Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

85633636 .. 85634933

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG627200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGGAGCAAGAGATAATGGAGGCTATAAACGAGCATTCCACTGTAATTATACGCAGAGAGACTGGATGTGGTAAAACAACCCAAGTTCCTCAGTTTCTTTATGAAGTTGGCATCGGTTCAAGCGGGTGCCCTCTTGGAAGTGGTATTATTGGTGTTACTCAACCCCGCTGCATTGCAGTCACTGCAACTGCTAAGCGTGTGGCATATGAGCTTGGCCTACAATTGGGTGAGGGGGTTGGATTTCAATATAGATATGACAAAAAGATTGGTGAAAGTTGCTCTATCAAATTCATGACAGATGGAATATTACTACGAGAAATCCAGGGTGATTTTTATTTGAAGAGATACTCTGTCATAATTCTTGATGAGGTCCATGAGCGGAGCTTGTGCACAGAGACGCTCATCGGAATGCTTTCAGCTATAATTGGTGTTCGTCAGGTGAAGCTCAATACTGGTATAACTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

156

Amino Acids

17.17

Weight (kDa)

6.13

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	3 cut(s)	126, 169, 382
AcsI	RAATTY	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	123, 248, 343
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	214, 387, 422, 448
AluI	AGCT	4 cut(s)	214, 387, 422, 448
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	56, 392
Alw44I	GTGCAC	1 cut(s)	391
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	4 cut(s)	242, 284, 341, 454
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	2 cut(s)	134, 395
BanI	GGYRCC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	56, 392
BfaI	CTAG	1 cut(s)	469
BisI	GCNGC	1 cut(s)	172
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	70, 460
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	70, 460
BseSI	GKGCMC	2 cut(s)	134, 395
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	56, 392
BsmBI	CGTCTC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	37, 417
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	134, 395
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	3 cut(s)	126, 169, 382
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	70, 460
BssECI	CCNNGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	93, 195
BstF5I	GGATG	1 cut(s)	74
BstMAI	GTCTC	2 cut(s)	56, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	2 cut(s)	134, 395
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	42, 183
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	1 cut(s)	409
CviAII	CATG	2 cut(s)	295, 377
CviJI	RGCY	6 cut(s)	26, 214, 219, 387, 422, 448
CviKI_1	RGCY	6 cut(s)	26, 214, 219, 387, 422, 448
DdeI	CTNAG	2 cut(s)	93, 195
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	2 cut(s)	298, 380
FatI	CATG	2 cut(s)	294, 376
FauI	CCCGC	2 cut(s)	119, 176
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	469
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	298, 380
HphI	GGTGA	4 cut(s)	242, 284, 341, 454
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	410
Hpy188III	TCNNGA	2 cut(s)	295, 365
Hpy8I	GTNNAC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	4 cut(s)	174, 179, 188, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	93, 195
Hsp92II	CATG	2 cut(s)	298, 380
LmnI	GCTCC	2 cut(s)	7, 384
LpnPI	CCDG	5 cut(s)	51, 311, 338, 425, 441
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	157, 181
MbiI	CCGCTC	1 cut(s)	382
MboII	GAAGA	1 cut(s)	355
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	134, 395
MluCI	AATT	5 cut(s)	48, 224, 290, 360, 426
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	16, 102, 144, 226, 364
MroXI	GAANNNNTTC	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	2 cut(s)	37, 417
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	208
NlaIII	CATG	2 cut(s)	298, 380
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	294
PctI	GAATGC	2 cut(s)	37, 417
PdmI	GAANNNNTTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	410
SatI	GCNGC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	134, 395
SetI	ASST	6 cut(s)	216, 375, 389, 424, 444, 450
SfaNI	GCATC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	5 cut(s)	48, 224, 290, 360, 426
SsiI	CCGC	3 cut(s)	126, 169, 382
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	46
TasI	AATT	5 cut(s)	48, 224, 290, 360, 426
TscAI	CASTG	2 cut(s)	49, 190
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	120, 283
TspRI	CASTG	2 cut(s)	49, 190
VneI	GTGCAC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.