Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Reverse (-)

37332132 .. 37363567

Gene Structure 31436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGATCCTGGAAATCAGGGCAGGCTGTACCGTGATACTTCCAAGGAAACTCCATTCTCAACTCTTGCTTGCACAAGAACTAGATATGAAAGAGTGGGACGCTCCCGTATCAAATAACACCCTAGCAAAGAAATCAAATAAGGATAAGAGCTTACTGCATAGCGGAAGTCATATACTGGCAAAGCCAACAAAATTTGCTTCCTACCCTGGCGCCAATCGAGGCAAAACCACATCTGAGACCTCCCAAAGTCTTCGGAATACGTCCACGATCGATGTGACCAAACCACAATTGATCGAAGTTTCACGTGAATCGATCCAAACAACCACCAAGGATCGATCGGCGAGGCTCGGTATTATTGGTGTCACTCAACGTCATCGTGTTGTAGTCCCTGTAACTGCTAAGCGAGTCGCATATGAGCTTGGTCTGCATTTAGGTAAGGAGGTTGGCTTTCAAGTTAGGTTGGACAAAAAAATTGGTGACAATCCCTCCATCAAGTTCATGACATATGCAATATTACTATGCGAGATTTCTAAACCCCTATTTTTGCAAACTGATTTTTTGTTGAAGCGATATTCTATAATAATTATTGATGAAGCTCATGAGCGGAGCTTAAGCACGAACATACTTATTAGAATGCTTTCTCGTGTAATTAGTACTCGCCAGCAAATGGCAGTGCTTTCAGGAAAAACTATAGAACTTGGAAAACAAGTTTTTCCATTAAAGCTTGTGTTGACACTAGTACAAAAAACACTTTTAATGACATTTGAAAAAGTGGAATACTTCATTTATGGTAGAAAGTTGTTTCGTAATGTCCCGCCAGTTATAGAATTTCCCACCAGTCAATTTTCAATAACCACTCATCCGTTATGTAGGGGCATGCTTGTCTTTGTCACTGGGCAGAAGGAAGTAGAGTCCCTGTGTCGAAAACTACGTAGAGTTTCAACAGAACTAGTTGTGGAAACATCTAGAGACAAAATTGGGTGTAGTGCCACTGATGCTTCTAAAAAAGATGTTGAACTACTAGATATGAATGAGATTAATGAAGCATTTGAGTTTAGCTCTGTTGATGAAGATCCAGGTAATATATATGTGGATGAATTAGATGCCTCGTATGATTCAGACACAGACAGTGAAGTGGAAGTTATTGATGTTTTAGGAGAGACAGGGAGCATTGCTTCACTAAAAGCTAGTTTTGAAGCTTTGGTCGATAAAATTGAACTGAACTCTAGTTTTGATGGGAAACAGTCCATTTTAGTTACTGTAGATGCTTGTTGTAATAAATCTCATCCTAGTCTTGGGAAAAAGAGTGAGGTTAATATTGATAATTCCGTAGGTGGCTCACATGTGCTCCCTTTTTATGCCATGCTGCTTGCGGCTCCCCAGCTTCGCGTATTTGAAGAAGGCAAGGAAGGAGATCGATTAGTTGTTGTAGTTACAAATGTGGCTGAGACCTCTTTAACTATACCTAGGGTAAAGTATTTTGTTGATACTAGCAGTGTAAAAGTGAAAATCTACAATTACTCAAATGGTATGGAAACATATAACATAGAGTGGATAACCGGAAGAACGAAACCTGGGCACTGTTATTGTCTTTATTTTTCTACAGTATATAATAATGAATTTCCCGACTTTTCTTCAGCTAGAATATTGAAAGTCCCTATTGAGGGTGTTGTCCTTCTCATGAAATATATGAATATTGAAAACATTCCTCTCTATTTACATTTACATTTTTCAAAACGTTGCATGAATGCCTTTGAAGCACTTGACAGTAATGGCATATTAACACCTTTAAGGAAGGTCATAGCTCGTTACCACATGAGTCCTCGCCACTCCAGGATACTTCTTACGGTTATTCAAATCATGTACAAGGAGAAAAGTTATTCCCGCAGTAAATTAGTACTAGCATATGCACTTGCAGCAGCAACTGCTTTGAATTTATCAAATCCTTTTATGAGGCAGTTTGAAAATGACTCAAATAACTACGATTTGGATCAGGATGAAAATCTTAGCACTCCTATGAACAATAAGGTATTGGAGAAGCAAGAAAAGTTAAGAAGGAAGAAACTAAAAGAAAATCTAAAGATGTTTCGTGAAAAAATTTCTAATCCAATCAGTGATGCTCTGTCTATAGCTTATGCTTTGCAGTGCTACGAACTTTCTAGGAACCCACAACTGCTCCAACTTGTATTTAGTCAATGTGGTGTATTTGGCAGTGAGAAGGATTTTTCATTCATTTTTGGAAGTCTGGAAGACGTTGAACATGTTTGGAGGGCCTCCCATGATAAGTGTCCTCATTCATTGTATGAGGAAGAACTCTTAGGCCAAGCTATCTGTGCTGGTTGGGCAAATAGGATGGTGAAACGCATTAGAAGAACCTCAAGGTCATCTGAAGTAGATAGAAAAGTTCATGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

805

Amino Acids

91.05

Weight (kDa)

8.72

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	604
AccII	CGCG	1 cut(s)	1389
AciI	CCGC	5 cut(s)	162, 604, 815, 1373, 1885
AclI	AACGTT	1 cut(s)	1738
AclWI	GGATC	4 cut(s)	307, 339, 1067, 1998
AcsI	RAATTY	5 cut(s)	191, 827, 1619, 1933, 2097
AcuI	CTGAAG	2 cut(s)	1620, 2409
AcvI	CACGTG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	5 cut(s)	28, 655, 741, 1865, 1899
AfiI	CCNNNNNNNGG	4 cut(s)	667, 1295, 1663, 1664
AflII	CTTAAG	1 cut(s)	610
AflIII	ACRYGT	2 cut(s)	1342, 2260
AhlI	ACTAGT	2 cut(s)	736, 949
AjnI	CCWGG	5 cut(s)	6, 205, 1075, 1573, 1832
Alw21I	GWGCWC	1 cut(s)	1350
Alw26I	GTCTC	4 cut(s)	230, 963, 1154, 1442
AlwI	GGATC	4 cut(s)	307, 339, 1067, 1998
AlwNI	CAGNNNCTG	1 cut(s)	1925
AoxI	GGCC	2 cut(s)	2271, 2320
ApeKI	GCWGC	3 cut(s)	1366, 1916, 1919
ApoI	RAATTY	5 cut(s)	191, 827, 1619, 1933, 2097
AseI	ATTAAT	1 cut(s)	1038
Asp700I	GAANNNNTTC	2 cut(s)	637, 1704
AspA2I	CCTAGG	1 cut(s)	1466
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	2271
AsuHPI	GGTGA	2 cut(s)	488, 2368
AvrII	CCTAGG	1 cut(s)	1466
BaeGI	GKGCMC	1 cut(s)	1581
BanI	GGYRCC	1 cut(s)	209
BauI	CACGAG	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	305
BbsI	GAAGAC	2 cut(s)	242, 2256
Bbv12I	GWGCWC	1 cut(s)	1350
BbvI	GCAGC	3 cut(s)	1353, 1928, 1931
BccI	CCATC	3 cut(s)	497, 1229, 2347
BciT130I	CCWGG	5 cut(s)	8, 207, 1077, 1575, 1834
BciVI	GTATCC	1 cut(s)	1830
BcoDI	GTCTC	4 cut(s)	230, 963, 1154, 1442
BcuI	ACTAGT	2 cut(s)	736, 949
BfmI	CTRYAG	4 cut(s)	690, 1260, 1602, 2127
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	610
BfuI	GTATCC	1 cut(s)	1830
BisI	GCNGC	4 cut(s)	1367, 1374, 1917, 1920
BlnI	CCTAGG	1 cut(s)	1466
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	4 cut(s)	1368, 1375, 1918, 1921
BmcAI	AGTACT	2 cut(s)	655, 1899
Bme1390I	CCNGG	5 cut(s)	8, 207, 1077, 1575, 1834
BmgT120I	GGNCC	1 cut(s)	2271
BmiI	GGNNCC	3 cut(s)	211, 1377, 2165
BmrFI	CCNGG	5 cut(s)	8, 207, 1077, 1575, 1834
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	4 cut(s)	985, 1093, 1255, 2107
BmuI	ACTGGG	1 cut(s)	903
BpiI	GAAGAC	2 cut(s)	242, 2256
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
BpmI	CTGGAG	1 cut(s)	1816
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	2362
Bsa29I	ATCGAT	4 cut(s)	270, 311, 334, 1417
BsaAI	YACGTR	2 cut(s)	305, 932
BsaBI	GATNNNNATC	3 cut(s)	1071, 1989, 2001
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	230, 1442
BsaJI	CCNNGG	5 cut(s)	41, 205, 327, 1466, 1574
BsaWI	WCCGGW	1 cut(s)	1559
BsaXI	ACNNNNNCTCC	6 cut(s)	470, 500, 1332, 1362, 2160, 2190
Bsc4I	CCNNNNNNNGG	4 cut(s)	667, 1295, 1663, 1664
Bse1I	ACTGG	4 cut(s)	180, 818, 837, 898
Bse3DI	GCAATG	1 cut(s)	1170
Bse8I	GATNNNNATC	3 cut(s)	1071, 1989, 2001
BseBI	CCWGG	5 cut(s)	8, 207, 1077, 1575, 1834
BseCI	ATCGAT	4 cut(s)	270, 311, 334, 1417
BseDI	CCNNGG	5 cut(s)	41, 205, 327, 1466, 1574
BseGI	GGATG	5 cut(s)	859, 1099, 1285, 2002, 2358
BseJI	GATNNNNATC	3 cut(s)	1071, 1989, 2001
BseLI	CCNNNNNNNGG	4 cut(s)	667, 1295, 1663, 1664
BseMI	GCAATG	1 cut(s)	1170
BseMII	CTCAG	2 cut(s)	225, 1437
BseNI	ACTGG	4 cut(s)	180, 818, 837, 898
BseSI	GKGCMC	1 cut(s)	1581
BseXI	GCAGC	3 cut(s)	1353, 1928, 1931
BseYI	CCCAGC	1 cut(s)	1380
Bsh1236I	CGCG	1 cut(s)	1389
Bsh1285I	CGRYCG	2 cut(s)	270, 338
BshFI	GGCC	2 cut(s)	2273, 2322
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	4 cut(s)	270, 311, 334, 1417
BsiEI	CGRYCG	2 cut(s)	270, 338
BsiHKAI	GWGCWC	1 cut(s)	1350
BsiSI	CCGG	1 cut(s)	1560
BslFI	GGGAC	5 cut(s)	110, 371, 797, 898, 1640
BslI	CCNNNNNNNGG	4 cut(s)	667, 1295, 1663, 1664
BsmAI	GTCTC	4 cut(s)	230, 963, 1154, 1442
BsmFI	GGGAC	5 cut(s)	110, 371, 797, 898, 1640
BsmI	GAATGC	2 cut(s)	639, 1753
BsnI	GGCC	2 cut(s)	2273, 2322
Bso31I	GGTCTC	2 cut(s)	230, 1442
Bsp1286I	GDGCHC	2 cut(s)	1350, 1581
Bsp1407I	TGTACA	1 cut(s)	1863
Bsp143I	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	5 cut(s)	162, 604, 815, 1373, 1885
BspANI	GGCC	2 cut(s)	2273, 2322
BspCNI	CTCAG	2 cut(s)	226, 1438
BspDI	ATCGAT	4 cut(s)	270, 311, 334, 1417
BspFNI	CGCG	1 cut(s)	1389
BspHI	TCATGA	3 cut(s)	498, 598, 1680
BspLI	GGNNCC	3 cut(s)	211, 1377, 2165
BspPI	GGATC	4 cut(s)	307, 339, 1067, 1998
BspT107I	GGYRCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	610
BspTNI	GGTCTC	2 cut(s)	230, 1442
BsrBI	CCGCTC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	1170
BsrGI	TGTACA	1 cut(s)	1863
BsrI	ACTGG	4 cut(s)	180, 818, 837, 898
BssECI	CCNNGG	5 cut(s)	41, 205, 327, 1466, 1574
BssMI	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	3 cut(s)	41, 327, 1466
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	5 cut(s)	8, 207, 1077, 1575, 1834
Bst4CI	ACNGT	8 cut(s)	31, 1130, 1245, 1261, 1583, 1606, 1769, 1849
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	610
BstAPI	GCANNNNNTGC	1 cut(s)	1925
BstAUI	TGTACA	1 cut(s)	1863
BstBAI	YACGTR	2 cut(s)	305, 932
BstC8I	GCNNGC	5 cut(s)	22, 69, 662, 878, 1371
BstDEI	CTNAG	5 cut(s)	234, 399, 1446, 2006, 2317
BstF5I	GGATG	5 cut(s)	859, 1099, 1285, 2002, 2358
BstFNI	CGCG	1 cut(s)	1389
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	9 cut(s)	6, 270, 294, 315, 334, 338, 1075, 1417, 1993
BstMAI	GTCTC	4 cut(s)	230, 963, 1154, 1442
BstMBI	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
BstMCI	CGRYCG	2 cut(s)	270, 338
BstMWI	GCNNNNNNNGC	7 cut(s)	424, 995, 1757, 1916, 1925, 2333, 2342
BstNI	CCWGG	5 cut(s)	8, 207, 1077, 1575, 1834
BstNSI	RCATGY	3 cut(s)	880, 1346, 2264
BstSCI	CCNGG	5 cut(s)	6, 205, 1075, 1573, 1832
BstSFI	CTRYAG	4 cut(s)	690, 1260, 1602, 2127
BstSLI	GKGCMC	1 cut(s)	1581
BstSNI	TACGTA	1 cut(s)	932
BstUI	CGCG	1 cut(s)	1389
BstV1I	GCAGC	3 cut(s)	1353, 1928, 1931
BstV2I	GAAGAC	2 cut(s)	242, 2256
BstX2I	RGATCY	1 cut(s)	1072
BstYI	RGATCY	1 cut(s)	1072
Bsu15I	ATCGAT	4 cut(s)	270, 311, 334, 1417
BsuI	GTATCC	1 cut(s)	1830
BsuRI	GGCC	2 cut(s)	2273, 2322
BsuTUI	ATCGAT	4 cut(s)	270, 311, 334, 1417
BtsCI	GGATG	5 cut(s)	859, 1099, 1285, 2002, 2358
BtsI	GCAGTG	4 cut(s)	678, 1501, 2150, 2218
BtsIMutI	CAGTG	9 cut(s)	678, 891, 990, 1135, 1501, 1579, 2119, 2150, 2218
Cac8I	GCNNGC	5 cut(s)	22, 69, 662, 878, 1371
CaiI	CAGNNNCTG	1 cut(s)	1925
CciI	TCATGA	3 cut(s)	498, 598, 1680
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	2271
ClaI	ATCGAT	4 cut(s)	270, 311, 334, 1417
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	5 cut(s)	27, 654, 740, 1864, 1898
CviQI	GTAC	5 cut(s)	27, 654, 740, 1864, 1898
DdeI	CTNAG	5 cut(s)	234, 399, 1446, 2006, 2317
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	9 cut(s)	5, 269, 293, 314, 333, 337, 1074, 1416, 1992
DpnII	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
Eco105I	TACGTA	1 cut(s)	932
Eco130I	CCWWGG	3 cut(s)	41, 327, 1466
Eco31I	GGTCTC	2 cut(s)	230, 1442
Eco57I	CTGAAG	2 cut(s)	1620, 2409
Eco72I	CACGTG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	2271
EcoRII	CCWGG	5 cut(s)	6, 205, 1075, 1573, 1832
EcoT14I	CCWWGG	3 cut(s)	41, 327, 1466
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	41, 327, 1466
FaqI	GGGAC	5 cut(s)	110, 371, 797, 898, 1640
FauI	CCCGC	2 cut(s)	822, 1892
FauNDI	CATATG	3 cut(s)	412, 505, 1906
Fnu4HI	GCNGC	4 cut(s)	1367, 1374, 1917, 1920
FokI	GGATG	5 cut(s)	846, 1106, 1272, 2009, 2365
Fsp4HI	GCNGC	4 cut(s)	1367, 1374, 1917, 1920
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	1367, 1374, 1917, 1920
GsaI	CCCAGC	1 cut(s)	1384
GsuI	CTGGAG	1 cut(s)	1816
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	2273, 2322
HapII	CCGG	1 cut(s)	1560
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	2 cut(s)	722, 1197
HinfI	GANTC	6 cut(s)	308, 405, 911, 1115, 1819, 1970
HpaII	CCGG	1 cut(s)	1560
HphI	GGTGA	2 cut(s)	488, 2368
Hpy166II	GTNNAC	2 cut(s)	264, 732
Hpy188I	TCNGA	4 cut(s)	235, 255, 1120, 2389
Hpy188III	TCNNGA	9 cut(s)	499, 599, 681, 966, 1625, 1681, 1994, 2090, 2246
Hpy8I	GTNNAC	2 cut(s)	264, 732
HpyAV	CCTTC	7 cut(s)	895, 1394, 1403, 1685, 1789, 2049, 2212
HpyCH4III	ACNGT	8 cut(s)	31, 1130, 1245, 1261, 1583, 1606, 1769, 1849
HpyCH4IV	ACGT	6 cut(s)	260, 304, 370, 931, 1738, 2253
HpyF10VI	GCNNNNNNNGC	7 cut(s)	424, 995, 1757, 1916, 1925, 2333, 2342
HpyF3I	CTNAG	5 cut(s)	234, 399, 1446, 2006, 2317
HpySE526I	ACGT	6 cut(s)	260, 304, 370, 931, 1738, 2253
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
Kzo9I	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
LmnI	GCTCC	6 cut(s)	106, 606, 1167, 1353, 1381, 2181
Lsp1109I	GCAGC	3 cut(s)	1353, 1928, 1931
LweI	GCATC	4 cut(s)	985, 1093, 1255, 2107
MaeII	ACGT	6 cut(s)	260, 304, 370, 931, 1738, 2253
MaeIII	GTNAC	8 cut(s)	274, 361, 391, 476, 889, 1255, 1432, 1808
MalI	GATC	9 cut(s)	5, 269, 293, 314, 333, 337, 1074, 1416, 1992
MbiI	CCGCTC	1 cut(s)	604
MboI	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
MboII	GAAGA	9 cut(s)	242, 1082, 1409, 1575, 1626, 2071, 2261, 2321, 2382
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	1072
MhlI	GDGCHC	2 cut(s)	1350, 1581
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	4 cut(s)	414, 920, 1828, 1964
MmeI	TCCRAC	2 cut(s)	441, 2203
MroXI	GAANNNNTTC	2 cut(s)	637, 1704
MseI	TTAA	9 cut(s)	611, 719, 755, 1038, 1314, 1457, 1781, 1790, 2051
MslI	CAYNNNNRTG	1 cut(s)	2015
MspCI	CTTAAG	1 cut(s)	610
MspI	CCGG	1 cut(s)	1560
MspR9I	CCNGG	5 cut(s)	8, 207, 1077, 1575, 1834
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	2 cut(s)	639, 1753
MvaI	CCWGG	5 cut(s)	8, 207, 1077, 1575, 1834
MvnI	CGCG	1 cut(s)	1389
MwoI	GCNNNNNNNGC	7 cut(s)	424, 995, 1757, 1916, 1925, 2333, 2342
NarI	GGCGCC	1 cut(s)	210
NdeI	CATATG	3 cut(s)	412, 505, 1906
NdeII	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
NlaIV	GGNNCC	3 cut(s)	211, 1377, 2165
NmuCI	GTSAC	4 cut(s)	274, 361, 476, 889
NspI	RCATGY	3 cut(s)	880, 1346, 2264
PaeI	GCATGC	1 cut(s)	880
PagI	TCATGA	3 cut(s)	498, 598, 1680
PciI	ACATGT	2 cut(s)	1342, 2260
PcsI	WCGNNNNNNNCGW	1 cut(s)	928
PctI	GAATGC	2 cut(s)	639, 1753
PdmI	GAANNNNTTC	2 cut(s)	637, 1704
PfeI	GAWTC	2 cut(s)	308, 1115
PflMI	CCANNNNNTGG	1 cut(s)	667
PfoI	TCCNGGA	2 cut(s)	6, 1832
PkrI	GCNGC	4 cut(s)	1368, 1375, 1918, 1921
Ple19I	CGATCG	2 cut(s)	270, 338
PleI	GAGTC	4 cut(s)	413, 919, 1827, 1964
PluTI	GGCGCC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
PpsI	GAGTC	4 cut(s)	413, 919, 1827, 1964
Ppu21I	YACGTR	2 cut(s)	305, 932
PscI	ACATGT	2 cut(s)	1342, 2260
PshBI	ATTAAT	1 cut(s)	1038
Psp1406I	AACGTT	1 cut(s)	1738
Psp6I	CCWGG	5 cut(s)	6, 205, 1075, 1573, 1832
PspCI	CACGTG	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	1380
PspGI	CCWGG	5 cut(s)	6, 205, 1075, 1573, 1832
PspN4I	GGNNCC	3 cut(s)	211, 1377, 2165
PspPI	GGNCC	1 cut(s)	2271
PstNI	CAGNNNCTG	1 cut(s)	1925
PsuI	RGATCY	1 cut(s)	1072
PvuI	CGATCG	2 cut(s)	270, 338
RsaI	GTAC	5 cut(s)	28, 655, 741, 1865, 1899
RsaNI	GTAC	5 cut(s)	27, 654, 740, 1864, 1898
RseI	CAYNNNNRTG	1 cut(s)	2015
SaqAI	TTAA	9 cut(s)	611, 719, 755, 1038, 1314, 1457, 1781, 1790, 2051
SatI	GCNGC	4 cut(s)	1367, 1374, 1917, 1920
Sau3AI	GATC	9 cut(s)	3, 267, 291, 312, 331, 335, 1072, 1414, 1990
Sau96I	GGNCC	1 cut(s)	2271
ScaI	AGTACT	2 cut(s)	655, 1899
SchI	GAGTC	4 cut(s)	414, 920, 1828, 1964
ScrFI	CCNGG	5 cut(s)	8, 207, 1077, 1575, 1834
SduI	GDGCHC	2 cut(s)	1350, 1581
SfaNI	GCATC	4 cut(s)	985, 1093, 1255, 2107
SfcI	CTRYAG	4 cut(s)	690, 1260, 1602, 2127
SfoI	GGCGCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	2015
SmlI	CTYRAG	2 cut(s)	610, 2377
SmoI	CTYRAG	2 cut(s)	610, 2377
SnaBI	TACGTA	1 cut(s)	932
SpeI	ACTAGT	2 cut(s)	736, 949
SphI	GCATGC	1 cut(s)	880
SsiI	CCGC	5 cut(s)	162, 604, 815, 1373, 1885
SspDI	GGCGCC	1 cut(s)	209
SspI	AATATT	4 cut(s)	513, 1318, 1647, 1696
StyD4I	CCNGG	5 cut(s)	6, 205, 1075, 1573, 1832
StyI	CCWWGG	3 cut(s)	41, 327, 1466
TaaI	ACNGT	8 cut(s)	31, 1130, 1245, 1261, 1583, 1606, 1769, 1849
TaiI	ACGT	6 cut(s)	263, 307, 373, 934, 1741, 2256
TaqI	TCGA	8 cut(s)	217, 270, 294, 311, 334, 922, 1206, 1417
TatI	WGTACW	4 cut(s)	653, 739, 1863, 1897
TauI	GCSGC	1 cut(s)	1376
TfiI	GAWTC	2 cut(s)	308, 1115
Tru1I	TTAA	9 cut(s)	611, 719, 755, 1038, 1314, 1457, 1781, 1790, 2051
Tru9I	TTAA	9 cut(s)	611, 719, 755, 1038, 1314, 1457, 1781, 1790, 2051
TscAI	CASTG	9 cut(s)	678, 898, 997, 1135, 1501, 1586, 2119, 2150, 2218
TseFI	GTSAC	4 cut(s)	274, 361, 476, 889
TseI	GCWGC	3 cut(s)	1366, 1916, 1919
Tsp45I	GTSAC	4 cut(s)	274, 361, 476, 889
TspGWI	ACGGA	2 cut(s)	852, 1318
TspRI	CASTG	9 cut(s)	678, 898, 997, 1135, 1501, 1586, 2119, 2150, 2218
Van91I	CCANNNNNTGG	1 cut(s)	667
Vha464I	CTTAAG	1 cut(s)	610
VspI	ATTAAT	1 cut(s)	1038
XapI	RAATTY	5 cut(s)	191, 827, 1619, 1933, 2097
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	3 cut(s)	880, 1346, 2264
XmaJI	CCTAGG	1 cut(s)	1466
XmnI	GAANNNNTTC	2 cut(s)	637, 1704
ZrmI	AGTACT	2 cut(s)	655, 1899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.