Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

1196179 .. 1197272

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCTCGTTACCCCATGAGCCCTCGCCACCCTAGGATGCTCCTTACTGTTATTCAAGTCTTGAGTAAGAAGAAGAGTTCTGGAGCTAATTTAGTGCTAGCATACGCAGTTGCAGCAGCTGCTGCTTTGAGTTTGTCAAATCCTTTTGTCAGGCAGTTTGAAGATAGCCACAAAGAAAGCCATGACTTGAATGAGAACGGGAACATTAAAGTTATAGACAAGCTAGAGAAGCCGGGGAGGAAGAAACTAAAAGAAACTGTGAAAATGTTCCGTGAAAATTTTTCCAATCCCAGCAGTGATGCTCTGTCCGTAGCTTTTGCTTTGCAGTGCTATGAACTTGCAGAGAGCCCAGTGGAATTCTGTAACGCCAATGGTCTACACCCGAAAACAATGGAGGAAATGTCCAAGCTGAGAAAGCAACTACTCCATCTTGTCTTTAATCAAAGTGGTGTTTCTGGTGACGAGAATGACTTGTCATGGACTTTTGGAAGTCGGGAAGATGTTGAACATGTTTGGAAGGTTTCCCACAGTAAGAACCCTCTTTCATTGTATGAAGAAGAACTCCTACGCCAAGTTATCTGTGCTGGTTGGGCAGATAGGATTGGATTGTTGAGTATGCTCGGCGTTGCCATGTTTAAGATCTGTTCTCAAGTCTATGGCGCCCCTCCGGCTACTGTTTTAAGGCCAGAGGCAGCAGGTCAAGCACGGGTAGGGAATCTTTTGGCCAAGCTGAGAATAAAAAAGATAGACAGTTGCGCTATGTTAAGAAAGGTCTGGACGGAGAATCTCAGCGAATTGAAAACAGAAATCCTAGACTGGTTCCAAGAGAGTTCCCGCCCAAGTATTTTGAAACTCTTTGGTTGCAAATGCACACTTAAGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

296

Amino Acids

33.15

Weight (kDa)

9.08

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HA2_C	PF21010	7 - 103	1.1e-06	Helicase associated domain (HA2), ratchet-like
DHX37_C	PF23362	216 - 284	4.2e-12	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	686
AccB1I	GGYRCC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	1 cut(s)	835
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	277, 356
AcyI	GRCGYC	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	6 cut(s)	56, 161, 190, 506, 799, 850
AluBI	AGCT	6 cut(s)	86, 119, 223, 314, 409, 730
AluI	AGCT	6 cut(s)	86, 119, 223, 314, 409, 730
AlwNI	CAGNNNCTG	2 cut(s)	119, 122
AoxI	GGCC	2 cut(s)	683, 723
ApeKI	GCWGC	5 cut(s)	113, 116, 119, 122, 692
ApoI	RAATTY	2 cut(s)	277, 356
Asp700I	GAANNNNTTC	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	662, 758
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	470
AsuNHI	GCTAGC	1 cut(s)	97
AvrII	CCTAGG	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	23, 350
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbvI	GCAGC	5 cut(s)	106, 109, 125, 128, 704
BccI	CCATC	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	234
BfaI	CTAG	4 cut(s)	33, 98, 224, 812
BfoI	RGCGCY	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	686
BglI	GCCNNNNNGGC	1 cut(s)	668
BglII	AGATCT	1 cut(s)	639
BisI	GCNGC	5 cut(s)	114, 117, 120, 123, 693
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	5 cut(s)	115, 118, 121, 124, 694
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	661, 821
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	27, 289
BmtI	GCTAGC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	82, 633
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	660
BsaJI	CCNNGG	2 cut(s)	32, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse1I	ACTGG	2 cut(s)	350, 821
BseDI	CCNNGG	2 cut(s)	32, 233
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	401, 722, 802
BseNI	ACTGG	2 cut(s)	350, 821
BseXI	GCAGC	5 cut(s)	106, 109, 125, 128, 704
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	685, 725
BshNI	GGYRCC	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	233, 668
BsnI	GGCC	2 cut(s)	685, 725
Bsp1286I	GDGCHC	2 cut(s)	23, 350
Bsp143I	GATC	1 cut(s)	639
BspACI	CCGC	1 cut(s)	835
BspANI	GGCC	2 cut(s)	685, 725
BspCNI	CTCAG	3 cut(s)	402, 723, 801
BspLI	GGNNCC	2 cut(s)	661, 821
BspMI	ACCTGC	1 cut(s)	686
BspOI	GCTAGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	659
BspTI	CTTAAG	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	350, 821
BssECI	CCNNGG	2 cut(s)	32, 233
BssMI	GATC	1 cut(s)	639
BssNI	GRCGYC	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	5 cut(s)	49, 259, 530, 676, 752
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	660
BstAFI	CTTAAG	1 cut(s)	875
BstAPI	GCANNNNNTGC	2 cut(s)	119, 122
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	410, 731, 788
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	2 cut(s)	662, 758
BstKTI	GATC	1 cut(s)	642
BstMBI	GATC	1 cut(s)	639
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 119, 122, 229, 415, 590, 668, 701
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	5 cut(s)	106, 109, 125, 128, 704
BstX2I	RGATCY	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	685, 725
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	2 cut(s)	301, 332
BtsIMutI	CAGTG	3 cut(s)	301, 332, 357
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	2 cut(s)	119, 122
CfoI	GCGC	2 cut(s)	662, 758
CviAII	CATG	5 cut(s)	16, 182, 477, 509, 631
DdeI	CTNAG	3 cut(s)	410, 731, 788
DinI	GGCGCC	1 cut(s)	661
DpnI	GATC	1 cut(s)	641
DpnII	GATC	1 cut(s)	639
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	23, 350
EcoRI	GAATTC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	23, 350
EgeI	GGCGCC	1 cut(s)	661
EheI	GGCGCC	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	5 cut(s)	19, 185, 480, 512, 634
FatI	CATG	5 cut(s)	15, 181, 476, 508, 630
FauI	CCCGC	1 cut(s)	842
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 693
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	2 cut(s)	23, 350
Fsp4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 693
FspBI	CTAG	4 cut(s)	33, 98, 224, 812
GlaI	GCGC	2 cut(s)	661, 757
GluI	GCNGC	5 cut(s)	114, 117, 120, 123, 693
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	685, 725
HapII	CCGG	2 cut(s)	233, 668
HhaI	GCGC	2 cut(s)	662, 758
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	5 cut(s)	19, 185, 480, 512, 634
Hin6I	GCGC	2 cut(s)	660, 756
HinP1I	GCGC	2 cut(s)	660, 756
HinfI	GANTC	2 cut(s)	715, 784
HpaII	CCGG	2 cut(s)	233, 668
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188III	TCNNGA	4 cut(s)	61, 81, 494, 775
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	5 cut(s)	49, 259, 530, 676, 752
HpyCH4V	TGCA	5 cut(s)	113, 325, 341, 864, 870
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 119, 122, 229, 415, 590, 668, 701
HpyF3I	CTNAG	3 cut(s)	410, 731, 788
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	5 cut(s)	19, 185, 480, 512, 634
HspAI	GCGC	2 cut(s)	660, 756
KasI	GGCGCC	1 cut(s)	659
Kzo9I	GATC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	45, 83
Lsp1109I	GCAGC	5 cut(s)	106, 109, 125, 128, 704
LweI	GCATC	2 cut(s)	27, 289
MaeI	CTAG	4 cut(s)	33, 98, 224, 812
MaeIII	GTNAC	3 cut(s)	8, 362, 458
MalI	GATC	1 cut(s)	641
MboI	GATC	1 cut(s)	639
MboII	GAAGA	7 cut(s)	82, 85, 173, 253, 509, 566, 569
MflI	RGATCY	1 cut(s)	639
MhlI	GDGCHC	2 cut(s)	23, 350
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	4 cut(s)	88, 277, 356, 794
MluNI	TGGCCA	1 cut(s)	725
Mly113I	GGCGCC	1 cut(s)	660
MnlI	CCTC	6 cut(s)	33, 231, 388, 549, 675, 682
Mox20I	TGGCCA	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	6 cut(s)	207, 438, 636, 680, 764, 876
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	2 cut(s)	233, 668
MspR9I	CCNGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	8 cut(s)	113, 119, 122, 229, 415, 590, 668, 701
NarI	GGCGCC	1 cut(s)	660
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	639
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	19, 185, 480, 512, 634
NlaIV	GGNNCC	2 cut(s)	661, 821
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	512
PciI	ACATGT	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	715, 784
PkrI	GCNGC	5 cut(s)	115, 118, 121, 124, 694
PluTI	GGCGCC	1 cut(s)	663
PscI	ACATGT	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	661, 821
PstNI	CAGNNNCTG	2 cut(s)	119, 122
PsuI	RGATCY	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	119
SaqAI	TTAA	6 cut(s)	207, 438, 636, 680, 764, 876
SatI	GCNGC	5 cut(s)	114, 117, 120, 123, 693
Sau3AI	GATC	1 cut(s)	639
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	23, 350
SetI	ASST	9 cut(s)	88, 121, 225, 316, 411, 522, 700, 732, 774
SfaNI	GCATC	2 cut(s)	27, 289
SfoI	GGCGCC	1 cut(s)	661
SmlI	CTYRAG	3 cut(s)	61, 648, 875
SmoI	CTYRAG	3 cut(s)	61, 648, 875
Sse9I	AATT	4 cut(s)	88, 277, 356, 794
SsiI	CCGC	1 cut(s)	835
SspDI	GGCGCC	1 cut(s)	659
SspMI	CTAG	4 cut(s)	33, 98, 224, 812
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	5 cut(s)	49, 259, 530, 676, 752
TasI	AATT	4 cut(s)	88, 277, 356, 794
TfiI	GAWTC	2 cut(s)	715, 784
Tru1I	TTAA	6 cut(s)	207, 438, 636, 680, 764, 876
Tru9I	TTAA	6 cut(s)	207, 438, 636, 680, 764, 876
TscAI	CASTG	3 cut(s)	301, 332, 357
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	5 cut(s)	113, 116, 119, 122, 692
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	348, 534, 567
TspGWI	ACGGA	3 cut(s)	260, 298, 794
TspRI	CASTG	3 cut(s)	301, 332, 357
Vha464I	CTTAAG	1 cut(s)	875
XapI	RAATTY	2 cut(s)	277, 356
XceI	RCATGY	1 cut(s)	512
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	4 cut(s)	33, 98, 224, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.