Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

82830528 .. 82831143

Gene Structure 616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATCAGCAAGAGATACTGATTAGCAGGAAGAAACTGAAAGTGTCTTCTGAAAATTTTCATAGTAGCGGCAGTGATGCTCTGTCAAGAGCTTATGCTTTGCGAGGCTATGAACTTTCCAAGAGCCAAATGGGTTTCTGCAAGGAAAATGCTCTACACCCGGAAACCATGGAGGAAATATCCAAGCTGAGAAAGCAGCTCCTCAAACTTGTCTTTAATCCAAATGGTGTTTCAGGAGGTGTGAAGGAATTTTCGTGGATCTATGGTAGTCAGAAAGATGTTGAAACTGTTTGGAGGGATGATGAGAAGCTTCTCTCAGTCAATGAGGAACAGCTCTTACACCAAGCTATCTGTGCTGGTTGGATAGATAGGGTTGCCAAACGCATTGAAGGAAGTGCATATCAGGCCTGCATGGTCAAAGAGACAGTGTTCCTCCACTGGCGGTCACCTGTTTCTAAAATTGCTCCTGAGTTTTTGGTGTACAGTGAGTTGATCCAGACAGAAACCTTTCATGTATGGCATTACTTGTGTCAGTCCAGATTGGCTCGTCAAGTATGGTCTGCTTGCTATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

191

Amino Acids

22.05

Weight (kDa)

7.66

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_NTP_bind	PF07717	113 - 169	1e-10	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 442
AclWI	GGATC	3 cut(s)	12, 266, 487
AcsI	RAATTY	2 cut(s)	55, 248
AfaI	GTAC	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	284, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	214, 246
AluBI	AGCT	6 cut(s)	92, 187, 199, 310, 334, 347
AluI	AGCT	6 cut(s)	92, 187, 199, 310, 334, 347
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	12, 266, 487
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	55, 248
Asp700I	GAANNNNTTC	2 cut(s)	57, 507
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	70, 197
BlsI	GCNGC	2 cut(s)	71, 198
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	179, 330, 459
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	4, 258, 492
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	69, 442
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	180, 329, 460
BspPI	GGATC	3 cut(s)	12, 266, 487
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	4, 258, 492
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	289, 427, 485
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	409, 565
BstDEI	CTNAG	3 cut(s)	188, 316, 468
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	7, 261, 495
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	4, 258, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 353, 404
BstPI	GGTNACC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	4 cut(s)	79, 432, 436, 490
Cac8I	GCNNGC	2 cut(s)	409, 565
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	3 cut(s)	169, 412, 512
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	188, 316, 468
DpnI	GATC	3 cut(s)	6, 260, 494
DpnII	GATC	3 cut(s)	4, 258, 492
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	172, 415, 515
FatI	CATG	3 cut(s)	168, 411, 511
Fnu4HI	GCNGC	2 cut(s)	70, 197
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	70, 197
GluI	GCNGC	2 cut(s)	70, 197
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	172, 415, 515
HindIII	AAGCTT	1 cut(s)	308
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	52, 273
Hpy188III	TCNNGA	5 cut(s)	87, 234, 467, 496, 537
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	238, 383
HpyCH4III	ACNGT	3 cut(s)	289, 427, 485
HpyCH4V	TGCA	3 cut(s)	141, 398, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 353, 404
HpyF3I	CTNAG	3 cut(s)	188, 316, 468
Hsp92II	CATG	3 cut(s)	172, 415, 515
Kzo9I	GATC	3 cut(s)	4, 258, 492
LmnI	GCTCC	2 cut(s)	204, 469
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	3 cut(s)	6, 260, 494
MboI	GATC	3 cut(s)	4, 258, 492
MboII	GAAGA	2 cut(s)	39, 43
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	3 cut(s)	55, 248, 459
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	7 cut(s)	98, 166, 212, 230, 288, 319, 443
MroXI	GAANNNNTTC	2 cut(s)	57, 507
MseI	TTAA	1 cut(s)	216
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	193, 353, 404
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	4, 258, 492
NlaIII	CATG	3 cut(s)	172, 415, 515
NmuCI	GTSAC	1 cut(s)	444
PceI	AGGCCT	1 cut(s)	407
PdmI	GAANNNNTTC	2 cut(s)	57, 507
PkrI	GCNGC	2 cut(s)	71, 198
PspEI	GGTNACC	1 cut(s)	444
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	70, 197
Sau3AI	GATC	3 cut(s)	4, 258, 492
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	9 cut(s)	94, 189, 201, 241, 312, 336, 349, 451, 509
SfaNI	GCATC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	55, 248, 459
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	2 cut(s)	69, 442
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	289, 427, 485
TasI	AATT	3 cut(s)	55, 248, 459
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	4 cut(s)	79, 432, 443, 490
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	3 cut(s)	50, 126, 500
TspRI	CASTG	4 cut(s)	79, 432, 443, 490
XapI	RAATTY	2 cut(s)	55, 248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	57, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.