ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_C | PF00271 | 315 - 367 | 5.1e-07 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 266 |
| Acc36I | ACCTGC | 1 cut(s) | 985 |
| AccBSI | CCGCTC | 1 cut(s) | 58 |
| AccI | GTMKAC | 1 cut(s) | 1092 |
| AciI | CCGC | 1 cut(s) | 58 |
| AclWI | GGATC | 1 cut(s) | 245 |
| AcoI | YGGCCR | 1 cut(s) | 804 |
| AcsI | RAATTY | 1 cut(s) | 360 |
| AcuI | CTGAAG | 5 cut(s) | 339, 513, 803, 804, 816 |
| AdeI | CACNNNGTG | 1 cut(s) | 950 |
| AfaI | GTAC | 2 cut(s) | 859, 1155 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 383 |
| AgsI | TTSAA | 6 cut(s) | 19, 193, 453, 797, 923, 1004 |
| AjnI | CCWGG | 2 cut(s) | 928, 1072 |
| Alw21I | GWGCWC | 2 cut(s) | 71, 204 |
| Alw26I | GTCTC | 1 cut(s) | 68 |
| Alw44I | GTGCAC | 1 cut(s) | 67 |
| AlwI | GGATC | 1 cut(s) | 245 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 766 |
| AoxI | GGCC | 2 cut(s) | 786, 804 |
| ApaLI | GTGCAC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 2 cut(s) | 980, 983 |
| ApoI | RAATTY | 1 cut(s) | 360 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 91, 814, 1026 |
| AspS9I | GGNCC | 1 cut(s) | 49 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 704 |
| AvaII | GGWCC | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 1 cut(s) | 71 |
| BalI | TGGCCA | 1 cut(s) | 806 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| Bbv12I | GWGCWC | 2 cut(s) | 71, 204 |
| BbvI | GCAGC | 2 cut(s) | 992, 995 |
| BccI | CCATC | 3 cut(s) | 581, 585, 728 |
| BciT130I | CCWGG | 2 cut(s) | 930, 1074 |
| BcoDI | GTCTC | 1 cut(s) | 68 |
| BfaI | CTAG | 2 cut(s) | 680, 938 |
| BfmI | CTRYAG | 1 cut(s) | 978 |
| BfuAI | ACCTGC | 1 cut(s) | 985 |
| BisI | GCNGC | 2 cut(s) | 981, 984 |
| BlpI | GCTNAGC | 1 cut(s) | 987 |
| BlsI | GCNGC | 2 cut(s) | 982, 985 |
| Bme1390I | CCNGG | 2 cut(s) | 930, 1074 |
| Bme18I | GGWCC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 1 cut(s) | 49 |
| BmrFI | CCNGG | 2 cut(s) | 930, 1074 |
| BmrI | ACTGGG | 1 cut(s) | 414 |
| BmsI | GCATC | 4 cut(s) | 418, 649, 785, 1181 |
| BmuI | ACTGGG | 1 cut(s) | 414 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 987 |
| BsaBI | GATNNNNATC | 1 cut(s) | 609 |
| BsaJI | CCNNGG | 2 cut(s) | 928, 1073 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 383 |
| Bse1I | ACTGG | 3 cut(s) | 221, 409, 1102 |
| Bse3DI | GCAATG | 1 cut(s) | 771 |
| Bse8I | GATNNNNATC | 1 cut(s) | 609 |
| BseBI | CCWGG | 2 cut(s) | 930, 1074 |
| BseDI | CCNNGG | 2 cut(s) | 928, 1073 |
| BseJI | GATNNNNATC | 1 cut(s) | 609 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BseMI | GCAATG | 1 cut(s) | 771 |
| BseMII | CTCAG | 3 cut(s) | 314, 321, 1001 |
| BseNI | ACTGG | 3 cut(s) | 221, 409, 1102 |
| BseSI | GKGCMC | 1 cut(s) | 71 |
| BseXI | GCAGC | 2 cut(s) | 992, 995 |
| BshFI | GGCC | 2 cut(s) | 788, 806 |
| BsiHKAI | GWGCWC | 2 cut(s) | 71, 204 |
| BslFI | GGGAC | 1 cut(s) | 919 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 68 |
| BsmBI | CGTCTC | 1 cut(s) | 68 |
| BsmFI | GGGAC | 1 cut(s) | 919 |
| BsmI | GAATGC | 1 cut(s) | 93 |
| BsnI | GGCC | 2 cut(s) | 788, 806 |
| Bsp1286I | GDGCHC | 2 cut(s) | 71, 204 |
| Bsp143I | GATC | 3 cut(s) | 130, 250, 610 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 987 |
| BspACI | CCGC | 1 cut(s) | 58 |
| BspANI | GGCC | 2 cut(s) | 788, 806 |
| BspCNI | CTCAG | 3 cut(s) | 313, 320, 1000 |
| BspHI | TCATGA | 1 cut(s) | 204 |
| BspMAI | CTGCAG | 1 cut(s) | 982 |
| BspMI | ACCTGC | 1 cut(s) | 985 |
| BspPI | GGATC | 1 cut(s) | 245 |
| BsrBI | CCGCTC | 1 cut(s) | 58 |
| BsrDI | GCAATG | 1 cut(s) | 771 |
| BsrI | ACTGG | 3 cut(s) | 221, 409, 1102 |
| BssECI | CCNNGG | 2 cut(s) | 928, 1073 |
| BssMI | GATC | 3 cut(s) | 130, 250, 610 |
| Bst2UI | CCWGG | 2 cut(s) | 930, 1074 |
| Bst4CI | ACNGT | 2 cut(s) | 557, 1158 |
| Bst6I | CTCTTC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 838 |
| BstDEI | CTNAG | 3 cut(s) | 300, 307, 987 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 381 |
| BstKTI | GATC | 3 cut(s) | 133, 253, 613 |
| BstMAI | GTCTC | 1 cut(s) | 68 |
| BstMBI | GATC | 3 cut(s) | 130, 250, 610 |
| BstNI | CCWGG | 2 cut(s) | 930, 1074 |
| BstSCI | CCNGG | 2 cut(s) | 928, 1072 |
| BstSFI | CTRYAG | 1 cut(s) | 978 |
| BstSLI | GKGCMC | 1 cut(s) | 71 |
| BstV1I | GCAGC | 2 cut(s) | 992, 995 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BsuRI | GGCC | 2 cut(s) | 788, 806 |
| BtsI | GCAGTG | 2 cut(s) | 371, 944 |
| BtsIMutI | CAGTG | 8 cut(s) | 228, 371, 402, 489, 779, 944, 1095, 1163 |
| BveI | ACCTGC | 1 cut(s) | 985 |
| Cac8I | GCNNGC | 1 cut(s) | 838 |
| CaiI | CAGNNNCTG | 1 cut(s) | 766 |
| CciI | TCATGA | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 1 cut(s) | 49 |
| CseI | GACGC | 3 cut(s) | 85, 137, 980 |
| Csp6I | GTAC | 2 cut(s) | 858, 1154 |
| CviAII | CATG | 8 cut(s) | 53, 205, 217, 380, 855, 970, 995, 1138 |
| CviQI | GTAC | 2 cut(s) | 858, 1154 |
| DdeI | CTNAG | 3 cut(s) | 300, 307, 987 |
| DpnI | GATC | 3 cut(s) | 132, 252, 612 |
| DpnII | GATC | 3 cut(s) | 130, 250, 610 |
| DraI | TTTAAA | 1 cut(s) | 289 |
| DraIII | CACNNNGTG | 1 cut(s) | 950 |
| EaeI | YGGCCR | 1 cut(s) | 804 |
| Eam1104I | CTCTTC | 1 cut(s) | 14 |
| EarI | CTCTTC | 1 cut(s) | 14 |
| Eco147I | AGGCCT | 1 cut(s) | 788 |
| Eco47I | GGWCC | 1 cut(s) | 49 |
| Eco57I | CTGAAG | 5 cut(s) | 339, 513, 803, 804, 816 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 381 |
| EcoRII | CCWGG | 2 cut(s) | 928, 1072 |
| Esp3I | CGTCTC | 1 cut(s) | 68 |
| FaeI | CATG | 8 cut(s) | 56, 208, 220, 383, 858, 973, 998, 1141 |
| FaqI | GGGAC | 1 cut(s) | 919 |
| FatI | CATG | 8 cut(s) | 52, 204, 216, 379, 854, 969, 994, 1137 |
| FblI | GTMKAC | 1 cut(s) | 1092 |
| Fnu4HI | GCNGC | 2 cut(s) | 981, 984 |
| Fsp4HI | GCNGC | 2 cut(s) | 981, 984 |
| FspBI | CTAG | 2 cut(s) | 680, 938 |
| GluI | GCNGC | 2 cut(s) | 981, 984 |
| HaeIII | GGCC | 2 cut(s) | 788, 806 |
| HgaI | GACGC | 3 cut(s) | 85, 137, 980 |
| Hin1II | CATG | 8 cut(s) | 56, 208, 220, 383, 858, 973, 998, 1141 |
| HincII | GTYRAC | 1 cut(s) | 1093 |
| HindII | GTYRAC | 1 cut(s) | 1093 |
| HindIII | AAGCTT | 3 cut(s) | 194, 750, 798 |
| HinfI | GANTC | 5 cut(s) | 647, 704, 763, 824, 866 |
| HphI | GGTGA | 2 cut(s) | 17, 704 |
| Hpy166II | GTNNAC | 3 cut(s) | 69, 944, 1093 |
| Hpy188I | TCNGA | 4 cut(s) | 86, 117, 768, 823 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 170, 205, 248, 279, 413, 500, 863 |
| Hpy8I | GTNNAC | 3 cut(s) | 69, 944, 1093 |
| HpyAV | CCTTC | 5 cut(s) | 314, 488, 583, 778, 1108 |
| HpyCH4III | ACNGT | 2 cut(s) | 557, 1158 |
| HpyCH4V | TGCA | 5 cut(s) | 69, 746, 776, 840, 980 |
| HpyF3I | CTNAG | 3 cut(s) | 300, 307, 987 |
| Hsp92II | CATG | 8 cut(s) | 56, 208, 220, 383, 858, 973, 998, 1141 |
| Kzo9I | GATC | 3 cut(s) | 130, 250, 610 |
| LmnI | GCTCC | 2 cut(s) | 60, 878 |
| Lsp1109I | GCAGC | 2 cut(s) | 992, 995 |
| LweI | GCATC | 4 cut(s) | 418, 649, 785, 1181 |
| MaeI | CTAG | 2 cut(s) | 680, 938 |
| MalI | GATC | 3 cut(s) | 132, 252, 612 |
| MbiI | CCGCTC | 1 cut(s) | 58 |
| MboI | GATC | 3 cut(s) | 130, 250, 610 |
| MboII | GAAGA | 9 cut(s) | 31, 140, 151, 239, 544, 620, 807, 810, 947 |
| MfeI | CAATTG | 1 cut(s) | 474 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MhlI | GDGCHC | 2 cut(s) | 71, 204 |
| MlsI | TGGCCA | 1 cut(s) | 806 |
| MluNI | TGGCCA | 1 cut(s) | 806 |
| MlyI | GAGTC | 1 cut(s) | 818 |
| MmeI | TCCRAC | 2 cut(s) | 624, 900 |
| MnlI | CCTC | 9 cut(s) | 40, 377, 387, 415, 511, 799, 969, 1009, 1069 |
| Mox20I | TGGCCA | 1 cut(s) | 806 |
| MroXI | GAANNNNTTC | 3 cut(s) | 91, 814, 1026 |
| MscI | TGGCCA | 1 cut(s) | 806 |
| MseI | TTAA | 5 cut(s) | 288, 333, 465, 1064, 1183 |
| MslI | CAYNNNNRTG | 2 cut(s) | 86, 221 |
| Msp20I | TGGCCA | 1 cut(s) | 806 |
| MspR9I | CCNGG | 2 cut(s) | 930, 1074 |
| MunI | CAATTG | 1 cut(s) | 474 |
| Mva1269I | GAATGC | 1 cut(s) | 93 |
| MvaI | CCWGG | 2 cut(s) | 930, 1074 |
| NdeII | GATC | 3 cut(s) | 130, 250, 610 |
| NlaIII | CATG | 8 cut(s) | 56, 208, 220, 383, 858, 973, 998, 1141 |
| PagI | TCATGA | 1 cut(s) | 204 |
| PceI | AGGCCT | 1 cut(s) | 788 |
| PctI | GAATGC | 1 cut(s) | 93 |
| PdmI | GAANNNNTTC | 3 cut(s) | 91, 814, 1026 |
| PfeI | GAWTC | 4 cut(s) | 647, 704, 763, 866 |
| PkrI | GCNGC | 2 cut(s) | 982, 985 |
| PleI | GAGTC | 1 cut(s) | 818 |
| PpsI | GAGTC | 1 cut(s) | 818 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| PsiI | TTATAA | 1 cut(s) | 266 |
| Psp6I | CCWGG | 2 cut(s) | 928, 1072 |
| PspGI | CCWGG | 2 cut(s) | 928, 1072 |
| PspPI | GGNCC | 1 cut(s) | 49 |
| PstI | CTGCAG | 1 cut(s) | 982 |
| PstNI | CAGNNNCTG | 1 cut(s) | 766 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| RsaI | GTAC | 2 cut(s) | 859, 1155 |
| RsaNI | GTAC | 2 cut(s) | 858, 1154 |
| RseI | CAYNNNNRTG | 2 cut(s) | 86, 221 |
| SalI | GTCGAC | 1 cut(s) | 1091 |
| SaqAI | TTAA | 5 cut(s) | 288, 333, 465, 1064, 1183 |
| SatI | GCNGC | 2 cut(s) | 981, 984 |
| Sau3AI | GATC | 3 cut(s) | 130, 250, 610 |
| Sau96I | GGNCC | 1 cut(s) | 49 |
| SchI | GAGTC | 1 cut(s) | 818 |
| ScrFI | CCNGG | 2 cut(s) | 930, 1074 |
| SduI | GDGCHC | 2 cut(s) | 71, 204 |
| SfaNI | GCATC | 4 cut(s) | 418, 649, 785, 1181 |
| SfcI | CTRYAG | 1 cut(s) | 978 |
| SinI | GGWCC | 1 cut(s) | 49 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 86, 221 |
| SseBI | AGGCCT | 1 cut(s) | 788 |
| SsiI | CCGC | 1 cut(s) | 58 |
| SspMI | CTAG | 2 cut(s) | 680, 938 |
| StuI | AGGCCT | 1 cut(s) | 788 |
| StyD4I | CCNGG | 2 cut(s) | 928, 1072 |
| TaaI | ACNGT | 2 cut(s) | 557, 1158 |
| TaqI | TCGA | 1 cut(s) | 1092 |
| TatI | WGTACW | 2 cut(s) | 857, 1153 |
| TfiI | GAWTC | 4 cut(s) | 647, 704, 763, 866 |
| Tru1I | TTAA | 5 cut(s) | 288, 333, 465, 1064, 1183 |
| Tru9I | TTAA | 5 cut(s) | 288, 333, 465, 1064, 1183 |
| TscAI | CASTG | 8 cut(s) | 228, 378, 409, 496, 786, 951, 1102, 1163 |
| TseI | GCWGC | 2 cut(s) | 980, 983 |
| TspDTI | ATGAA | 6 cut(s) | 141, 351, 353, 545, 621, 696 |
| TspRI | CASTG | 8 cut(s) | 228, 378, 409, 496, 786, 951, 1102, 1163 |
| VneI | GTGCAC | 1 cut(s) | 67 |
| VpaK11BI | GGWCC | 1 cut(s) | 49 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 360 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 584 |
| XmiI | GTMKAC | 1 cut(s) | 1092 |
| XmnI | GAANNNNTTC | 3 cut(s) | 91, 814, 1026 |
| XspI | CTAG | 2 cut(s) | 680, 938 |