Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006361.1

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

67076 .. 68401

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006361.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgctactttgtggcacaaggcctcttgatattcgtaacaagtctttaccagaagatggaacttgtagcatggatcataactggagtgaaagcataaacttcatggataaagtagaagagagtcctgagtcaagttacagctcaaagcttcctgcaccaagtattctgaaagatccgaaaaataggcggcatgtatcaagacctcctgaagtgataccttgtttaactccgctcgaaacttataaactccccatttcgagtgatattcctattataatgatggagcaagagataatggaggccataaatgaaaattccactgttattatacgcggagagactggatgtggtaaaacaacccaagttccacagtttctttatgaagttggcattggttcaagtgtgtctcctcttggaagtggtatccttggtgttactcaaccccgtcgcattgcagtctatgctactgctagtcgtgtggcatatgagcttggtgtacgcgtgggtgaggaggttgggtatcaagttagatatgacaaaaagataggcaaaagttgctccatcaacttcatgacggatggaatattgctacgagaactccaggttagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

203

Amino Acids

22.44

Weight (kDa)

5.53

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	243, 275
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	232
AccII	CGCG	2 cut(s)	333, 501
AciI	CCGC	3 cut(s)	187, 230, 333
AclWI	GGATC	2 cut(s)	81, 167
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	600
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	3 cut(s)	141, 148, 490
AluI	AGCT	3 cut(s)	141, 148, 490
Alw26I	GTCTC	2 cut(s)	332, 411
AlwI	GGATC	2 cut(s)	81, 167
AoxI	GGCC	2 cut(s)	20, 300
ApoI	RAATTY	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	518
BccI	CCATC	4 cut(s)	50, 274, 569, 572
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	332, 411
BfaI	CTAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	602
BpmI	CTGGAG	2 cut(s)	103, 584
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 582, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	86, 346
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	350, 583
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	86, 346
BseRI	GAGGAG	2 cut(s)	399, 524
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	333, 501
BshFI	GGCC	2 cut(s)	22, 302
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	332, 411
BsnI	GGCC	2 cut(s)	22, 302
Bsp143I	GATC	2 cut(s)	73, 172
BspACI	CCGC	3 cut(s)	187, 230, 333
BspANI	GGCC	2 cut(s)	22, 302
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	2 cut(s)	333, 501
BspHI	TCATGA	1 cut(s)	570
BspPI	GGATC	2 cut(s)	81, 167
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	86, 346
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	2 cut(s)	73, 172
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	322, 372
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	461, 555
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	350, 583
BstFNI	CGCG	2 cut(s)	333, 501
BstKTI	GATC	2 cut(s)	76, 175
BstMAI	GTCTC	2 cut(s)	332, 411
BstMBI	GATC	2 cut(s)	73, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 555
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	600
BstUI	CGCG	2 cut(s)	333, 501
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	22, 302
BtsCI	GGATG	2 cut(s)	350, 583
BtsIMutI	CAGTG	1 cut(s)	318
CciI	TCATGA	1 cut(s)	570
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	4 cut(s)	70, 103, 191, 571
CviJI	RGCY	5 cut(s)	22, 141, 148, 302, 490
CviKI_1	RGCY	5 cut(s)	22, 141, 148, 302, 490
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	75, 174
DpnII	GATC	2 cut(s)	73, 172
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	427
Eco147I	AGGCCT	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	73, 106, 194, 574
FatI	CATG	4 cut(s)	69, 102, 190, 570
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	2 cut(s)	357, 590
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	2 cut(s)	103, 584
HaeIII	GGCC	2 cut(s)	22, 302
Hin1II	CATG	4 cut(s)	73, 106, 194, 574
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	121, 128
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	2 cut(s)	168, 177
Hpy188III	TCNNGA	5 cut(s)	26, 125, 198, 206, 571
Hpy8I	GTNNAC	1 cut(s)	497
Hpy99I	CGWCG	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	322, 372
HpyCH4V	TGCA	2 cut(s)	155, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 555
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	73, 106, 194, 574
Kzo9I	GATC	2 cut(s)	73, 172
LmnI	GCTCC	2 cut(s)	283, 563
LpnPI	CCDG	7 cut(s)	63, 67, 138, 165, 219, 327, 587
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	3 cut(s)	35, 134, 433
MalI	GATC	2 cut(s)	75, 174
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	2 cut(s)	73, 172
MboII	GAAGA	2 cut(s)	65, 128
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	313
MluI	ACGCGT	1 cut(s)	499
MlyI	GAGTC	2 cut(s)	130, 137
MnlI	CCTC	6 cut(s)	33, 213, 292, 420, 502, 505
MseI	TTAA	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	2 cut(s)	333, 501
MwoI	GCNNNNNNNGC	2 cut(s)	461, 555
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	2 cut(s)	73, 172
NlaIII	CATG	4 cut(s)	73, 106, 194, 574
NspI	RCATGY	1 cut(s)	194
PagI	TCATGA	1 cut(s)	570
PceI	AGGCCT	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	129, 136
PpsI	GAGTC	2 cut(s)	129, 136
PsiI	TTATAA	2 cut(s)	243, 275
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	73, 172
SchI	GAGTC	2 cut(s)	130, 137
ScrFI	CCNGG	1 cut(s)	602
SetI	ASST	7 cut(s)	143, 150, 205, 220, 492, 516, 606
Sse9I	AATT	1 cut(s)	313
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	3 cut(s)	187, 230, 333
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	322, 372
TaqI	TCGA	2 cut(s)	234, 257
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	91, 324, 396, 559
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.