Rh2AG603700

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
83134987 .. 83138198
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG603700.1

Sequence Viewer

Length: 1266 bp
ATGAAAATTCGCGATCAGCGTATGGATTTCAGGAGGAAAAAGAGGAAGCGAACCAATGAGGATTGTGGAGAAGTCTGTACAAGAGGAGCATTGAAGACGAGAGCATTGCAGAAAAGGAAGCTGAAGAAGTTGCAGGAGGAGAAGGAAAGAGAGCTGCTGTCGAAAGGCGTTGAGGCCTTGGAGAAGTATAAGATTCCAGAGGGTGCACATGCTCTCCTTCAGTCATCGCGGAACATTGGCCAGGTTGAATGTAGAAAGGTTAAATGTGGCAAAGCTGGATTTGGAGTTCCCCGTACCGACCAAGCATTTAGAAGGGAAGATGACGACAGTGCTTGCTGTGAAAGTGAATCTGAGTTGGAAATAATTCAATCAAGGCAGGATCTTGACAGGAAGGATCAGGTGCAATCAACGATAGTAGAAAAACAAGTCGAGAAGAACACATCTATTTCTTTGCACTGCTCTCAGGGGCTAGTATGTGGTAGAAGACTTGACATGAATGCTGGATGTGCAGCTGTCTCACTATCTGAAAATGATATTAGTTACACGTATGACACGTCTCTACGGGAAAACACAAATATTTTGTGCACGTCAAGCATGAATGATGACAGTGAAAGCACAAACTCAATGGTGCATATTGGACAGGATAAGATAAAAGAGAGTCCAAAGCCAAATACGAGCTGGGAAAATGAATTACCAGATTTTCCTGCACTGAGTTTTCTGAAAGATTCAAAGAATAGGCGGCATATATCAAGACCTCGTGAAGTTGTAGATGCAAGGAATGATATTCCCATAGTAATGATGGAGCAACAGATAATGGAGGCTATCAACGAGCATTCCACTGTAATTATACGTGGAGAGACTGGATGTGGTAAAACAACCCAAGATCCTCAGTTTCTTTATGAAGTTGGCATCGGTTCAAGTGGGTGCCCTCTTGGAAGTGGTATTATTGGTGTTACTCAACCCCGCTGCATTGCAGTCACTGCGACTGCTAAGCGTGTGGCATATGAGCTTGGCCTACAATTGGGTGAGGAGGTTGGATTTCAATATAGATATGACAAAAAGATTGGTGAAAGTTGCTCTATCAAATTCATGACAGATGGAATATTACTACGAGAAATCCAGGGTGATTTTTATTTGAAGAGATACTCTGTCATAATTCTTGATGAGGTCCATGAGCGGAGCTTGTGCACAGAGACGCTCATCGGAATGCTTTCAGCTATAATTGGTGTTCGTCAGGTGAAGCTCAATACTGGTATAACTTGCTAG

Protein Analysis

421

Amino Acids

47.35

Weight (kDa)

7.81

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000599)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33390 AT1G33390
fragaria_vesca FvH4_3g40090 FvH4_3g40090 FvH4_3g40090 FvH4_6g48600
malus_domestica MD04G1241500.v1.1 MD05G1017800.v1.1
prunus_persica Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1 Prupe.1G193500_v2.0.a1
pyrus_communis pycom04g21310 pycom05g01000 pycom05g01050 pycom11g20470
rosa_chinensis RchiOBHm_Chr2g0168421 RchiOBHm_Chr2g0168431 RchiOBHm_Chr2g0168441 RchiOBHm_Chr2g0168451 RchiOBHm_Chr2g0168461 RchiOBHm_Chr4g0407811 RchiOBHm_Chr7g0220161 RchiOBHm_Chr7g0220171 RchiOBHm_Chr7g0220481
rosa_laevigata RLG00000002253 RLG00000008696 RLG00000021781
rosa_multiflora Rmu_co8232135.1_g000001 Rmu_sc0000966.1_g000007 Rmu_sc0003573.1_g000032 Rmu_sc0006361.1_g000012 Rmu_sc0006361.1_g000013 Rmu_sc0012607.1_g000001 Rmu_sc0016657.1_g000009
rosa_roxburghii Rroxscaffold_2G00083000 Rroxscaffold_2G00083010 Rroxscaffold_3G00239750 Rroxscaffold_5G00352370
rosa_rugosa Rorug02G0533800 Rorug02G0533800 Rorug04G0081400 Rorug07G0189900 Rorug07G0190000
rosa_samantha Rh2AG603500 Rh2AG603700 Rh2BG616600 Rh2BG616700 Rh2BG616800 Rh2CG584500 Rh2CG584600 Rh2CG584700 Rh2DG627100 Rh2DG627200 Rh4AG146500 Rh4BG144000 Rh4CG153000 Rh4DG140500 Rh7AG332900 Rh7BG324300 Rh7BG324400 Rh7BG324500 Rh7CG350400 Rh7DG329000
rosa_wichuraiana Rw0G022710 Rw2G050050 Rw4G011990 Rw7G028060 Rw7G028070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 924
AccBSI CCGCTC 1 cut(s) 1177
AccII CGCG 2 cut(s) 12, 229
AciI CCGC 4 cut(s) 229, 739, 964, 1177
AclWI GGATC 3 cut(s) 387, 402, 878
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 2 cut(s) 6, 1085
AcuI CTGAAG 2 cut(s) 143, 203
AfaI GTAC 2 cut(s) 79, 295
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflIII ACRYGT 2 cut(s) 543, 552
AgsI TTSAA 7 cut(s) 94, 248, 368, 729, 918, 1043, 1138
AjiI CACGTC 2 cut(s) 555, 588
AjnI CCWGG 2 cut(s) 240, 1119
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 9 cut(s) 121, 154, 275, 512, 678, 1009, 1182, 1217, 1243
AluI AGCT 9 cut(s) 121, 154, 275, 512, 678, 1009, 1182, 1217, 1243
Alw21I GWGCWC 3 cut(s) 208, 587, 1190
Alw26I GTCTC 4 cut(s) 520, 561, 851, 1187
Alw44I GTGCAC 3 cut(s) 204, 583, 1186
AlwI GGATC 3 cut(s) 387, 402, 878
AlwNI CAGNNNCTG 1 cut(s) 980
AoxI GGCC 3 cut(s) 174, 238, 1012
ApaLI GTGCAC 3 cut(s) 204, 583, 1186
ApeKI GCWGC 3 cut(s) 154, 509, 966
ApoI RAATTY 2 cut(s) 6, 1085
Asp700I GAANNNNTTC 2 cut(s) 363, 1210
AspS9I GGNCC 1 cut(s) 1168
AsuHPI GGTGA 4 cut(s) 1037, 1079, 1136, 1249
AvaII GGWCC 1 cut(s) 1168
BaeGI GKGCMC 4 cut(s) 208, 587, 929, 1190
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 924
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 101, 490
Bbv12I GWGCWC 3 cut(s) 208, 587, 1190
BbvI GCAGC 3 cut(s) 141, 521, 953
BccI CCATC 2 cut(s) 793, 1091
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 2 cut(s) 242, 1121
BcoDI GTCTC 4 cut(s) 520, 561, 851, 1187
BfaI CTAG 2 cut(s) 470, 1264
BisI GCNGC 4 cut(s) 155, 510, 740, 967
BlpI GCTNAGC 1 cut(s) 990
BlsI GCNGC 4 cut(s) 156, 511, 741, 968
Bme1390I CCNGG 2 cut(s) 242, 1121
Bme18I GGWCC 1 cut(s) 1168
BmgBI CACGTC 2 cut(s) 555, 588
BmgT120I GGNCC 1 cut(s) 1168
BmiI GGNNCC 1 cut(s) 926
BmrFI CCNGG 2 cut(s) 242, 1121
BmsI GCATC 2 cut(s) 760, 918
BpiI GAAGAC 2 cut(s) 101, 490
Bpu1102I GCTNAGC 1 cut(s) 990
BsaAI YACGTR 2 cut(s) 546, 851
BsaJI CCNNGG 2 cut(s) 177, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse1I ACTGG 2 cut(s) 865, 1255
Bse3DI GCAATG 2 cut(s) 104, 969
BseBI CCWGG 2 cut(s) 242, 1121
BseDI CCNNGG 2 cut(s) 177, 1120
BseGI GGATG 2 cut(s) 509, 869
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMI GCAATG 2 cut(s) 104, 969
BseMII CTCAG 4 cut(s) 342, 476, 701, 902
BseNI ACTGG 2 cut(s) 865, 1255
BseRI GAGGAG 3 cut(s) 99, 152, 1043
BseSI GKGCMC 4 cut(s) 208, 587, 929, 1190
BseXI GCAGC 3 cut(s) 141, 521, 953
BseYI CCCAGC 1 cut(s) 678
BsgI GTGCAG 2 cut(s) 528, 690
Bsh1236I CGCG 2 cut(s) 12, 229
BshFI GGCC 3 cut(s) 176, 240, 1014
BshNI GGYRCC 1 cut(s) 924
BsiHKAI GWGCWC 3 cut(s) 208, 587, 1190
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 4 cut(s) 520, 561, 851, 1187
BsmBI CGTCTC 2 cut(s) 561, 1187
BsmI GAATGC 3 cut(s) 502, 832, 1212
BsnI GGCC 3 cut(s) 176, 240, 1014
Bsp1286I GDGCHC 4 cut(s) 208, 587, 929, 1190
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 4 cut(s) 13, 379, 394, 883
Bsp1720I GCTNAGC 1 cut(s) 990
Bsp68I TCGCGA 1 cut(s) 12
BspACI CCGC 4 cut(s) 229, 739, 964, 1177
BspANI GGCC 3 cut(s) 176, 240, 1014
BspCNI CTCAG 4 cut(s) 343, 475, 702, 901
BspFNI CGCG 2 cut(s) 12, 229
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 1 cut(s) 926
BspPI GGATC 3 cut(s) 387, 402, 878
BspT107I GGYRCC 1 cut(s) 924
BsrBI CCGCTC 1 cut(s) 1177
BsrDI GCAATG 2 cut(s) 104, 969
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 2 cut(s) 865, 1255
BssECI CCNNGG 2 cut(s) 177, 1120
BssMI GATC 4 cut(s) 13, 379, 394, 883
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 242, 1121
Bst4CI ACNGT 3 cut(s) 329, 608, 841
Bst6I CTCTTC 1 cut(s) 1133
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 1 cut(s) 77
BstBAI YACGTR 2 cut(s) 546, 851
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 5 cut(s) 351, 462, 710, 888, 990
BstF5I GGATG 2 cut(s) 509, 869
BstFNI CGCG 2 cut(s) 12, 229
BstKTI GATC 4 cut(s) 16, 382, 397, 886
BstMAI GTCTC 4 cut(s) 520, 561, 851, 1187
BstMBI GATC 4 cut(s) 13, 379, 394, 883
BstMWI GCNNNNNNNGC 3 cut(s) 506, 591, 980
BstNI CCWGG 2 cut(s) 242, 1121
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 240, 1119
BstSLI GKGCMC 4 cut(s) 208, 587, 929, 1190
BstUI CGCG 2 cut(s) 12, 229
BstV1I GCAGC 3 cut(s) 141, 521, 953
BstV2I GAAGAC 2 cut(s) 101, 490
BstX2I RGATCY 2 cut(s) 379, 883
BstYI RGATCY 2 cut(s) 379, 883
BsuRI GGCC 3 cut(s) 176, 240, 1014
BtgZI GCGATG 1 cut(s) 210
BtrI CACGTC 2 cut(s) 555, 588
BtsCI GGATG 2 cut(s) 509, 869
BtsI GCAGTG 2 cut(s) 454, 978
BtsIMutI CAGTG 6 cut(s) 334, 454, 613, 707, 837, 978
BtuMI TCGCGA 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 1089
Cfr13I GGNCC 1 cut(s) 1168
CseI GACGC 1 cut(s) 1204
Csp6I GTAC 2 cut(s) 78, 294
CviAII CATG 5 cut(s) 209, 493, 595, 1090, 1172
CviQI GTAC 2 cut(s) 78, 294
DdeI CTNAG 5 cut(s) 351, 462, 710, 888, 990
DpnI GATC 4 cut(s) 15, 381, 396, 885
DpnII GATC 4 cut(s) 13, 379, 394, 883
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 1133
EarI CTCTTC 1 cut(s) 1133
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 2 cut(s) 143, 203
EcoRII CCWGG 2 cut(s) 240, 1119
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 2 cut(s) 561, 1187
FaeI CATG 5 cut(s) 212, 496, 598, 1093, 1175
FatI CATG 5 cut(s) 208, 492, 594, 1089, 1171
FauI CCCGC 1 cut(s) 971
FauNDI CATATG 1 cut(s) 1003
Fnu4HI GCNGC 4 cut(s) 155, 510, 740, 967
FokI GGATG 2 cut(s) 516, 876
Fsp4HI GCNGC 4 cut(s) 155, 510, 740, 967
FspBI CTAG 2 cut(s) 470, 1264
GluI GCNGC 4 cut(s) 155, 510, 740, 967
GsaI CCCAGC 1 cut(s) 682
HaeIII GGCC 3 cut(s) 176, 240, 1014
HgaI GACGC 1 cut(s) 1204
Hin1II CATG 5 cut(s) 212, 496, 598, 1093, 1175
HinfI GANTC 4 cut(s) 193, 347, 658, 725
HphI GGTGA 4 cut(s) 1037, 1079, 1136, 1249
Hpy166II GTNNAC 3 cut(s) 206, 585, 1188
Hpy188I TCNGA 4 cut(s) 352, 526, 720, 1205
Hpy188III TCNNGA 9 cut(s) 11, 31, 197, 383, 430, 750, 758, 1090, 1160
Hpy8I GTNNAC 3 cut(s) 206, 585, 1188
HpyAV CCTTC 4 cut(s) 136, 227, 306, 385
HpyCH4III ACNGT 3 cut(s) 329, 608, 841
HpyCH4IV ACGT 4 cut(s) 545, 554, 587, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 591, 980
HpyF3I CTNAG 5 cut(s) 351, 462, 710, 888, 990
HpySE526I ACGT 4 cut(s) 545, 554, 587, 850
Hsp92II CATG 5 cut(s) 212, 496, 598, 1093, 1175
Kzo9I GATC 4 cut(s) 13, 379, 394, 883
LmnI GCTCC 3 cut(s) 86, 802, 1179
Lsp1109I GCAGC 3 cut(s) 141, 521, 953
LweI GCATC 2 cut(s) 760, 918
MaeI CTAG 2 cut(s) 470, 1264
MaeII ACGT 4 cut(s) 545, 554, 587, 850
MaeIII GTNAC 3 cut(s) 539, 952, 976
MalI GATC 4 cut(s) 15, 381, 396, 885
MbiI CCGCTC 1 cut(s) 1177
MboI GATC 4 cut(s) 13, 379, 394, 883
MboII GAAGA 6 cut(s) 106, 136, 329, 445, 495, 1150
MfeI CAATTG 1 cut(s) 1019
MflI RGATCY 2 cut(s) 379, 883
MhlI GDGCHC 4 cut(s) 208, 587, 929, 1190
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 8 cut(s) 6, 363, 689, 843, 1019, 1085, 1155, 1221
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 2 cut(s) 336, 1015
Mox20I TGGCCA 1 cut(s) 240
MroXI GAANNNNTTC 2 cut(s) 363, 1210
MscI TGGCCA 1 cut(s) 240
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 794, 1205
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 512, 966
MspR9I CCNGG 2 cut(s) 242, 1121
MunI CAATTG 1 cut(s) 1019
Mva1269I GAATGC 3 cut(s) 502, 832, 1212
MvaI CCWGG 2 cut(s) 242, 1121
MvnI CGCG 2 cut(s) 12, 229
MwoI GCNNNNNNNGC 3 cut(s) 506, 591, 980
NdeI CATATG 1 cut(s) 1003
NdeII GATC 4 cut(s) 13, 379, 394, 883
NlaIII CATG 5 cut(s) 212, 496, 598, 1093, 1175
NlaIV GGNNCC 1 cut(s) 926
NmuCI GTSAC 1 cut(s) 976
NruI TCGCGA 1 cut(s) 12
NspI RCATGY 1 cut(s) 212
PagI TCATGA 1 cut(s) 1089
PceI AGGCCT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 16, 551
PctI GAATGC 3 cut(s) 502, 832, 1212
PdmI GAANNNNTTC 2 cut(s) 363, 1210
PfeI GAWTC 3 cut(s) 193, 347, 725
PkrI GCNGC 4 cut(s) 156, 511, 741, 968
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
Ppu21I YACGTR 2 cut(s) 546, 851
Psp6I CCWGG 2 cut(s) 240, 1119
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 2 cut(s) 240, 1119
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 2 cut(s) 379, 883
PvuII CAGCTG 1 cut(s) 512
RruI TCGCGA 1 cut(s) 12
RsaI GTAC 2 cut(s) 79, 295
RsaNI GTAC 2 cut(s) 78, 294
RseI CAYNNNNRTG 2 cut(s) 794, 1205
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 4 cut(s) 155, 510, 740, 967
Sau3AI GATC 4 cut(s) 13, 379, 394, 883
Sau96I GGNCC 1 cut(s) 1168
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 242, 1121
SduI GDGCHC 4 cut(s) 208, 587, 929, 1190
SfaNI GCATC 2 cut(s) 760, 918
SinI GGWCC 1 cut(s) 1168
SmiMI CAYNNNNRTG 2 cut(s) 794, 1205
Sse9I AATT 8 cut(s) 6, 363, 689, 843, 1019, 1085, 1155, 1221
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 4 cut(s) 229, 739, 964, 1177
SspI AATATT 2 cut(s) 577, 1104
SspMI CTAG 2 cut(s) 470, 1264
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 240, 1119
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 3 cut(s) 329, 608, 841
TaiI ACGT 4 cut(s) 548, 557, 590, 853
TaqI TCGA 2 cut(s) 161, 429
TasI AATT 8 cut(s) 6, 363, 689, 843, 1019, 1085, 1155, 1221
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 742
TfiI GAWTC 3 cut(s) 193, 347, 725
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 6 cut(s) 334, 461, 613, 714, 844, 985
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 3 cut(s) 154, 509, 966
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 6 cut(s) 17, 509, 611, 702, 915, 1078
TspRI CASTG 6 cut(s) 334, 461, 613, 714, 844, 985
VneI GTGCAC 3 cut(s) 204, 583, 1186
VpaK11BI GGWCC 1 cut(s) 1168
XapI RAATTY 2 cut(s) 6, 1085
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 2 cut(s) 675, 796
XmnI GAANNNNTTC 2 cut(s) 363, 1210
XspI CTAG 2 cut(s) 470, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.