ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2531 |
| AatII | GACGTC | 2 cut(s) | 3460, 4001 |
| Acc36I | ACCTGC | 1 cut(s) | 3770 |
| AccB1I | GGYRCC | 3 cut(s) | 77, 1699, 3535 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3608 |
| AccBSI | CCGCTC | 3 cut(s) | 1288, 2207, 2623 |
| AccI | GTMKAC | 3 cut(s) | 2112, 3061, 3432 |
| AccII | CGCG | 2 cut(s) | 1623, 2217 |
| AclWI | GGATC | 3 cut(s) | 900, 1484, 3638 |
| AcoI | YGGCCR | 3 cut(s) | 2259, 3700, 3741 |
| AcsI | RAATTY | 4 cut(s) | 1196, 1762, 2963, 3041 |
| AcuI | CTGAAG | 6 cut(s) | 248, 1214, 2016, 2051, 3342, 3999 |
| AcvI | CACGTG | 1 cut(s) | 1328 |
| AcyI | GRCGYC | 2 cut(s) | 3457, 3998 |
| AdeI | CACNNNGTG | 1 cut(s) | 1049 |
| AfaI | GTAC | 3 cut(s) | 387, 1339, 2376 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 144, 219, 501, 2525, 2597, 3608, 3653 |
| AflIII | ACRYGT | 3 cut(s) | 684, 1327, 3193 |
| AgeI | ACCGGT | 1 cut(s) | 1498 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3456, 3670 |
| AhlI | ACTAGT | 1 cut(s) | 3479 |
| AjnI | CCWGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1005, 1037 |
| AleI | CACNNNNGTG | 1 cut(s) | 2267 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1381, 1413, 2330, 2362 |
| Alw21I | GWGCWC | 2 cut(s) | 3249, 3527 |
| Alw26I | GTCTC | 4 cut(s) | 302, 962, 3124, 3522 |
| Alw44I | GTGCAC | 1 cut(s) | 3523 |
| AlwI | GGATC | 3 cut(s) | 900, 1484, 3638 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2108, 2804, 2807, 3419 |
| Ama87I | CYCGRG | 1 cut(s) | 3731 |
| ApaLI | GTGCAC | 1 cut(s) | 3523 |
| ApoI | RAATTY | 4 cut(s) | 1196, 1762, 2963, 3041 |
| AseI | ATTAAT | 1 cut(s) | 1794 |
| AsiGI | ACCGGT | 1 cut(s) | 1498 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1321, 2023, 2062, 2951 |
| AspLEI | GCGC | 1 cut(s) | 121 |
| AspS9I | GGNCC | 8 cut(s) | 757, 1626, 1828, 2432, 2515, 2682, 3611, 3808 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 746, 808, 1190 |
| AsuII | TTCGAA | 1 cut(s) | 335 |
| AsuNHI | GCTAGC | 2 cut(s) | 128, 2782 |
| AvaI | CYCGRG | 1 cut(s) | 3731 |
| AvaII | GGWCC | 3 cut(s) | 757, 2515, 3611 |
| AxyI | CCTNAGG | 2 cut(s) | 480, 867 |
| BaeGI | GKGCMC | 2 cut(s) | 80, 3527 |
| BalI | TGGCCA | 1 cut(s) | 2261 |
| BanI | GGYRCC | 3 cut(s) | 77, 1699, 3535 |
| BanII | GRGCYC | 3 cut(s) | 1955, 3035, 3249 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3234, 3266 |
| BauI | CACGAG | 1 cut(s) | 1341 |
| BbrPI | CACGTG | 1 cut(s) | 1328 |
| BbsI | GAAGAC | 5 cut(s) | 324, 572, 1118, 1464, 2668 |
| Bbv12I | GWGCWC | 2 cut(s) | 3249, 3527 |
| BbvCI | CCTCAGC | 1 cut(s) | 1770 |
| BccI | CCATC | 9 cut(s) | 14, 748, 904, 1199, 1202, 1839, 1940, 2591, 2651 |
| BceAI | ACGGC | 3 cut(s) | 141, 1062, 3715 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 25, 59 |
| BciT130I | CCWGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| BciVI | GTATCC | 4 cut(s) | 1543, 1720, 2578, 3541 |
| BclI | TGATCA | 1 cut(s) | 1402 |
| BcoDI | GTCTC | 4 cut(s) | 302, 962, 3124, 3522 |
| BcuI | ACTAGT | 1 cut(s) | 3479 |
| BfaI | CTAG | 8 cut(s) | 129, 1029, 2675, 2718, 2783, 2909, 3480, 3896 |
| BfmI | CTRYAG | 4 cut(s) | 326, 2109, 2199, 2463 |
| BfoI | RGCGCY | 1 cut(s) | 122 |
| BfuAI | ACCTGC | 1 cut(s) | 3770 |
| BfuI | GTATCC | 4 cut(s) | 1543, 1720, 2578, 3541 |
| BglII | AGATCT | 1 cut(s) | 3722 |
| BlpI | GCTNAGC | 1 cut(s) | 1101 |
| Bme1390I | CCNGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| Bme18I | GGWCC | 3 cut(s) | 757, 2515, 3611 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3456, 3670 |
| BmeT110I | CYCGRG | 1 cut(s) | 3731 |
| BmgT120I | GGNCC | 8 cut(s) | 757, 1626, 1828, 2432, 2515, 2682, 3611, 3808 |
| BmiI | GGNNCC | 6 cut(s) | 79, 1627, 1701, 2433, 2517, 3537 |
| BmrFI | CCNGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| BmrI | ACTGGG | 4 cut(s) | 96, 1656, 3029, 3867 |
| BmsI | GCATC | 8 cut(s) | 630, 762, 1729, 1885, 2074, 2402, 2712, 2974 |
| BmtI | GCTAGC | 2 cut(s) | 132, 2786 |
| BmuI | ACTGGG | 4 cut(s) | 96, 1656, 3029, 3867 |
| BpiI | GAAGAC | 5 cut(s) | 324, 572, 1118, 1464, 2668 |
| BpmI | CTGGAG | 3 cut(s) | 2577, 2787, 3095 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1770 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1101 |
| Bpu14I | TTCGAA | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 4 cut(s) | 137, 576, 2335, 2767 |
| Bsa29I | ATCGAT | 2 cut(s) | 522, 749 |
| BsaAI | YACGTR | 3 cut(s) | 763, 1328, 1685 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1863 |
| BsaHI | GRCGYC | 2 cut(s) | 3457, 3998 |
| BsaI | GGTCTC | 1 cut(s) | 3522 |
| BsaJI | CCNNGG | 6 cut(s) | 824, 1899, 2294, 2607, 2685, 3738 |
| BsaWI | WCCGGW | 2 cut(s) | 1498, 2318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3071, 3101 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 144, 219, 501, 2525, 2597, 3608, 3653 |
| Bse118I | RCCGGY | 1 cut(s) | 1498 |
| Bse1I | ACTGG | 9 cut(s) | 102, 466, 976, 1651, 1743, 1932, 3035, 3873, 3905 |
| Bse21I | CCTNAGG | 2 cut(s) | 480, 867 |
| Bse3DI | GCAATG | 2 cut(s) | 2165, 2196 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1863 |
| BseBI | CCWGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| BseCI | ATCGAT | 2 cut(s) | 522, 749 |
| BseDI | CCNNGG | 6 cut(s) | 824, 1899, 2294, 2607, 2685, 3738 |
| BseGI | GGATG | 6 cut(s) | 247, 1891, 1900, 1909, 2617, 2727 |
| BseJI | GATNNNNATC | 1 cut(s) | 1863 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 144, 219, 501, 2525, 2597, 3608, 3653 |
| BseMI | GCAATG | 2 cut(s) | 2165, 2196 |
| BseMII | CTCAG | 7 cut(s) | 471, 858, 1013, 1761, 3086, 3411, 3806 |
| BseNI | ACTGG | 9 cut(s) | 102, 466, 976, 1651, 1743, 1932, 3035, 3873, 3905 |
| BseRI | GAGGAG | 7 cut(s) | 160, 179, 577, 1024, 2024, 2580, 4018 |
| BseSI | GKGCMC | 2 cut(s) | 80, 3527 |
| BseYI | CCCAGC | 4 cut(s) | 138, 213, 2975, 3810 |
| BsgI | GTGCAG | 4 cut(s) | 551, 804, 1026, 2430 |
| Bsh1236I | CGCG | 2 cut(s) | 1623, 2217 |
| BshNI | GGYRCC | 3 cut(s) | 77, 1699, 3535 |
| BshTI | ACCGGT | 1 cut(s) | 1498 |
| BshVI | ATCGAT | 2 cut(s) | 522, 749 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3249, 3527 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3731 |
| BsiSI | CCGG | 2 cut(s) | 1499, 2319 |
| BslFI | GGGAC | 1 cut(s) | 2501 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 144, 219, 501, 2525, 2597, 3608, 3653 |
| BsmAI | GTCTC | 4 cut(s) | 302, 962, 3124, 3522 |
| BsmFI | GGGAC | 1 cut(s) | 2501 |
| BsmI | GAATGC | 1 cut(s) | 1323 |
| Bso31I | GGTCTC | 1 cut(s) | 3522 |
| BsoBI | CYCGRG | 1 cut(s) | 3731 |
| Bsp119I | TTCGAA | 1 cut(s) | 335 |
| Bsp1286I | GDGCHC | 5 cut(s) | 80, 1955, 3035, 3249, 3527 |
| Bsp143I | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1101 |
| Bsp19I | CCATGG | 2 cut(s) | 2685, 3738 |
| BspCNI | CTCAG | 7 cut(s) | 472, 859, 1012, 1762, 3087, 3412, 3807 |
| BspDI | ATCGAT | 2 cut(s) | 522, 749 |
| BspFNI | CGCG | 2 cut(s) | 1623, 2217 |
| BspHI | TCATGA | 4 cut(s) | 1200, 1282, 1486, 2541 |
| BspLI | GGNNCC | 6 cut(s) | 79, 1627, 1701, 2433, 2517, 3537 |
| BspMAI | CTGCAG | 3 cut(s) | 330, 2203, 2467 |
| BspMI | ACCTGC | 1 cut(s) | 3770 |
| BspOI | GCTAGC | 2 cut(s) | 132, 2786 |
| BspPI | GGATC | 3 cut(s) | 900, 1484, 3638 |
| BspQI | GCTCTTC | 2 cut(s) | 2410, 3237 |
| BspT104I | TTCGAA | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 3 cut(s) | 77, 1699, 3535 |
| BspTNI | GGTCTC | 1 cut(s) | 3522 |
| BsrBI | CCGCTC | 3 cut(s) | 1288, 2207, 2623 |
| BsrDI | GCAATG | 2 cut(s) | 2165, 2196 |
| BsrFI | RCCGGY | 1 cut(s) | 1498 |
| BsrI | ACTGG | 9 cut(s) | 102, 466, 976, 1651, 1743, 1932, 3035, 3873, 3905 |
| BssAI | RCCGGY | 1 cut(s) | 1498 |
| BssECI | CCNNGG | 6 cut(s) | 824, 1899, 2294, 2607, 2685, 3738 |
| BssMI | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| BssNAI | GTATAC | 1 cut(s) | 3433 |
| BssNI | GRCGYC | 2 cut(s) | 3457, 3998 |
| BssSI | CACGAG | 1 cut(s) | 1341 |
| BssT1I | CCWWGG | 3 cut(s) | 2607, 2685, 3738 |
| Bst1107I | GTATAC | 1 cut(s) | 3433 |
| Bst2BI | CACGAG | 1 cut(s) | 1341 |
| Bst2UI | CCWGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| Bst6I | CTCTTC | 5 cut(s) | 327, 1042, 2410, 2753, 3237 |
| BstACI | GRCGYC | 2 cut(s) | 3457, 3998 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1091, 2399, 2804, 2807 |
| BstBAI | YACGTR | 3 cut(s) | 763, 1328, 1685 |
| BstBI | TTCGAA | 1 cut(s) | 335 |
| BstDSI | CCRYGG | 2 cut(s) | 2685, 3738 |
| BstF5I | GGATG | 6 cut(s) | 247, 1891, 1900, 1909, 2617, 2727 |
| BstFNI | CGCG | 2 cut(s) | 1623, 2217 |
| BstH2I | RGCGCY | 1 cut(s) | 122 |
| BstHHI | GCGC | 1 cut(s) | 121 |
| BstKTI | GATC | 8 cut(s) | 522, 526, 895, 1405, 1492, 1867, 3646, 3725 |
| BstMAI | GTCTC | 4 cut(s) | 302, 962, 3124, 3522 |
| BstMBI | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| BstNI | CCWGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| BstNSI | RCATGY | 6 cut(s) | 688, 857, 2174, 3197, 3367, 3469 |
| BstSCI | CCNGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| BstSFI | CTRYAG | 4 cut(s) | 326, 2109, 2199, 2463 |
| BstSLI | GKGCMC | 2 cut(s) | 80, 3527 |
| BstSNI | TACGTA | 1 cut(s) | 1685 |
| BstUI | CGCG | 2 cut(s) | 1623, 2217 |
| BstV2I | GAAGAC | 5 cut(s) | 324, 572, 1118, 1464, 2668 |
| BstX2I | RGATCY | 2 cut(s) | 892, 3722 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2269 |
| BstYI | RGATCY | 2 cut(s) | 892, 3722 |
| BstZ17I | GTATAC | 1 cut(s) | 3433 |
| Bsu15I | ATCGAT | 2 cut(s) | 522, 749 |
| Bsu36I | CCTNAGG | 2 cut(s) | 480, 867 |
| BsuI | GTATCC | 4 cut(s) | 1543, 1720, 2578, 3541 |
| BsuTUI | ATCGAT | 2 cut(s) | 522, 749 |
| BtgI | CCRYGG | 2 cut(s) | 2685, 3738 |
| BtsCI | GGATG | 6 cut(s) | 247, 1891, 1900, 1909, 2617, 2727 |
| BtsI | GCAGTG | 2 cut(s) | 2986, 3017 |
| BveI | ACCTGC | 1 cut(s) | 3770 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2108, 2804, 2807, 3419 |
| CciI | TCATGA | 4 cut(s) | 1200, 1282, 1486, 2541 |
| CfoI | GCGC | 1 cut(s) | 121 |
| Cfr10I | RCCGGY | 1 cut(s) | 1498 |
| Cfr13I | GGNCC | 8 cut(s) | 757, 1626, 1828, 2432, 2515, 2682, 3611, 3808 |
| ClaI | ATCGAT | 2 cut(s) | 522, 749 |
| Csp6I | GTAC | 3 cut(s) | 386, 1338, 2375 |
| CspAI | ACCGGT | 1 cut(s) | 1498 |
| CviQI | GTAC | 3 cut(s) | 386, 1338, 2375 |
| DpnI | GATC | 8 cut(s) | 521, 525, 894, 1404, 1491, 1866, 3645, 3724 |
| DpnII | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| DraI | TTTAAA | 1 cut(s) | 2070 |
| DraIII | CACNNNGTG | 1 cut(s) | 1049 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2531 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3456, 3670 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2531 |
| EaeI | YGGCCR | 3 cut(s) | 2259, 3700, 3741 |
| Eam1104I | CTCTTC | 5 cut(s) | 327, 1042, 2410, 2753, 3237 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3456, 3670 |
| EarI | CTCTTC | 5 cut(s) | 327, 1042, 2410, 2753, 3237 |
| Ecl136II | GAGCTC | 1 cut(s) | 3247 |
| Eco105I | TACGTA | 1 cut(s) | 1685 |
| Eco130I | CCWWGG | 3 cut(s) | 2607, 2685, 3738 |
| Eco147I | AGGCCT | 3 cut(s) | 284, 829, 865 |
| Eco24I | GRGCYC | 3 cut(s) | 1955, 3035, 3249 |
| Eco31I | GGTCTC | 1 cut(s) | 3522 |
| Eco32I | GATATC | 2 cut(s) | 1969, 3353 |
| Eco47I | GGWCC | 3 cut(s) | 757, 2515, 3611 |
| Eco53kI | GAGCTC | 1 cut(s) | 3247 |
| Eco57I | CTGAAG | 6 cut(s) | 248, 1214, 2016, 2051, 3342, 3999 |
| Eco72I | CACGTG | 1 cut(s) | 1328 |
| Eco81I | CCTNAGG | 2 cut(s) | 480, 867 |
| Eco88I | CYCGRG | 1 cut(s) | 3731 |
| EcoICRI | GAGCTC | 1 cut(s) | 3247 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2432, 2515 |
| EcoRI | GAATTC | 1 cut(s) | 3041 |
| EcoRII | CCWGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| EcoRV | GATATC | 2 cut(s) | 1969, 3353 |
| EcoT14I | CCWWGG | 3 cut(s) | 2607, 2685, 3738 |
| EcoT22I | ATGCAT | 2 cut(s) | 1380, 3471 |
| EcoT38I | GRGCYC | 3 cut(s) | 1955, 3035, 3249 |
| ErhI | CCWWGG | 3 cut(s) | 2607, 2685, 3738 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3445, 3477 |
| FaqI | GGGAC | 1 cut(s) | 2501 |
| FauI | CCCGC | 4 cut(s) | 17, 498, 1616, 1819 |
| FauNDI | CATATG | 2 cut(s) | 1114, 2368 |
| FbaI | TGATCA | 1 cut(s) | 1402 |
| FblI | GTMKAC | 3 cut(s) | 2112, 3061, 3432 |
| FokI | GGATG | 6 cut(s) | 254, 1898, 1907, 1916, 2624, 2734 |
| FriOI | GRGCYC | 3 cut(s) | 1955, 3035, 3249 |
| FspBI | CTAG | 8 cut(s) | 129, 1029, 2675, 2718, 2783, 2909, 3480, 3896 |
| GlaI | GCGC | 1 cut(s) | 120 |
| GsaI | CCCAGC | 4 cut(s) | 142, 217, 2979, 3814 |
| GsuI | CTGGAG | 3 cut(s) | 2577, 2787, 3095 |
| HaeII | RGCGCY | 1 cut(s) | 122 |
| HapII | CCGG | 2 cut(s) | 1499, 2319 |
| HhaI | GCGC | 1 cut(s) | 121 |
| Hin1I | GRCGYC | 2 cut(s) | 3457, 3998 |
| Hin6I | GCGC | 1 cut(s) | 119 |
| HinP1I | GCGC | 1 cut(s) | 119 |
| HindIII | AAGCTT | 4 cut(s) | 299, 411, 1478, 2046 |
| HpaII | CCGG | 2 cut(s) | 1499, 2319 |
| HphI | GGTGA | 4 cut(s) | 41, 746, 808, 1190 |
| Hpy166II | GTNNAC | 5 cut(s) | 2113, 2524, 3062, 3433, 3525 |
| Hpy188I | TCNGA | 8 cut(s) | 1233, 1434, 1756, 1903, 1912, 2083, 2104, 3322 |
| Hpy8I | GTNNAC | 5 cut(s) | 2113, 2524, 3062, 3433, 3525 |
| Hpy99I | CGWCG | 2 cut(s) | 1946, 4003 |
| HpyCH4IV | ACGT | 7 cut(s) | 762, 1327, 1684, 2245, 2407, 3457, 3998 |
| HpySE526I | ACGT | 7 cut(s) | 762, 1327, 1684, 2245, 2407, 3457, 3998 |
| Hsp92I | GRCGYC | 2 cut(s) | 3457, 3998 |
| HspAI | GCGC | 1 cut(s) | 119 |
| Ksp22I | TGATCA | 1 cut(s) | 1402 |
| Kzo9I | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| LguI | GCTCTTC | 2 cut(s) | 2410, 3237 |
| LmnI | GCTCC | 9 cut(s) | 913, 1037, 1193, 1290, 1920, 2730, 2768, 3252, 3625 |
| LweI | GCATC | 8 cut(s) | 630, 762, 1729, 1885, 2074, 2402, 2712, 2974 |
| MaeI | CTAG | 8 cut(s) | 129, 1029, 2675, 2718, 2783, 2909, 3480, 3896 |
| MaeII | ACGT | 7 cut(s) | 762, 1327, 1684, 2245, 2407, 3457, 3998 |
| MalI | GATC | 8 cut(s) | 521, 525, 894, 1404, 1491, 1866, 3645, 3724 |
| MbiI | CCGCTC | 3 cut(s) | 1288, 2207, 2623 |
| MboI | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| MfeI | CAATTG | 1 cut(s) | 3648 |
| MflI | RGATCY | 2 cut(s) | 892, 3722 |
| MhlI | GDGCHC | 5 cut(s) | 80, 1955, 3035, 3249, 3527 |
| MlsI | TGGCCA | 1 cut(s) | 2261 |
| MluNI | TGGCCA | 1 cut(s) | 2261 |
| MlyI | GAGTC | 6 cut(s) | 304, 365, 578, 2108, 2713, 3743 |
| MmeI | TCCRAC | 5 cut(s) | 141, 216, 1872, 2100, 2609 |
| Mox20I | TGGCCA | 1 cut(s) | 2261 |
| Mph1103I | ATGCAT | 2 cut(s) | 1380, 3471 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1321, 2023, 2062, 2951 |
| MscI | TGGCCA | 1 cut(s) | 2261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2267 |
| Msp20I | TGGCCA | 1 cut(s) | 2261 |
| MspA1I | CMGCKG | 5 cut(s) | 142, 1826, 2804, 3814, 3921 |
| MspI | CCGG | 2 cut(s) | 1499, 2319 |
| MspR9I | CCNGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| MunI | CAATTG | 1 cut(s) | 3648 |
| Mva1269I | GAATGC | 1 cut(s) | 1323 |
| MvaI | CCWGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| MvnI | CGCG | 2 cut(s) | 1623, 2217 |
| NcoI | CCATGG | 2 cut(s) | 2685, 3738 |
| NdeI | CATATG | 2 cut(s) | 1114, 2368 |
| NdeII | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| NheI | GCTAGC | 2 cut(s) | 128, 2782 |
| NlaIV | GGNNCC | 6 cut(s) | 79, 1627, 1701, 2433, 2517, 3537 |
| NmeAIII | GCCGAG | 1 cut(s) | 3512 |
| NmuCI | GTSAC | 5 cut(s) | 418, 452, 473, 1642, 2438 |
| NsiI | ATGCAT | 2 cut(s) | 1380, 3471 |
| NspI | RCATGY | 6 cut(s) | 688, 857, 2174, 3197, 3367, 3469 |
| NspV | TTCGAA | 1 cut(s) | 335 |
| OliI | CACNNNNGTG | 1 cut(s) | 2267 |
| PaeI | GCATGC | 1 cut(s) | 3367 |
| PaeR7I | CTCGAG | 1 cut(s) | 3731 |
| PagI | TCATGA | 4 cut(s) | 1200, 1282, 1486, 2541 |
| PceI | AGGCCT | 3 cut(s) | 284, 829, 865 |
| PciI | ACATGT | 2 cut(s) | 684, 3193 |
| PciSI | GCTCTTC | 2 cut(s) | 2410, 3237 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1333 |
| PctI | GAATGC | 1 cut(s) | 1323 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1321, 2023, 2062, 2951 |
| PfeI | GAWTC | 5 cut(s) | 1907, 2635, 3799, 3868, 3987 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3608 |
| PinAI | ACCGGT | 1 cut(s) | 1498 |
| PleI | GAGTC | 6 cut(s) | 304, 364, 578, 2108, 2712, 3742 |
| PmaCI | CACGTG | 1 cut(s) | 1328 |
| PmlI | CACGTG | 1 cut(s) | 1328 |
| PpsI | GAGTC | 6 cut(s) | 304, 364, 578, 2108, 2712, 3742 |
| Ppu21I | YACGTR | 3 cut(s) | 763, 1328, 1685 |
| PpuMI | RGGWCCY | 1 cut(s) | 2515 |
| PscI | ACATGT | 2 cut(s) | 684, 3193 |
| PshBI | ATTAAT | 1 cut(s) | 1794 |
| Psp124BI | GAGCTC | 1 cut(s) | 3249 |
| Psp5II | RGGWCCY | 1 cut(s) | 2515 |
| Psp6I | CCWGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| PspCI | CACGTG | 1 cut(s) | 1328 |
| PspFI | CCCAGC | 4 cut(s) | 138, 213, 2975, 3810 |
| PspGI | CCWGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| PspN4I | GGNNCC | 6 cut(s) | 79, 1627, 1701, 2433, 2517, 3537 |
| PspPI | GGNCC | 8 cut(s) | 757, 1626, 1828, 2432, 2515, 2682, 3611, 3808 |
| PspPPI | RGGWCCY | 1 cut(s) | 2515 |
| PstI | CTGCAG | 3 cut(s) | 330, 2203, 2467 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2108, 2804, 2807, 3419 |
| PsuI | RGATCY | 2 cut(s) | 892, 3722 |
| PvuII | CAGCTG | 2 cut(s) | 2804, 3814 |
| RsaI | GTAC | 3 cut(s) | 387, 1339, 2376 |
| RsaNI | GTAC | 3 cut(s) | 386, 1338, 2375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2267 |
| SacI | GAGCTC | 1 cut(s) | 3249 |
| SapI | GCTCTTC | 2 cut(s) | 2410, 3237 |
| Sau3AI | GATC | 8 cut(s) | 519, 523, 892, 1402, 1489, 1864, 3643, 3722 |
| Sau96I | GGNCC | 8 cut(s) | 757, 1626, 1828, 2432, 2515, 2682, 3611, 3808 |
| SchI | GAGTC | 6 cut(s) | 304, 365, 578, 2108, 2713, 3743 |
| ScrFI | CCNGG | 5 cut(s) | 1732, 2160, 2295, 2436, 3704 |
| SduI | GDGCHC | 5 cut(s) | 80, 1955, 3035, 3249, 3527 |
| SfaNI | GCATC | 8 cut(s) | 630, 762, 1729, 1885, 2074, 2402, 2712, 2974 |
| SfcI | CTRYAG | 4 cut(s) | 326, 2109, 2199, 2463 |
| Sfr274I | CTCGAG | 1 cut(s) | 3731 |
| SfuI | TTCGAA | 1 cut(s) | 335 |
| SinI | GGWCC | 3 cut(s) | 757, 2515, 3611 |
| SlaI | CTCGAG | 1 cut(s) | 3731 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2267 |
| SmlI | CTYRAG | 5 cut(s) | 152, 591, 2350, 2746, 3731 |
| SmoI | CTYRAG | 5 cut(s) | 152, 591, 2350, 2746, 3731 |
| SnaBI | TACGTA | 1 cut(s) | 1685 |
| SpeI | ACTAGT | 1 cut(s) | 3479 |
| SphI | GCATGC | 1 cut(s) | 3367 |
| SseBI | AGGCCT | 3 cut(s) | 284, 829, 865 |
| SspI | AATATT | 2 cut(s) | 1215, 2557 |
| SspMI | CTAG | 8 cut(s) | 129, 1029, 2675, 2718, 2783, 2909, 3480, 3896 |
| SstI | GAGCTC | 1 cut(s) | 3249 |
| StuI | AGGCCT | 3 cut(s) | 284, 829, 865 |
| StyD4I | CCNGG | 5 cut(s) | 1730, 2158, 2293, 2434, 3702 |
| StyI | CCWWGG | 3 cut(s) | 2607, 2685, 3738 |
| TaiI | ACGT | 7 cut(s) | 765, 1330, 1687, 2248, 2410, 3460, 4001 |
| TaqI | TCGA | 9 cut(s) | 335, 522, 536, 749, 2313, 2649, 3349, 3732, 4001 |
| TaqII | GACCGA | 4 cut(s) | 1220, 3504, 3594, 3681 |
| TatI | WGTACW | 1 cut(s) | 2374 |
| TauI | GCSGC | 2 cut(s) | 2207, 3746 |
| TfiI | GAWTC | 5 cut(s) | 1907, 2635, 3799, 3868, 3987 |
| TseFI | GTSAC | 5 cut(s) | 418, 452, 473, 1642, 2438 |
| Tsp45I | GTSAC | 5 cut(s) | 418, 452, 473, 1642, 2438 |
| TspGWI | ACGGA | 4 cut(s) | 1423, 2945, 2983, 3560 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3608 |
| VneI | GTGCAC | 1 cut(s) | 3523 |
| VpaK11BI | GGWCC | 3 cut(s) | 757, 2515, 3611 |
| VspI | ATTAAT | 1 cut(s) | 1794 |
| XapI | RAATTY | 4 cut(s) | 1196, 1762, 2963, 3041 |
| XceI | RCATGY | 6 cut(s) | 688, 857, 2174, 3197, 3367, 3469 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1450 |
| XhoI | CTCGAG | 1 cut(s) | 3731 |
| XmiI | GTMKAC | 3 cut(s) | 2112, 3061, 3432 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1321, 2023, 2062, 2951 |
| XspI | CTAG | 8 cut(s) | 129, 1029, 2675, 2718, 2783, 2909, 3480, 3896 |
| ZraI | GACGTC | 2 cut(s) | 3458, 3999 |
| Zsp2I | ATGCAT | 2 cut(s) | 1380, 3471 |