |
| EaeI | YGGCCR | 1 cut(s) | 2004 |
| Eam1104I | CTCTTC | 4 cut(s) | 216, 513, 983, 2155 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3100 |
| EarI | CTCTTC | 4 cut(s) | 216, 513, 983, 2155 |
| EciI | GGCGGA | 1 cut(s) | 2183 |
| Eco105I | TACGTA | 1 cut(s) | 1433 |
| Eco130I | CCWWGG | 4 cut(s) | 796, 2295, 2427, 2914 |
| Eco147I | AGGCCT | 2 cut(s) | 424, 2985 |
| Eco24I | GRGCYC | 1 cut(s) | 211 |
| Eco31I | GGTCTC | 1 cut(s) | 3418 |
| Eco47I | GGWCC | 1 cut(s) | 3308 |
| Eco57I | CTGAAG | 4 cut(s) | 630, 1193, 1776, 2529 |
| Eco72I | CACGTG | 1 cut(s) | 1067 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2177 |
| EcoRII | CCWGG | 4 cut(s) | 969, 1903, 2038, 2179 |
| EcoT14I | CCWWGG | 4 cut(s) | 796, 2295, 2427, 2914 |
| EcoT22I | ATGCAT | 1 cut(s) | 2832 |
| EcoT38I | GRGCYC | 1 cut(s) | 211 |
| ErhI | CCWWGG | 4 cut(s) | 796, 2295, 2427, 2914 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2250, 2282 |
| FaqI | GGGAC | 1 cut(s) | 2246 |
| FauNDI | CATATG | 3 cut(s) | 853, 1627, 2533 |
| FbaI | TGATCA | 1 cut(s) | 2679 |
| FblI | GTMKAC | 1 cut(s) | 1284 |
| FokI | GGATG | 7 cut(s) | 100, 280, 726, 959, 2411, 2987, 3438 |
| FriOI | GRGCYC | 1 cut(s) | 211 |
| FspBI | CTAG | 6 cut(s) | 840, 1269, 1829, 1842, 2417, 2528 |
| GlaI | GCGC | 1 cut(s) | 3035 |
| GsuI | CTGGAG | 3 cut(s) | 505, 953, 2625 |
| HaeIII | GGCC | 7 cut(s) | 424, 671, 2006, 2179, 2426, 2985, 2999 |
| HapII | CCGG | 5 cut(s) | 217, 2995, 3329, 3473, 3598 |
| HhaI | GCGC | 1 cut(s) | 3036 |
| Hin6I | GCGC | 1 cut(s) | 3034 |
| HinP1I | GCGC | 1 cut(s) | 3034 |
| HincII | GTYRAC | 1 cut(s) | 3211 |
| HindII | GTYRAC | 1 cut(s) | 3211 |
| HindIII | AAGCTT | 5 cut(s) | 548, 1175, 3233, 3323, 3378 |
| HpaII | CCGG | 5 cut(s) | 217, 2995, 3329, 3473, 3598 |
| HphI | GGTGA | 7 cut(s) | 887, 986, 1676, 1721, 2663, 2689, 2909 |
| Hpy99I | CGWCG | 1 cut(s) | 819 |
| HpyAV | CCTTC | 9 cut(s) | 18, 121, 130, 1481, 1519, 2264, 2291, 2416, 2975 |
| HpyCH4IV | ACGT | 6 cut(s) | 377, 1066, 1099, 1432, 1737, 2152 |
| HpySE526I | ACGT | 6 cut(s) | 377, 1066, 1099, 1432, 1737, 2152 |
| HspAI | GCGC | 1 cut(s) | 3034 |
| Kpn2I | TCCGGA | 2 cut(s) | 3328, 3597 |
| Ksp22I | TGATCA | 1 cut(s) | 2679 |
| Kzo9I | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| LguI | GCTCTTC | 2 cut(s) | 216, 2155 |
| LmnI | GCTCC | 5 cut(s) | 652, 932, 2472, 2644, 3127 |
| LweI | GCATC | 8 cut(s) | 1757, 1870, 1966, 2147, 2335, 2454, 2711, 2725 |
| MaeI | CTAG | 6 cut(s) | 840, 1269, 1829, 1842, 2417, 2528 |
| MaeII | ACGT | 6 cut(s) | 377, 1066, 1099, 1432, 1737, 2152 |
| MalI | GATC | 8 cut(s) | 351, 477, 576, 1149, 1593, 2378, 2681, 2912 |
| MbiI | CCGCTC | 1 cut(s) | 1027 |
| MboI | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| MflI | RGATCY | 3 cut(s) | 574, 2376, 2910 |
| MhlI | GDGCHC | 3 cut(s) | 211, 1040, 2641 |
| MlsI | TGGCCA | 1 cut(s) | 2006 |
| MluI | ACGCGT | 1 cut(s) | 868 |
| MluNI | TGGCCA | 1 cut(s) | 2006 |
| MlyI | GAGTC | 5 cut(s) | 332, 386, 532, 539, 1826 |
| MmeI | TCCRAC | 4 cut(s) | 306, 1489, 3323, 3378 |
| Mox20I | TGGCCA | 1 cut(s) | 2006 |
| Mph1103I | ATGCAT | 1 cut(s) | 2832 |
| MroI | TCCGGA | 2 cut(s) | 3328, 3597 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1060, 1542, 1786, 3086, 3495 |
| MscI | TGGCCA | 1 cut(s) | 2006 |
| MslI | CAYNNNNRTG | 8 cut(s) | 1055, 1202, 1382, 1563, 2483, 2730, 2883, 3540 |
| Msp20I | TGGCCA | 1 cut(s) | 2006 |
| MspA1I | CMGCKG | 1 cut(s) | 2549 |
| MspI | CCGG | 5 cut(s) | 217, 2995, 3329, 3473, 3598 |
| MspR9I | CCNGG | 5 cut(s) | 971, 1905, 2040, 2181, 2996 |
| Mva1269I | GAATGC | 2 cut(s) | 1062, 3437 |
| MvaI | CCWGG | 4 cut(s) | 971, 1905, 2040, 2181 |
| MvnI | CGCG | 3 cut(s) | 702, 870, 3660 |
| NciI | CCSGG | 1 cut(s) | 2996 |
| NcoI | CCATGG | 3 cut(s) | 2295, 2427, 2914 |
| NdeI | CATATG | 3 cut(s) | 853, 1627, 2533 |
| NdeII | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| NlaIV | GGNNCC | 1 cut(s) | 2912 |
| NmuCI | GTSAC | 7 cut(s) | 1390, 1664, 2029, 2183, 2407, 3272, 3292 |
| NruI | TCGCGA | 1 cut(s) | 3660 |
| NsiI | ATGCAT | 1 cut(s) | 2832 |
| NspI | RCATGY | 4 cut(s) | 10, 596, 1335, 3175 |
| OliI | CACNNNNGTG | 1 cut(s) | 3540 |
| PagI | TCATGA | 1 cut(s) | 939 |
| PceI | AGGCCT | 2 cut(s) | 424, 2985 |
| PciI | ACATGT | 1 cut(s) | 6 |
| PciSI | GCTCTTC | 2 cut(s) | 216, 2155 |
| PctI | GAATGC | 2 cut(s) | 1062, 3437 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1060, 1542, 1786, 3086, 3495 |
| PfeI | GAWTC | 6 cut(s) | 190, 245, 1676, 1769, 1796, 3502 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 458, 3305 |
| PleI | GAGTC | 5 cut(s) | 331, 386, 531, 538, 1826 |
| PmaCI | CACGTG | 1 cut(s) | 1067 |
| PmlI | CACGTG | 1 cut(s) | 1067 |
| PpsI | GAGTC | 5 cut(s) | 331, 386, 531, 538, 1826 |
| Ppu21I | YACGTR | 2 cut(s) | 1067, 1433 |
| PscI | ACATGT | 1 cut(s) | 6 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3216 |
| PsiI | TTATAA | 3 cut(s) | 644, 1004, 2508 |
| Psp6I | CCWGG | 4 cut(s) | 969, 1903, 2038, 2179 |
| PspCI | CACGTG | 1 cut(s) | 1067 |
| PspGI | CCWGG | 4 cut(s) | 969, 1903, 2038, 2179 |
| PspN4I | GGNNCC | 1 cut(s) | 2912 |
| PspPI | GGNCC | 3 cut(s) | 2177, 2997, 3308 |
| PstI | CTGCAG | 2 cut(s) | 1948, 2554 |
| PstNI | CAGNNNCTG | 2 cut(s) | 200, 2180 |
| PsuI | RGATCY | 3 cut(s) | 574, 2376, 2910 |
| PvuII | CAGCTG | 1 cut(s) | 2549 |
| RruI | TCGCGA | 1 cut(s) | 3660 |
| RseI | CAYNNNNRTG | 8 cut(s) | 1055, 1202, 1382, 1563, 2483, 2730, 2883, 3540 |
| SapI | GCTCTTC | 2 cut(s) | 216, 2155 |
| Sau3AI | GATC | 8 cut(s) | 349, 475, 574, 1147, 1591, 2376, 2679, 2910 |
| Sau96I | GGNCC | 3 cut(s) | 2177, 2997, 3308 |
| ScaI | AGTACT | 2 cut(s) | 1124, 2526 |
| SchI | GAGTC | 5 cut(s) | 332, 386, 532, 539, 1826 |
| ScrFI | CCNGG | 5 cut(s) | 971, 1905, 2040, 2181, 2996 |
| SduI | GDGCHC | 3 cut(s) | 211, 1040, 2641 |
| SfaNI | GCATC | 8 cut(s) | 1757, 1870, 1966, 2147, 2335, 2454, 2711, 2725 |
| SfcI | CTRYAG | 3 cut(s) | 1143, 1944, 2550 |
| SinI | GGWCC | 1 cut(s) | 3308 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 1055, 1202, 1382, 1563, 2483, 2730, 2883, 3540 |
| SmlI | CTYRAG | 2 cut(s) | 1033, 3070 |
| SmoI | CTYRAG | 2 cut(s) | 1033, 3070 |
| SnaBI | TACGTA | 1 cut(s) | 1433 |
| SseBI | AGGCCT | 2 cut(s) | 424, 2985 |
| SsiI | CCGC | 8 cut(s) | 589, 702, 1027, 1883, 2194, 2761, 2895, 3097 |
| SspI | AATATT | 4 cut(s) | 232, 954, 2572, 3131 |
| SspMI | CTAG | 6 cut(s) | 840, 1269, 1829, 1842, 2417, 2528 |
| StuI | AGGCCT | 2 cut(s) | 424, 2985 |
| StyD4I | CCNGG | 5 cut(s) | 969, 1903, 2038, 2179, 2994 |
| StyI | CCWWGG | 4 cut(s) | 796, 2295, 2427, 2914 |
| TaiI | ACGT | 6 cut(s) | 380, 1069, 1102, 1435, 1740, 2155 |
| TaqI | TCGA | 4 cut(s) | 2058, 3093, 3192, 3487 |
| TatI | WGTACW | 4 cut(s) | 1122, 2119, 2524, 3138 |
| TauI | GCSGC | 2 cut(s) | 592, 2764 |
| TfiI | GAWTC | 6 cut(s) | 190, 245, 1676, 1769, 1796, 3502 |
| TseFI | GTSAC | 7 cut(s) | 1390, 1664, 2029, 2183, 2407, 3272, 3292 |
| Tsp45I | GTSAC | 7 cut(s) | 1390, 1664, 2029, 2183, 2407, 3272, 3292 |
| TspGWI | ACGGA | 1 cut(s) | 959 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 458, 3305 |
| VpaK11BI | GGWCC | 1 cut(s) | 3308 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| XapI | RAATTY | 6 cut(s) | 682, 1350, 2629, 2713, 2900, 3616 |
| XbaI | TCTAGA | 2 cut(s) | 1268, 1828 |
| XceI | RCATGY | 4 cut(s) | 10, 596, 1335, 3175 |
| XmiI | GTMKAC | 1 cut(s) | 1284 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1060, 1542, 1786, 3086, 3495 |
| XspI | CTAG | 6 cut(s) | 840, 1269, 1829, 1842, 2417, 2528 |
| ZrmI | AGTACT | 2 cut(s) | 1124, 2526 |
| Zsp2I | ATGCAT | 1 cut(s) | 2832 |