AT1G60530
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22299797 .. 22301167
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60530.1

Sequence Viewer

Length: 906 bp
ATGGGAGGCAGTAAGATGTCCAATGACTATGAAATTGATGTCGAAGCTGGGATGTCTTCTCTTTCTATAGTCAACACACCCATTGAAGCACCAATTGTATCATCTTACAATGACCGGATCCGGCCATTGCTTGACACTGTCGACAGATTGAGAAACCTGAATGTGATGAGAGAAGGGATCCAGCTTCCCACCATTGTGGTGGTTGGAGACCAGTCTTCAGGGAAGTCGAGTGTTCTTGAGTCGTTGGCAGGAATCAATTTGCCTCGTGGACAAGGAATCTGCACTAGGGTTCCTCTAGTCATGAGGCTTCAGCGAAGCTCCAGCCCTGAACCAGAGATTTGGCTGGAATACAGTGACAAAGTTGTTCCCACAGATGAAGAACACGTCGCTGAAGCTATTTGTGCTGCAACAGATGTGATTGCTGGAACTGGTGAAGGAGTTTCAGACACTCCCCTGACCCTCAGTGTTAAGAAGAACAATGTCCCAGATCTTACGATGGTCGATCTTCCCGGTATAACTCGAGTTCCAGTGAATGGACAACCGGAGAATATTTACGAACAGATTTCTAGGATGATCATGAAGTACATCGAGCCTCAAGAATCAATAATCCTCAATGTTCTGTCAGCTACGGTCGACTTCACCACATGCGAATCCATTCGCATGTCAAGACAAGTTGACAAAACTGGTGAACGGACTCTGGCTGTTGTGACAAAGGCTGACATGGCTCCTGAAGGTCTCCTGCAGAAAGTAACTGCAGATGATGTGAGTATCGGACTAGGTTACATCTGTGTTAGAAACCGTATAGGAGAAGAGACATATGAAGAAGCTAGGGTGCAGGAAGATTTACTCTTCAGGACTCATCCACTGCTAAGTTTGATTGATGGTGACATTGTCGGCATCTTGTGA

Protein Analysis

301

Amino Acids

32.88

Weight (kDa)

4.57

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 65 - 239 4.2e-45 Dynamin family
Dynamin_M PF01031 247 - 300 8.6e-08 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AccI GTMKAC 2 cut(s) 141, 633
AclWI GGATC 4 cut(s) 112, 125, 172, 185
AcoI YGGCCR 1 cut(s) 122
AcuI CTGAAG 5 cut(s) 201, 293, 411, 750, 835
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 86
AjiI CACGTC 1 cut(s) 385
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 6 cut(s) 47, 184, 318, 395, 626, 827
AluI AGCT 6 cut(s) 47, 184, 318, 395, 626, 827
Alw26I GTCTC 3 cut(s) 201, 740, 806
AlwI GGATC 4 cut(s) 112, 125, 172, 185
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 654
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 4 cut(s) 443, 631, 698, 896
AvaI CYCGRG 1 cut(s) 519
BamHI GGATCC 2 cut(s) 117, 177
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 48, 207
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 490, 875
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 201, 740, 806
BfaI CTAG 5 cut(s) 285, 296, 567, 776, 828
BfmI CTRYAG 3 cut(s) 66, 740, 753
BglII AGATCT 1 cut(s) 487
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 510
BmeT110I CYCGRG 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 385
BmiI GGNNCC 4 cut(s) 119, 179, 291, 726
BmrFI CCNGG 1 cut(s) 510
BpiI GAAGAC 2 cut(s) 48, 207
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 257, 579
BpuMI CCSGG 1 cut(s) 510
BsaI GGTCTC 2 cut(s) 201, 740
BsaWI WCCGGW 2 cut(s) 114, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 4 cut(s) 211, 433, 527, 688
Bse3DI GCAATG 1 cut(s) 125
BseGI GGATG 3 cut(s) 57, 576, 859
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 4 cut(s) 211, 433, 527, 688
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 2 cut(s) 265, 854
Bsh1285I CGRYCG 1 cut(s) 633
BshFI GGCC 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 4 cut(s) 115, 121, 510, 542
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 3 cut(s) 201, 740, 806
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 2 cut(s) 201, 740
BsoBI CYCGRG 1 cut(s) 519
Bsp143I GATC 5 cut(s) 117, 177, 487, 502, 573
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 474
BspHI TCATGA 2 cut(s) 300, 576
BspLI GGNNCC 4 cut(s) 119, 179, 291, 726
BspMAI CTGCAG 2 cut(s) 744, 757
BspPI GGATC 4 cut(s) 112, 125, 172, 185
BspTNI GGTCTC 2 cut(s) 201, 740
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 4 cut(s) 211, 433, 527, 688
BssMI GATC 5 cut(s) 117, 177, 487, 502, 573
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 4 cut(s) 139, 353, 631, 800
Bst6I CTCTTC 2 cut(s) 804, 854
BstDEI CTNAG 2 cut(s) 461, 869
BstF5I GGATG 3 cut(s) 57, 576, 859
BstKTI GATC 5 cut(s) 120, 180, 490, 505, 576
BstMAI GTCTC 3 cut(s) 201, 740, 806
BstMBI GATC 5 cut(s) 117, 177, 487, 502, 573
BstMCI CGRYCG 1 cut(s) 633
BstMWI GCNNNNNNNGC 2 cut(s) 401, 722
BstNSI RCATGY 2 cut(s) 648, 664
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 3 cut(s) 66, 740, 753
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 48, 207
BstX2I RGATCY 3 cut(s) 117, 177, 487
BstXI CCANNNNNNTGG 3 cut(s) 196, 199, 339
BstYI RGATCY 3 cut(s) 117, 177, 487
BsuRI GGCC 1 cut(s) 124
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 3 cut(s) 57, 576, 859
BtsI GCAGTG 1 cut(s) 863
BtsIMutI CAGTG 5 cut(s) 135, 358, 469, 534, 863
CciI TCATGA 2 cut(s) 300, 576
Csp6I GTAC 1 cut(s) 583
CviAII CATG 5 cut(s) 301, 577, 645, 661, 721
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 2 cut(s) 461, 869
DpnI GATC 5 cut(s) 119, 179, 489, 504, 575
DpnII GATC 5 cut(s) 117, 177, 487, 502, 573
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 804, 854
EarI CTCTTC 2 cut(s) 804, 854
Eco31I GGTCTC 2 cut(s) 201, 740
Eco57I CTGAAG 5 cut(s) 201, 293, 411, 750, 835
Eco88I CYCGRG 1 cut(s) 519
FaeI CATG 5 cut(s) 304, 580, 648, 664, 724
FaqI GGGAC 1 cut(s) 467
FatI CATG 5 cut(s) 300, 576, 644, 660, 720
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 2 cut(s) 141, 633
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 3 cut(s) 64, 583, 846
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 5 cut(s) 285, 296, 567, 776, 828
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 1 cut(s) 124
HapII CCGG 4 cut(s) 115, 121, 510, 542
Hin1II CATG 5 cut(s) 304, 580, 648, 664, 724
HincII GTYRAC 4 cut(s) 73, 142, 634, 676
HindII GTYRAC 4 cut(s) 73, 142, 634, 676
HinfI GANTC 7 cut(s) 239, 252, 276, 599, 650, 694, 856
HpaII CCGG 4 cut(s) 115, 121, 510, 542
HphI GGTGA 4 cut(s) 443, 631, 698, 896
Hpy166II GTNNAC 6 cut(s) 73, 142, 269, 634, 676, 689
Hpy188I TCNGA 2 cut(s) 445, 773
Hpy188III TCNNGA 7 cut(s) 236, 301, 577, 596, 666, 728, 853
Hpy8I GTNNAC 6 cut(s) 73, 142, 269, 634, 676, 689
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 3 cut(s) 167, 428, 725
HpyCH4III ACNGT 4 cut(s) 139, 353, 631, 800
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 5 cut(s) 282, 407, 742, 755, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 722
HpyF3I CTNAG 2 cut(s) 461, 869
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 5 cut(s) 304, 580, 648, 664, 724
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 5 cut(s) 117, 177, 487, 502, 573
LmnI GCTCC 2 cut(s) 323, 730
Lsp1109I GCAGC 1 cut(s) 391
MaeI CTAG 5 cut(s) 285, 296, 567, 776, 828
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 5 cut(s) 353, 706, 748, 779, 884
MalI GATC 5 cut(s) 119, 179, 489, 504, 575
MboI GATC 5 cut(s) 117, 177, 487, 502, 573
MboII GAAGA 9 cut(s) 48, 207, 389, 484, 497, 821, 833, 841, 851
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 3 cut(s) 117, 177, 487
MluCI AATT 3 cut(s) 33, 93, 256
MlyI GAGTC 3 cut(s) 248, 688, 850
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 6 cut(s) 273, 297, 303, 470, 603, 620
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 3 cut(s) 194, 197, 659
MspI CCGG 4 cut(s) 115, 121, 510, 542
MspR9I CCNGG 1 cut(s) 510
MunI CAATTG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 401, 722
NciI CCSGG 1 cut(s) 510
NdeI CATATG 1 cut(s) 817
NdeII GATC 5 cut(s) 117, 177, 487, 502, 573
NlaIII CATG 5 cut(s) 304, 580, 648, 664, 724
NlaIV GGNNCC 4 cut(s) 119, 179, 291, 726
NmuCI GTSAC 3 cut(s) 353, 706, 884
NspI RCATGY 2 cut(s) 648, 664
OliI CACNNNNGTG 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 519
PagI TCATGA 2 cut(s) 300, 576
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 4 cut(s) 252, 276, 599, 650
PflFI GACNNNGTC 2 cut(s) 137, 890
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 3 cut(s) 247, 688, 850
PpsI GAGTC 3 cut(s) 247, 688, 850
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 4 cut(s) 119, 179, 291, 726
PspXI VCTCGAGB 1 cut(s) 519
PstI CTGCAG 2 cut(s) 744, 757
PsuI RGATCY 3 cut(s) 117, 177, 487
PsyI GACNNNGTC 2 cut(s) 137, 890
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 3 cut(s) 194, 197, 659
SalI GTCGAC 2 cut(s) 140, 632
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 5 cut(s) 117, 177, 487, 502, 573
SchI GAGTC 3 cut(s) 248, 688, 850
ScrFI CCNGG 1 cut(s) 510
SfcI CTRYAG 3 cut(s) 66, 740, 753
Sfr274I CTCGAG 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 3 cut(s) 194, 197, 659
SmlI CTYRAG 3 cut(s) 236, 519, 594
SmoI CTYRAG 3 cut(s) 236, 519, 594
Sse9I AATT 3 cut(s) 33, 93, 256
SspI AATATT 1 cut(s) 550
SspMI CTAG 5 cut(s) 285, 296, 567, 776, 828
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 4 cut(s) 139, 353, 631, 800
TaiI ACGT 1 cut(s) 387
TaqI TCGA 7 cut(s) 42, 141, 227, 501, 520, 588, 633
TasI AATT 3 cut(s) 33, 93, 256
TatI WGTACW 1 cut(s) 582
TfiI GAWTC 4 cut(s) 252, 276, 599, 650
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 5 cut(s) 142, 358, 469, 534, 870
TseFI GTSAC 3 cut(s) 353, 706, 884
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 353, 706, 884
TspDTI ATGAA 4 cut(s) 45, 390, 593, 834
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 5 cut(s) 142, 358, 469, 534, 870
Tth111I GACNNNGTC 2 cut(s) 137, 890
Van91I CCANNNNNTGG 1 cut(s) 533
XceI RCATGY 2 cut(s) 648, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 519
XmiI GTMKAC 2 cut(s) 141, 633
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 5 cut(s) 285, 296, 567, 776, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.