Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

16040992 .. 16041775

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGAAGCTGGCCGCGGTTCCTCTTGAGAACAATAATTCTCATGAAGACGGTTCAACATCCGTTAGGGTGCAACAACTGAAGGGCATGCTCACGGATATTGTGGTGGGTGGAACTGACACTACGGCAACAACAGTGGAATGGGTTCTTACTGAGCTGATGCAGCACCCAGAAGAAATGATAAGAGTTCAAGAAGAACTGACACAAATTGTGGGGTTGAACAACTTGGTTGAAGAGTTTCATTTGCCGAAATTACATCACTTAGATGCTGTGATCAAGGAGACATTTCGCTTGCACCCTGCACTGCCCCTTCTAGTGCCCCGGCGTTCAAGCCAACCTACCACCATTGGTGGCTATTACATACCAAAAGGTTCCATTTTGTTTCTCAATGCTTGGGCCATACACAGAGATCCAAGTGTTTGGGACGATCCCTTGGAATTTAGACCCCAGAGGTTCCTAAATCCAAGCAATAGCTTTAATTACCAAGGCAATAAATTTCAGTTTCTTCCATTTGGTTCTGGGAGGAGAGTATGTGTCGGGATTACCTTGGCAGAGAGGATGCCGATCTATACGTTGGCTTCATTCTTGCATTCGTTCGAGTGGAAATTGCCTAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

206

Amino Acids

23.46

Weight (kDa)

6.24

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	10 - 204	8.6e-64	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	2 cut(s)	15, 17
AclWI	GGATC	2 cut(s)	404, 422
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	437, 494
AcuI	CTGAAG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	57, 191, 220, 233, 330
AluBI	AGCT	3 cut(s)	10, 157, 474
AluI	AGCT	3 cut(s)	10, 157, 474
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	404, 422
AoxI	GGCC	2 cut(s)	12, 396
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	437, 494
Asp700I	GAANNNNTTC	2 cut(s)	144, 237
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	15, 164
BlsI	GCNGC	2 cut(s)	16, 165
Bme1390I	CCNGG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	3 cut(s)	21, 373, 455
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	150, 256, 549
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	563
BsaJI	CCNNGG	5 cut(s)	15, 320, 432, 484, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bse8I	GATNNNNATC	1 cut(s)	563
BseDI	CCNNGG	5 cut(s)	15, 320, 432, 484, 546
BseGI	GGATG	2 cut(s)	59, 564
BseJI	GATNNNNATC	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	14, 398
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	14, 398
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	273, 409, 427, 564
BspACI	CCGC	2 cut(s)	15, 17
BspANI	GGCC	2 cut(s)	14, 398
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	21, 373, 455
BspPI	GGATC	2 cut(s)	404, 422
BssECI	CCNNGG	5 cut(s)	15, 320, 432, 484, 546
BssMI	GATC	4 cut(s)	273, 409, 427, 564
BssT1I	CCWWGG	3 cut(s)	432, 484, 546
Bst4CI	ACNGT	2 cut(s)	53, 136
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	12, 89, 293
BstDEI	CTNAG	2 cut(s)	153, 262
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	59, 564
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	4 cut(s)	276, 412, 430, 567
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	4 cut(s)	273, 409, 427, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	14, 398
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	59, 564
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	141, 302
Cac8I	GCNNGC	3 cut(s)	12, 89, 293
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	396
Cfr42I	CCGCGG	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	2 cut(s)	44, 88
CviJI	RGCY	8 cut(s)	10, 14, 157, 333, 354, 398, 474, 578
CviKI_1	RGCY	8 cut(s)	10, 14, 157, 333, 354, 398, 474, 578
DdeI	CTNAG	2 cut(s)	153, 262
DpnI	GATC	4 cut(s)	275, 411, 429, 566
DpnII	GATC	4 cut(s)	273, 409, 427, 564
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	432, 484, 546
Eco57I	CTGAAG	1 cut(s)	101
EcoT14I	CCWWGG	3 cut(s)	432, 484, 546
ErhI	CCWWGG	3 cut(s)	432, 484, 546
FaeI	CATG	2 cut(s)	47, 91
FaiI	YATR	6 cut(s)	45, 89, 362, 401, 532, 570
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	43, 87
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	15, 164
FokI	GGATG	2 cut(s)	46, 571
Fsp4HI	GCNGC	2 cut(s)	15, 164
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	2 cut(s)	15, 164
HaeIII	GGCC	2 cut(s)	14, 398
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	2 cut(s)	47, 91
HpaII	CCGG	1 cut(s)	322
Hpy188III	TCNNGA	4 cut(s)	26, 44, 191, 538
HpyAV	CCTTC	2 cut(s)	76, 320
HpyCH4III	ACNGT	2 cut(s)	53, 136
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	73, 163, 295, 302, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	153, 262
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	2 cut(s)	47, 91
Ksp22I	TGATCA	1 cut(s)	273
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	273, 409, 427, 564
LpnPI	CCDG	5 cut(s)	183, 312, 335, 461, 504
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	3 cut(s)	150, 256, 549
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	572
MalI	GATC	4 cut(s)	275, 411, 429, 566
MboI	GATC	4 cut(s)	273, 409, 427, 564
MboII	GAAGA	6 cut(s)	16, 59, 185, 206, 245, 497
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	7 cut(s)	37, 207, 251, 437, 478, 494, 605
MnlI	CCTC	4 cut(s)	33, 444, 516, 549
MroXI	GAANNNNTTC	2 cut(s)	144, 237
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	589
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	4 cut(s)	273, 409, 427, 564
NlaIII	CATG	2 cut(s)	47, 91
NlaIV	GGNNCC	3 cut(s)	21, 373, 455
NspI	RCATGY	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	43
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	2 cut(s)	144, 237
PkrI	GCNGC	2 cut(s)	16, 165
PspN4I	GGNNCC	3 cut(s)	21, 373, 455
PspPI	GGNCC	1 cut(s)	396
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PsuI	RGATCY	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	264
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	15, 164
Sau3AI	GATC	4 cut(s)	273, 409, 427, 564
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	12, 159, 340, 373, 455, 476, 548, 575
SfaNI	GCATC	3 cut(s)	150, 256, 549
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	7 cut(s)	37, 207, 251, 437, 478, 494, 605
SsiI	CCGC	2 cut(s)	15, 17
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	3 cut(s)	432, 484, 546
TaaI	ACNGT	2 cut(s)	53, 136
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	1 cut(s)	597
TasI	AATT	7 cut(s)	37, 207, 251, 437, 478, 494, 605
TauI	GCSGC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	141, 309
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	17, 60, 230, 570
TspGWI	ACGGA	2 cut(s)	52, 110
TspRI	CASTG	2 cut(s)	141, 309
XapI	RAATTY	2 cut(s)	437, 494
XceI	RCATGY	1 cut(s)	91
XmnI	GAANNNNTTC	2 cut(s)	144, 237
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.