Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

76203547 .. 76206629

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG584700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAATTCGCGATCAGCGTATGGATTTCAGGAGGAATAAGAGGAAGCGAACCAATGAGGATTGTGGAGAAGTCTGTACAAGAGAAGCATTGAAGACGAGAGCATTGCAGAAAAGGAAGCTGAAGAAGTTGCAGGAGGAGAAGGAAAGAGAGCTGCTATCGAAAAGCGTTGAGGCCCCTGGAGTATGGACTCTAGGGCTAGTTTGTGGTAGAAGACTTGACATGAATGCCGGATGTGCAGCTGTCTCACTATCTGAAAATGATATTATTTACACGTATGACACGTCTCTACGGGAAAACACAAATATTTTGTGCACTTCAAGCATGAATGATGACAGTGAAAGCACAAACTCAATGGTGCATATTGGACAGGATAAGATAAAAGAGAGTCCAAAGCCAAATACGAGCTGGGAAAATGAATTAGCAGATTTTCCTGCACTGAGTTTTCTGAAAGATTCAAAGAATGGGCGGCATATATCAAGACCTCGTGAAGTTGTAGATGCAAGGAATGATATTCCCATAGTAATGATGGAGCAAGAGATAATGGAGGCTATAAATGAGCATTCCACTGTAATTATACGCGGAGAGACTGGATGTGGTAAAACACAACCCAAGTTCCTCAGTTTCTTTATGAAGTTGGCATCGGTTCAAGCGGGTGCCCTCTTGGAAGTGATGGAATATTACTATGAGAAATCCAGGGTGATTTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

237

Amino Acids

27.16

Weight (kDa)

8.15

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	656
AccII	CGCG	2 cut(s)	12, 582
AciI	CCGC	3 cut(s)	469, 582, 653
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	79
AflIII	ACRYGT	2 cut(s)	273, 282
AgsI	TTSAA	4 cut(s)	94, 321, 459, 650
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	178, 695
AluBI	AGCT	4 cut(s)	121, 154, 242, 408
AluI	AGCT	4 cut(s)	121, 154, 242, 408
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	3 cut(s)	250, 291, 581
Alw44I	GTGCAC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	154, 239
ApoI	RAATTY	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	712
BaeGI	GKGCMC	2 cut(s)	317, 661
BanI	GGYRCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	101, 220
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	141, 251
BccI	CCATC	2 cut(s)	523, 667
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	2 cut(s)	180, 697
BcoDI	GTCTC	3 cut(s)	250, 291, 581
BfaI	CTAG	2 cut(s)	194, 200
BisI	GCNGC	3 cut(s)	155, 240, 470
BlsI	GCNGC	3 cut(s)	156, 241, 471
Bme1390I	CCNGG	2 cut(s)	180, 697
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	177, 658
BmrFI	CCNGG	2 cut(s)	180, 697
BmsI	GCATC	2 cut(s)	490, 650
BpiI	GAAGAC	2 cut(s)	101, 220
BpmI	CTGGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	178, 696
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	180, 697
BseDI	CCNNGG	2 cut(s)	178, 696
BseGI	GGATG	2 cut(s)	239, 599
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	431, 634
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	317, 661
BseXI	GCAGC	2 cut(s)	141, 251
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	2 cut(s)	258, 420
Bsh1236I	CGCG	2 cut(s)	12, 582
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	231
BsmAI	GTCTC	3 cut(s)	250, 291, 581
BsmBI	CGTCTC	1 cut(s)	291
BsmI	GAATGC	2 cut(s)	232, 562
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	317, 661
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	13
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	3 cut(s)	469, 582, 653
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	432, 633
BspFNI	CGCG	2 cut(s)	12, 582
BspLI	GGNNCC	2 cut(s)	177, 658
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	178, 696
BssMI	GATC	1 cut(s)	13
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	180, 697
Bst4CI	ACNGT	2 cut(s)	338, 571
BstAUI	TGTACA	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	440, 620
BstF5I	GGATG	2 cut(s)	239, 599
BstFNI	CGCG	2 cut(s)	12, 582
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	3 cut(s)	250, 291, 581
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 321
BstNI	CCWGG	2 cut(s)	180, 697
BstSCI	CCNGG	2 cut(s)	178, 695
BstSLI	GKGCMC	2 cut(s)	317, 661
BstUI	CGCG	2 cut(s)	12, 582
BstV1I	GCAGC	2 cut(s)	141, 251
BstV2I	GAAGAC	2 cut(s)	101, 220
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	239, 599
BtsIMutI	CAGTG	3 cut(s)	343, 437, 567
BtuMI	TCGCGA	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	223, 325
CviJI	RGCY	8 cut(s)	121, 154, 176, 199, 242, 397, 408, 551
CviKI_1	RGCY	8 cut(s)	121, 154, 176, 199, 242, 397, 408, 551
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	440, 620
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	178, 695
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	2 cut(s)	226, 328
FatI	CATG	2 cut(s)	222, 324
FauI	CCCGC	1 cut(s)	646
Fnu4HI	GCNGC	3 cut(s)	155, 240, 470
FokI	GGATG	2 cut(s)	246, 606
Fsp4HI	GCNGC	3 cut(s)	155, 240, 470
FspBI	CTAG	2 cut(s)	194, 200
GluI	GCNGC	3 cut(s)	155, 240, 470
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	226, 328
HinfI	GANTC	3 cut(s)	190, 388, 455
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	256, 450
Hpy188III	TCNNGA	4 cut(s)	11, 31, 480, 488
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	338, 571
HpyCH4IV	ACGT	2 cut(s)	275, 284
HpyCH4V	TGCA	7 cut(s)	109, 133, 239, 315, 361, 437, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 321
HpyF3I	CTNAG	2 cut(s)	440, 620
HpySE526I	ACGT	2 cut(s)	275, 284
Hsp92II	CATG	2 cut(s)	226, 328
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	141, 251
LweI	GCATC	2 cut(s)	490, 650
MaeI	CTAG	2 cut(s)	194, 200
MaeII	ACGT	2 cut(s)	275, 284
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	106, 136, 225
MhlI	GDGCHC	2 cut(s)	317, 661
MluCI	AATT	3 cut(s)	6, 419, 573
MlyI	GAGTC	2 cut(s)	184, 397
MnlI	CCTC	9 cut(s)	27, 36, 52, 130, 166, 495, 541, 629, 671
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	180, 697
Mva1269I	GAATGC	2 cut(s)	232, 562
MvaI	CCWGG	2 cut(s)	180, 697
MvnI	CGCG	2 cut(s)	12, 582
MwoI	GCNNNNNNNGC	2 cut(s)	236, 321
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	226, 328
NlaIV	GGNNCC	2 cut(s)	177, 658
NruI	TCGCGA	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 281
PctI	GAATGC	2 cut(s)	232, 562
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	156, 241, 471
PleI	GAGTC	2 cut(s)	184, 396
PpsI	GAGTC	2 cut(s)	184, 396
Ppu21I	YACGTR	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	178, 695
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	2 cut(s)	178, 695
PspN4I	GGNNCC	2 cut(s)	177, 658
PspPI	GGNCC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	524
SatI	GCNGC	3 cut(s)	155, 240, 470
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	184, 397
ScrFI	CCNGG	2 cut(s)	180, 697
SduI	GDGCHC	2 cut(s)	317, 661
SetI	ASST	7 cut(s)	123, 156, 244, 278, 287, 410, 487
SfaNI	GCATC	2 cut(s)	490, 650
SmiMI	CAYNNNNRTG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	6, 419, 573
SsiI	CCGC	3 cut(s)	469, 582, 653
SspI	AATATT	2 cut(s)	307, 680
SspMI	CTAG	2 cut(s)	194, 200
StyD4I	CCNGG	2 cut(s)	178, 695
TaaI	ACNGT	2 cut(s)	338, 571
TaiI	ACGT	2 cut(s)	278, 287
TaqI	TCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	6, 419, 573
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	455
TscAI	CASTG	3 cut(s)	343, 444, 574
TseI	GCWGC	2 cut(s)	154, 239
TspDTI	ATGAA	5 cut(s)	17, 239, 341, 432, 647
TspRI	CASTG	3 cut(s)	343, 444, 574
VneI	GTGCAC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	6
XcmI	CCANNNNNNNNNTGG	2 cut(s)	405, 526
XspI	CTAG	2 cut(s)	194, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.