Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000966.1

Orthogroup ID

OG0000599

Physical Location & Seq

Genomic Coordinates Forward (+)

31716 .. 40186

Gene Structure 8471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000966.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4503 bp

atggatgcttgtagtgaaagtgaacctgagtcagaaagaactcaaccaaggcaggatcttgacaaaagtggtcaagtgcaaccgatggtaatacaaaaggaaatccaaaagaccacatctgtatatttgaactcctcgcaggggctagtctatagcagaggacatgctacaaatggtggtcctgctgctggctcactgtctaaaaatgttatttgcaacgtgtctttgccagaaaacatagcttctagtgtgaatgatggccatgaaagaacagaggcaatggatagagtaaaagggagcccaaaggtgacttcaagcaggacaggtggattttctgattttgctgctccaaggtctctgatcgctccaactatagtgcaagtatcaaggccggttgaagttgaaaacacaaggaaggatcttccaatagtaatgatggaacaggagataatggaggctgttaatgaccattccactgttattatatgtggaattcctaaactgtgggcactggctcgattgttttggcttttggagtttttgatttgtttcttgcacaactctggaggtggcgatagcaacgcaatcatcttgccaaataagagaaagaggaaaaggaagggtactactcaggagggtaagatacttggcacaagaaaaacaccgaagatgaccaaatcccaggaaaggaagttgcaaaagttggaggaggagaaggaaaaagcccttttgctatccaagagcattgatgccttggggaaatataagcttccggagggtgcatattctcttttgcaatcatcaaaagatattggccaggttgaatcaaaaaaggaaaaacgtaggaaggctgtactattctccaaagctggattagaagttccctataccaaccaaccattaaaaaagaaagatggtatggatgcttgtagtgaaagtgaacctgagtcagaaagaactcaaccaaggcaggatcttgacaaaagtggtcaagtgcaaccgatggtaatacaaaaggaaatccaaaagaccacatctgtatatttgaactcctcgcaggggctagtctatagcagaggacatgctacaaatggtggtcctgctgctggctcactgtctaaaaatgttatttgcaacgtgtctttgccagaaaacatagcttctagtgtgaatgatggccatgaaagaacagaggcaatggatagagtaaaagggagcccaaaggtgacttcaagcaggacaggtggattttctgattttgctgctccaaggtctctgatcgctccaactatagtgcaagtatcaaggccggttgaagttgaaaacacaaggaaggatcttccaatagtaatgatggaacaggagataatggaggctgttaatgaccattccactgttattatatgtggagaaacagggtgtggtaaaaccactcaggttcctcagtttctttttgaagctggctttggttcaagccaatcttgtcatcgaagcggtattattggtgtcactcaacctcgtcgtgttgcagtccttgcaactgctaagcgagttgcatatgagcttggtttgcatttaggtaaagaggttggctttcaagttaggtttgacaaaaaatttggcgacagttcctccatcaagttcatgacagatggaatattactacgcgagcttcagagtgattttttgttaaagcgatactctataatcattcttgatgaagctcatgagcggagcttgagcacggacatacttattggaatgctttctcgtgtaattagtactcgccaggaaatctatgctaagcagcaaagggctgtgctttcaggaaaaactatagatcctagacaacaagtttttccattaaagcttgtgctgatgagtgccaccttgcaagtggaagacttcatttctggtagaaagttgtttcgtgatgtcccgccagttatagaagttcccactagacaatttccagtaaccactcacttctcaaaaagaactgggacggactatgttggccaagcatataaaaaagtcttggcaattcacaaaaggctgccccgtgggggcatacttgtctttgtcactgggcagaaggaagtagagttcttgtgtcgaaaactacgtagagcttcaacagaactggtcatgaaaacatctggagggaaaattgggtgtaatgccactgatgcttctaaaaaagatgttgaactactagatatgaacgagattaatgaagcatttgaggttgaagaaaatttagccgaccatcaaattgacaggtttagctctgttgatgaagttcttggtaatatatacgaggatgaattggatgcttcgtatgattcagacacagacagtgaagtggaaattattgaggatgatggggatttattattacataatcccccagaaattgatggtgttggtgcagatgttttaggagagacggggagcattgcttcactgaaagctgcttttgaagctttggccggtaaaactgaactgtactctagttctgatgggaaacagccaatttcagttactgtagatgcttactttaataaatcccatcctagtcttgggaaaaagagtgaggttgatattgataattccccaggtggcttgcatgttctccctctttatgccatgctgcctgcggcttctcaacttcgtgtatttgaagaagtcaaggaaggagatcgactagttgttgtagccacaaatgtggctgagacttctttaaccatacctggggtaaagtatgtcgttgatactggcagagtaaaagtgaaaaactacaattcctcaaatggtatggaaacatataacataaattggataagtaaggcatcagctgctcaacgtaaaggaagagccggaagaacaggacctgggcactgttatcgtctttattcttctgcagtatataataatgaatttcccgacttttctccagctgaaatattgaaagtccctattgatggcgttgtccttctcatgaaatctatgaatattgaaaaggtatccaattttccatttccaactccacctgatgttgctgccttgggtgaagcagaacgttgcttgaatgcccttgaagcacttgacagcaatggcagattaacacctttagggaaggccatggctcgttaccccatgagtcctcgccactccaggatgctccttacggttattcaaatcatgtacaatgagaaaagttattcccgcagtaaattaattctagcatacgcagttgcagcagcagctgctttgagtttgtcaaatccttttgtgaggcagtttgaaaatgactcaaataaccatgacttggatcaggatgaaaatctcagcgctcctgcgaacaataaggtgttggagaagcaagaaaagttaagaaggaagaaactaaaagaaactgtaaaggtgtttcgtgaaaaattttctaatcctgtcagtgatgctttgtctgtagcttatgctttgcagtgctacgaactttctaggagcccactaaagttctgcaatgataatgccctacacccaaaaacgatggaggaaatgtccaagctgagaaagcaactgctccaacttgtatttagtcaatgtggtgtatctggcagtgagaaggatttttcatgcatttttggaagtttggaagatgttgaacatgtttggagggcttcccatgataagagtcctctttcactgtatgaggaagacctcttaggccaagctatctgtgctggttgggcagatagggtggcgaaacgtattagaggaacctcagggtcatctgaagtagatagaaaagttcatgcagtgcggtatcaagcttgcatggttgaagagactgtgttcctccaccgttggtcatctgtttctaatgctgccccagagtttttggtgtacactgagctaatacagacaagacgtccatacatgcatggcgttactagtgtaaaaccagaatggcttgtaaagtatgctccgtctttatgcactttctctgcagcctcatccgatgccaaacagtattatgagcctgtgactgaccaagtgttacatgatgtcattccagcctttggtcctcatttatggaagcttcccccacatagtttgcctattactaactatgtctctcgagtggcagtttttgcttatgctttgcttgaaggccaggttttgccatgcttgagacatgctcgtgagtttatgaaggcacctccagctagtattttacggccacaggcagaagggcaaagacgggctggaaatttgttagctaagttgaacataaaaaaaatagacagctgtgctatgttaagagagatctggaaggagaatcctagtgaattgcattcagaaatccaggattggtttaaggagagtttccgcaagaatttggcagctctatggtcagacatgcttagggaagttcttttagaaccgcaagaacggttttcaaagagagagatcagaagaattgaagttaaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1500

Amino Acids

166.64

Weight (kDa)

8.47

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33390 AT1G33390
fragaria_vesca	FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica	MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica	Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis	pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis	RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata	RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora	Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii	Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa	Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha	Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana	Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	3937
AccB1I	GGYRCC	1 cut(s)	4222
AccB7I	CCANNNNNTGG	2 cut(s)	3331, 4085
AccBSI	CCGCTC	1 cut(s)	1732
AccII	CGCG	1 cut(s)	1668
AccIII	TCCGGA	1 cut(s)	772
AciI	CCGC	8 cut(s)	1494, 1732, 1940, 2660, 3229, 3826, 4396, 4451
AclI	AACGTT	1 cut(s)	3082
AclWI	GGATC	6 cut(s)	63, 426, 981, 1344, 1835, 3342
AcoI	YGGCCR	6 cut(s)	259, 814, 1177, 2017, 2490, 4244
AcsI	RAATTY	7 cut(s)	492, 1616, 2257, 2939, 3440, 4276, 4402
AcuI	CTGAAG	2 cut(s)	1658, 3819
AcyI	GRCGYC	1 cut(s)	3934
AfaI	GTAC	6 cut(s)	625, 855, 1783, 2510, 3209, 3911
AfeI	AGCGCT	1 cut(s)	3355
AflIII	ACRYGT	3 cut(s)	219, 1137, 3670
AhdI	GACNNNNNGTC	1 cut(s)	3933
AhlI	ACTAGT	2 cut(s)	2707, 3956
AjnI	CCWGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
AjuI	GAANNNNNNNTTGG	6 cut(s)	295, 327, 1213, 1245, 1449, 1481
AleI	CACNNNNGTG	1 cut(s)	2726
AloI	GAACNNNNNNTCC	4 cut(s)	864, 896, 2090, 2122
Alw21I	GWGCWC	1 cut(s)	1745
Alw26I	GTCTC	7 cut(s)	360, 1278, 2441, 2729, 3845, 4144, 4192
AlwI	GGATC	6 cut(s)	63, 426, 981, 1344, 1835, 3342
AlwNI	CAGNNNCTG	3 cut(s)	2546, 2894, 3269
Ama87I	CYCGRG	1 cut(s)	4143
Aor13HI	TCCGGA	1 cut(s)	772
Aor51HI	AGCGCT	1 cut(s)	3355
ApoI	RAATTY	7 cut(s)	492, 1616, 2257, 2939, 3440, 4276, 4402
ArsI	GACNNNNNNTTYG	2 cut(s)	1601, 1633
AseI	ATTAAT	2 cut(s)	2232, 3239
Asp700I	GAANNNNTTC	1 cut(s)	1765
AspLEI	GCGC	1 cut(s)	3356
AspS9I	GGNCC	4 cut(s)	179, 1097, 2891, 4088
AsuHPI	GGTGA	3 cut(s)	319, 1237, 3083
AvaI	CYCGRG	1 cut(s)	4143
AvaII	GGWCC	4 cut(s)	179, 1097, 2891, 4088
AxyI	CCTNAGG	1 cut(s)	3787
BaeGI	GKGCMC	2 cut(s)	511, 2901
BalI	TGGCCA	4 cut(s)	261, 816, 1179, 2019
BanI	GGYRCC	1 cut(s)	4222
BanII	GRGCYC	3 cut(s)	302, 1220, 3512
BauI	CACGAG	2 cut(s)	1770, 4206
BbsI	GAAGAC	2 cut(s)	1908, 3726
Bbv12I	GWGCWC	1 cut(s)	1745
BceAI	ACGGC	1 cut(s)	4259
BcgI	CGANNNNNNTGC	2 cut(s)	2888, 2922
BciT130I	CCWGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
BciVI	GTATCC	1 cut(s)	3037
BcoDI	GTCTC	7 cut(s)	360, 1278, 2441, 2729, 3845, 4144, 4192
BcuI	ACTAGT	2 cut(s)	2707, 3956
BfmI	CTRYAG	9 cut(s)	151, 372, 1069, 1290, 1836, 2547, 2922, 3471, 4011
BfoI	RGCGCY	1 cut(s)	3357
BfuI	GTATCC	1 cut(s)	3037
BglII	AGATCT	1 cut(s)	4332
BlpI	GCTNAGC	2 cut(s)	1545, 1803
BmcAI	AGTACT	1 cut(s)	1783
Bme1390I	CCNGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
Bme18I	GGWCC	4 cut(s)	179, 1097, 2891, 4088
BmeRI	GACNNNNNGTC	1 cut(s)	3933
BmeT110I	CYCGRG	1 cut(s)	4143
BmgT120I	GGNCC	4 cut(s)	179, 1097, 2891, 4088
BmiI	GGNNCC	6 cut(s)	299, 1217, 1440, 3509, 3784, 4224
BmrFI	CCNGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
BmrI	ACTGGG	2 cut(s)	2010, 2097
BmsI	GCATC	9 cut(s)	739, 913, 2179, 2323, 2542, 2861, 3171, 3451, 4015
BmuI	ACTGGG	2 cut(s)	2010, 2097
BpiI	GAAGAC	2 cut(s)	1908, 3726
BplI	GAGNNNNNCTC	2 cut(s)	4189, 4221
BpmI	CTGGAG	5 cut(s)	585, 2181, 2940, 3160, 4212
Bpu10I	CCTNAGC	1 cut(s)	4430
Bpu1102I	GCTNAGC	2 cut(s)	1545, 1803
BpuEI	CTTGAG	2 cut(s)	1759, 4216
BsaAI	YACGTR	1 cut(s)	2126
BsaBI	GATNNNNATC	1 cut(s)	3345
BsaHI	GRCGYC	1 cut(s)	3934
BsaI	GGTCTC	2 cut(s)	360, 1278
BsaWI	WCCGGW	1 cut(s)	772
BsaXI	ACNNNNNCTCC	4 cut(s)	1616, 1646, 3548, 3578
Bse118I	RCCGGY	3 cut(s)	391, 1309, 2492
Bse1I	ACTGG	7 cut(s)	516, 1943, 1973, 2005, 2092, 2148, 2782
Bse21I	CCTNAGG	1 cut(s)	3787
Bse3DI	GCAATG	5 cut(s)	285, 1203, 2457, 3121, 3532
Bse8I	GATNNNNATC	1 cut(s)	3345
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
BseGI	GGATG	9 cut(s)	10, 928, 2329, 2338, 2386, 2572, 3186, 3346, 4019
BseJI	GATNNNNATC	1 cut(s)	3345
BseMI	GCAATG	5 cut(s)	285, 1203, 2457, 3121, 3532
BseNI	ACTGG	7 cut(s)	516, 1943, 1973, 2005, 2092, 2148, 2782
BseRI	GAGGAG	4 cut(s)	124, 722, 725, 1042
BseSI	GKGCMC	2 cut(s)	511, 2901
BsgI	GTGCAG	1 cut(s)	2451
Bsh1236I	CGCG	1 cut(s)	1668
BshNI	GGYRCC	1 cut(s)	4222
BsiHKAI	GWGCWC	1 cut(s)	1745
BsiHKCI	CYCGRG	1 cut(s)	4143
BsiSI	CCGG	5 cut(s)	392, 773, 1310, 2493, 2880
BslFI	GGGAC	3 cut(s)	1922, 2017, 2960
BsmAI	GTCTC	7 cut(s)	360, 1278, 2441, 2729, 3845, 4144, 4192
BsmBI	CGTCTC	1 cut(s)	2441
BsmFI	GGGAC	3 cut(s)	1922, 2017, 2960
BsmI	GAATGC	3 cut(s)	1767, 3097, 4360
Bso31I	GGTCTC	2 cut(s)	360, 1278
BsoBI	CYCGRG	1 cut(s)	4143
Bsp1286I	GDGCHC	6 cut(s)	302, 511, 1220, 1745, 2901, 3512
Bsp13I	TCCGGA	1 cut(s)	772
Bsp1407I	TGTACA	2 cut(s)	3207, 3909
Bsp1720I	GCTNAGC	2 cut(s)	1545, 1803
Bsp19I	CCATGG	1 cut(s)	3144
BspACI	CCGC	8 cut(s)	1494, 1732, 1940, 2660, 3229, 3826, 4396, 4451
BspEI	TCCGGA	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	1668
BspHI	TCATGA	4 cut(s)	1644, 1726, 2148, 3000
BspLI	GGNNCC	6 cut(s)	299, 1217, 1440, 3509, 3784, 4224
BspMAI	CTGCAG	2 cut(s)	2926, 4015
BspPI	GGATC	6 cut(s)	63, 426, 981, 1344, 1835, 3342
BspQI	GCTCTTC	1 cut(s)	2869
BspT107I	GGYRCC	1 cut(s)	4222
BspTNI	GGTCTC	2 cut(s)	360, 1278
BsrBI	CCGCTC	1 cut(s)	1732
BsrDI	GCAATG	5 cut(s)	285, 1203, 2457, 3121, 3532
BsrFI	RCCGGY	3 cut(s)	391, 1309, 2492
BsrGI	TGTACA	2 cut(s)	3207, 3909
BsrI	ACTGG	7 cut(s)	516, 1943, 1973, 2005, 2092, 2148, 2782
BssAI	RCCGGY	3 cut(s)	391, 1309, 2492
BssNI	GRCGYC	1 cut(s)	3934
BssSI	CACGAG	2 cut(s)	1770, 4206
BssT1I	CCWWGG	7 cut(s)	47, 350, 753, 965, 1268, 3066, 3144
Bst2BI	CACGAG	2 cut(s)	1770, 4206
Bst2UI	CCWGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
Bst6I	CTCTTC	2 cut(s)	2869, 3843
BstACI	GRCGYC	1 cut(s)	3934
BstAPI	GCANNNNNTGC	4 cut(s)	1535, 2858, 3269, 4157
BstAUI	TGTACA	2 cut(s)	3207, 3909
BstBAI	YACGTR	1 cut(s)	2126
BstC8I	GCNNGC	7 cut(s)	190, 1108, 1462, 1670, 2627, 2658, 3838
BstDSI	CCRYGG	2 cut(s)	2062, 3144
BstF5I	GGATG	9 cut(s)	10, 928, 2329, 2338, 2386, 2572, 3186, 3346, 4019
BstFNI	CGCG	1 cut(s)	1668
BstH2I	RGCGCY	1 cut(s)	3357
BstHHI	GCGC	1 cut(s)	3356
BstMAI	GTCTC	7 cut(s)	360, 1278, 2441, 2729, 3845, 4144, 4192
BstNI	CCWGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
BstNSI	RCATGY	7 cut(s)	167, 1085, 2633, 3674, 3946, 4205, 4429
BstSCI	CCNGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
BstSFI	CTRYAG	9 cut(s)	151, 372, 1069, 1290, 1836, 2547, 2922, 3471, 4011
BstSLI	GKGCMC	2 cut(s)	511, 2901
BstSNI	TACGTA	1 cut(s)	2126
BstUI	CGCG	1 cut(s)	1668
BstV2I	GAAGAC	2 cut(s)	1908, 3726
BstX2I	RGATCY	6 cut(s)	55, 418, 973, 1336, 1840, 4332
BstXI	CCANNNNNNTGG	1 cut(s)	2728
BstYI	RGATCY	6 cut(s)	55, 418, 973, 1336, 1840, 4332
Bsu36I	CCTNAGG	1 cut(s)	3787
BsuI	GTATCC	1 cut(s)	3037
BtgI	CCRYGG	2 cut(s)	2062, 3144
BtsCI	GGATG	9 cut(s)	10, 928, 2329, 2338, 2386, 2572, 3186, 3346, 4019
BtsI	GCAGTG	3 cut(s)	3494, 3628, 3828
Cac8I	GCNNGC	7 cut(s)	190, 1108, 1462, 1670, 2627, 2658, 3838
CaiI	CAGNNNCTG	3 cut(s)	2546, 2894, 3269
CciI	TCATGA	4 cut(s)	1644, 1726, 2148, 3000
CfoI	GCGC	1 cut(s)	3356
Cfr10I	RCCGGY	3 cut(s)	391, 1309, 2492
Cfr13I	GGNCC	4 cut(s)	179, 1097, 2891, 4088
Csp6I	GTAC	6 cut(s)	624, 854, 1782, 2509, 3208, 3910
CspCI	CAANNNNNGTGG	2 cut(s)	4101, 4136
CviQI	GTAC	6 cut(s)	624, 854, 1782, 2509, 3208, 3910
DriI	GACNNNNNGTC	1 cut(s)	3933
EaeI	YGGCCR	6 cut(s)	259, 814, 1177, 2017, 2490, 4244
Eam1104I	CTCTTC	2 cut(s)	2869, 3843
Eam1105I	GACNNNNNGTC	1 cut(s)	3933
EarI	CTCTTC	2 cut(s)	2869, 3843
Eco105I	TACGTA	1 cut(s)	2126
Eco130I	CCWWGG	7 cut(s)	47, 350, 753, 965, 1268, 3066, 3144
Eco24I	GRGCYC	3 cut(s)	302, 1220, 3512
Eco31I	GGTCTC	2 cut(s)	360, 1278
Eco47I	GGWCC	4 cut(s)	179, 1097, 2891, 4088
Eco47III	AGCGCT	1 cut(s)	3355
Eco57I	CTGAAG	2 cut(s)	1658, 3819
Eco81I	CCTNAGG	1 cut(s)	3787
Eco88I	CYCGRG	1 cut(s)	4143
EcoO109I	RGGNCCY	1 cut(s)	2891
EcoRI	GAATTC	1 cut(s)	492
EcoRII	CCWGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
EcoT14I	CCWWGG	7 cut(s)	47, 350, 753, 965, 1268, 3066, 3144
EcoT22I	ATGCAT	2 cut(s)	3644, 3948
EcoT38I	GRGCYC	3 cut(s)	302, 1220, 3512
ErhI	CCWWGG	7 cut(s)	47, 350, 753, 965, 1268, 3066, 3144
Esp3I	CGTCTC	1 cut(s)	2441
FalI	AAGNNNNNCTT	2 cut(s)	1465, 1497
FaqI	GGGAC	3 cut(s)	1922, 2017, 2960
FauI	CCCGC	2 cut(s)	1947, 3236
FauNDI	CATATG	1 cut(s)	1558
FokI	GGATG	9 cut(s)	17, 935, 2336, 2345, 2393, 2559, 3193, 3353, 4006
FriOI	GRGCYC	3 cut(s)	302, 1220, 3512
GlaI	GCGC	1 cut(s)	3355
GsuI	CTGGAG	5 cut(s)	585, 2181, 2940, 3160, 4212
HaeII	RGCGCY	1 cut(s)	3357
HapII	CCGG	5 cut(s)	392, 773, 1310, 2493, 2880
HhaI	GCGC	1 cut(s)	3356
Hin1I	GRCGYC	1 cut(s)	3934
Hin6I	GCGC	1 cut(s)	3354
HinP1I	GCGC	1 cut(s)	3354
HindIII	AAGCTT	5 cut(s)	767, 1868, 2484, 3834, 4103
HinfI	GANTC	8 cut(s)	29, 824, 947, 2345, 3163, 3314, 3697, 4345
HpaII	CCGG	5 cut(s)	392, 773, 1310, 2493, 2880
HphI	GGTGA	3 cut(s)	319, 1237, 3083
Hpy166II	GTNNAC	4 cut(s)	23, 941, 3910, 3912
Hpy8I	GTNNAC	4 cut(s)	23, 941, 3910, 3912
Hpy99I	CGWCG	1 cut(s)	1524
HpyCH4IV	ACGT	8 cut(s)	219, 841, 1137, 2125, 2866, 3082, 3772, 3934
HpySE526I	ACGT	8 cut(s)	219, 841, 1137, 2125, 2866, 3082, 3772, 3934
Hsp92I	GRCGYC	1 cut(s)	3934
HspAI	GCGC	1 cut(s)	3354
Kpn2I	TCCGGA	1 cut(s)	772
LguI	GCTCTTC	1 cut(s)	2869
LweI	GCATC	9 cut(s)	739, 913, 2179, 2323, 2542, 2861, 3171, 3451, 4015
MaeII	ACGT	8 cut(s)	219, 841, 1137, 2125, 2866, 3082, 3772, 3934
MbiI	CCGCTC	1 cut(s)	1732
MflI	RGATCY	6 cut(s)	55, 418, 973, 1336, 1840, 4332
MhlI	GDGCHC	6 cut(s)	302, 511, 1220, 1745, 2901, 3512
MlsI	TGGCCA	4 cut(s)	261, 816, 1179, 2019
MluNI	TGGCCA	4 cut(s)	261, 816, 1179, 2019
MlyI	GAGTC	5 cut(s)	38, 956, 3172, 3308, 3706
MmeI	TCCRAC	6 cut(s)	392, 684, 1310, 3068, 3357, 3613
Mox20I	TGGCCA	4 cut(s)	261, 816, 1179, 2019
Mph1103I	ATGCAT	2 cut(s)	3644, 3948
MroI	TCCGGA	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	1765
MscI	TGGCCA	4 cut(s)	261, 816, 1179, 2019
MslI	CAYNNNNRTG	2 cut(s)	2726, 4206
Msp20I	TGGCCA	4 cut(s)	261, 816, 1179, 2019
MspA1I	CMGCKG	4 cut(s)	2858, 2960, 3269, 4314
MspI	CCGG	5 cut(s)	392, 773, 1310, 2493, 2880
MspR9I	CCNGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
Mva1269I	GAATGC	3 cut(s)	1767, 3097, 4360
MvaI	CCWGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
MvnI	CGCG	1 cut(s)	1668
NcoI	CCATGG	1 cut(s)	3144
NdeI	CATATG	1 cut(s)	1558
NlaIV	GGNNCC	6 cut(s)	299, 1217, 1440, 3509, 3784, 4224
NmuCI	GTSAC	5 cut(s)	307, 1225, 1507, 2083, 4048
NsiI	ATGCAT	2 cut(s)	3644, 3948
NspI	RCATGY	7 cut(s)	167, 1085, 2633, 3674, 3946, 4205, 4429
OliI	CACNNNNGTG	1 cut(s)	2726
PaeR7I	CTCGAG	1 cut(s)	4143
PagI	TCATGA	4 cut(s)	1644, 1726, 2148, 3000
PciI	ACATGT	1 cut(s)	3670
PciSI	GCTCTTC	1 cut(s)	2869
PcsI	WCGNNNNNNNCGW	1 cut(s)	2122
PctI	GAATGC	3 cut(s)	1767, 3097, 4360
PdmI	GAANNNNTTC	1 cut(s)	1765
PfeI	GAWTC	3 cut(s)	824, 2345, 4345
PflMI	CCANNNNNTGG	2 cut(s)	3331, 4085
PfoI	TCCNGGA	2 cut(s)	3176, 4371
PleI	GAGTC	5 cut(s)	37, 955, 3171, 3308, 3705
PpsI	GAGTC	5 cut(s)	37, 955, 3171, 3308, 3705
Ppu21I	YACGTR	1 cut(s)	2126
PpuMI	RGGWCCY	1 cut(s)	2891
PscI	ACATGT	1 cut(s)	3670
PshBI	ATTAAT	2 cut(s)	2232, 3239
Psp1406I	AACGTT	1 cut(s)	3082
Psp5II	RGGWCCY	1 cut(s)	2891
Psp6I	CCWGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
PspGI	CCWGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
PspN4I	GGNNCC	6 cut(s)	299, 1217, 1440, 3509, 3784, 4224
PspPI	GGNCC	4 cut(s)	179, 1097, 2891, 4088
PspPPI	RGGWCCY	1 cut(s)	2891
PstI	CTGCAG	2 cut(s)	2926, 4015
PstNI	CAGNNNCTG	3 cut(s)	2546, 2894, 3269
PsuI	RGATCY	6 cut(s)	55, 418, 973, 1336, 1840, 4332
PvuII	CAGCTG	4 cut(s)	2858, 2960, 3269, 4314
RsaI	GTAC	6 cut(s)	625, 855, 1783, 2510, 3209, 3911
RsaNI	GTAC	6 cut(s)	624, 854, 1782, 2509, 3208, 3910
RseI	CAYNNNNRTG	2 cut(s)	2726, 4206
SapI	GCTCTTC	1 cut(s)	2869
Sau96I	GGNCC	4 cut(s)	179, 1097, 2891, 4088
ScaI	AGTACT	1 cut(s)	1783
SchI	GAGTC	5 cut(s)	38, 956, 3172, 3308, 3706
ScrFI	CCNGG	9 cut(s)	683, 818, 1790, 2619, 2754, 2895, 3178, 4181, 4373
SduI	GDGCHC	6 cut(s)	302, 511, 1220, 1745, 2901, 3512
SfaNI	GCATC	9 cut(s)	739, 913, 2179, 2323, 2542, 2861, 3171, 3451, 4015
SfcI	CTRYAG	9 cut(s)	151, 372, 1069, 1290, 1836, 2547, 2922, 3471, 4011
Sfr274I	CTCGAG	1 cut(s)	4143
SinI	GGWCC	4 cut(s)	179, 1097, 2891, 4088
SlaI	CTCGAG	1 cut(s)	4143
SmiMI	CAYNNNNRTG	2 cut(s)	2726, 4206
SmlI	CTYRAG	3 cut(s)	1738, 4143, 4195
SmoI	CTYRAG	3 cut(s)	1738, 4143, 4195
SnaBI	TACGTA	1 cut(s)	2126
SpeI	ACTAGT	2 cut(s)	2707, 3956
SsiI	CCGC	8 cut(s)	1494, 1732, 1940, 2660, 3229, 3826, 4396, 4451
SspI	AATATT	3 cut(s)	1659, 2967, 3016
StyD4I	CCNGG	9 cut(s)	681, 816, 1788, 2617, 2752, 2893, 3176, 4179, 4371
StyI	CCWWGG	7 cut(s)	47, 350, 753, 965, 1268, 3066, 3144
TaiI	ACGT	8 cut(s)	222, 844, 1140, 2128, 2869, 3085, 3775, 3937
TaqI	TCGA	5 cut(s)	517, 1489, 2116, 2704, 4144
TatI	WGTACW	5 cut(s)	853, 1781, 2508, 3207, 3909
TauI	GCSGC	1 cut(s)	2663
TfiI	GAWTC	3 cut(s)	824, 2345, 4345
TseFI	GTSAC	5 cut(s)	307, 1225, 1507, 2083, 4048
Tsp45I	GTSAC	5 cut(s)	307, 1225, 1507, 2083, 4048
TspGWI	ACGGA	3 cut(s)	1760, 2021, 3981
Van91I	CCANNNNNTGG	2 cut(s)	3331, 4085
VpaK11BI	GGWCC	4 cut(s)	179, 1097, 2891, 4088
VspI	ATTAAT	2 cut(s)	2232, 3239
XapI	RAATTY	7 cut(s)	492, 1616, 2257, 2939, 3440, 4276, 4402
XceI	RCATGY	7 cut(s)	167, 1085, 2633, 3674, 3946, 4205, 4429
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1894, 2579
XhoI	CTCGAG	1 cut(s)	4143
XmnI	GAANNNNTTC	1 cut(s)	1765
ZraI	GACGTC	1 cut(s)	3935
ZrmI	AGTACT	1 cut(s)	1783
Zsp2I	ATGCAT	2 cut(s)	3644, 3948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.