Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

33863292 .. 33864134

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1282600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCTCAATCAGTACTCGGATGAACTTCTTAAGTGCAATGAAAGTGACCCAACAGTTAATTTCTTGACTGAGGAGATTAGGATTTTGGAGGAAGCTAAAGGTATCACTCTTCCTAATTTTCTTCCGCGCAACGCTTTTCTTTCCATTTTGCAGGGAAAAGTGAGAGGGATTTCAGATATACCCATCAGGTTTGTTGAGCAGGTGTGGAGTTATATTGAGGATGTGGTTCTTGCTGTGCTAATGCATAATACACAAGACTATTATCATCTCCATTTGGCCACCAGAAGAGCTGGCCATAATCTCATAGCAAAGATGAAAGAAAAGTCAATCAACTGGATCTTGGAGATTGTGGAAATGGAGAAACACACTGATTACACTTGTAATCCTGAATATGCAGCTGAATGTAGTAGGCTTATGACCAAGCAGAATGCCTTCCTAGACGGTTTGAACGACGAGAAACGTCCTTCCAAGATAGTTATAGGGGGTATTGGGGAGGTTGAAGTTGAAGGCCTGAGGAAGTATAAAAGTGTTGATCTATCTCAGGCTTACGACTTGAAAATCCGGATGACTGCCTATTGGAAGGTTGTTCTGAGAAGGCTGGTTGACAGTATGGCTTTGCATTTGCAGTTGAACGTTGCTAACCTTGTGAACAAGGACATGGAGATGGAGATTGTGGGAGAGCTAGTCGGACCTAATCACGGCTGTGGGATTGAAAAGATGCTGGAGGAATCTCCATCAACTGCAGTCAAGCGTGAGAAGCTCAACAAGAGCATCAAAAAGCTCAAGGATTCGAAAGAGGTGGTTGGTAAGATCATGGATGGCGTTATAACTTATGCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

281

Amino Acids

31.9

Weight (kDa)

6.21

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	9 - 137	3.8e-25	Dynamin central region
GED	PF02212	181 - 270	3.5e-11	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AarI	CACCTGC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	1 cut(s)	125
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	2 cut(s)	276, 292
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	6 cut(s)	448, 500, 506, 556, 631, 713
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	6 cut(s)	95, 290, 398, 682, 760, 781
AluI	AGCT	6 cut(s)	95, 290, 398, 682, 760, 781
AlwI	GGATC	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	3 cut(s)	276, 292, 508
ApeKI	GCWGC	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	689
AsuII	TTCGAA	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	512
BalI	TGGCCA	2 cut(s)	278, 294
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	4 cut(s)	191, 658, 742, 812
BceAI	ACGGC	1 cut(s)	715
BfaI	CTAG	2 cut(s)	437, 683
BfmI	CTRYAG	1 cut(s)	741
BfrI	CTTAAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmsI	GCATC	2 cut(s)	708, 780
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	767
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	338
Bse21I	CCTNAGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	561
BseGI	GGATG	4 cut(s)	25, 226, 570, 823
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	4 cut(s)	60, 503, 554, 581
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	278, 294, 510
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	278, 294, 510
Bsp119I	TTCGAA	1 cut(s)	791
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	336, 532, 810
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	3 cut(s)	278, 294, 510
BspCNI	CTCAG	4 cut(s)	61, 504, 553, 582
BspEI	TCCGGA	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	791
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	336, 532, 810
Bst4CI	ACNGT	3 cut(s)	55, 443, 608
Bst6I	CTCTTC	2 cut(s)	114, 280
BstAFI	CTTAAG	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	69, 512, 540, 590
BstF5I	GGATG	4 cut(s)	25, 226, 570, 823
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	339, 535, 813
BstMBI	GATC	3 cut(s)	336, 532, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	278, 294, 510
BtsCI	GGATG	4 cut(s)	25, 226, 570, 823
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	658, 814
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	4 cut(s)	69, 512, 540, 590
DpnI	GATC	3 cut(s)	338, 534, 812
DpnII	GATC	3 cut(s)	336, 532, 810
EaeI	YGGCCR	2 cut(s)	276, 292
Eam1104I	CTCTTC	2 cut(s)	114, 280
EarI	CTCTTC	2 cut(s)	114, 280
Eco147I	AGGCCT	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	2 cut(s)	661, 817
FatI	CATG	2 cut(s)	657, 813
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	4 cut(s)	32, 233, 577, 830
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	437, 683
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	3 cut(s)	278, 294, 510
HapII	CCGG	1 cut(s)	562
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	661, 817
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	728, 788
HpaII	CCGG	1 cut(s)	562
Hpy166II	GTNNAC	2 cut(s)	604, 649
Hpy188I	TCNGA	4 cut(s)	19, 175, 591, 689
Hpy188III	TCNNGA	3 cut(s)	64, 386, 562
Hpy8I	GTNNAC	2 cut(s)	604, 649
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	5 cut(s)	442, 474, 500, 574, 588
HpyCH4III	ACNGT	3 cut(s)	55, 443, 608
HpyCH4IV	ACGT	2 cut(s)	460, 633
HpyCH4V	TGCA	7 cut(s)	36, 151, 244, 395, 619, 625, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	757
HpyF3I	CTNAG	4 cut(s)	69, 512, 540, 590
HpySE526I	ACGT	2 cut(s)	460, 633
Hsp92II	CATG	2 cut(s)	661, 817
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	336, 532, 810
LguI	GCTCTTC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	708, 780
MaeI	CTAG	2 cut(s)	437, 683
MaeII	ACGT	2 cut(s)	460, 633
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	338, 534, 812
MboI	GATC	3 cut(s)	336, 532, 810
MboII	GAAGA	3 cut(s)	101, 113, 297
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	2 cut(s)	278, 294
MluCI	AATT	2 cut(s)	58, 115
MluNI	TGGCCA	2 cut(s)	278, 294
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	8 cut(s)	64, 82, 158, 211, 487, 507, 718, 790
Mox20I	TGGCCA	2 cut(s)	278, 294
Mph1103I	ATGCAT	1 cut(s)	246
MroI	TCCGGA	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	431
MscI	TGGCCA	2 cut(s)	278, 294
MseI	TTAA	3 cut(s)	30, 57, 841
MslI	CAYNNNNRTG	2 cut(s)	662, 702
Msp20I	TGGCCA	2 cut(s)	278, 294
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	757
NdeII	GATC	3 cut(s)	336, 532, 810
NlaIII	CATG	2 cut(s)	661, 817
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	791
OliI	CACNNNNGTG	1 cut(s)	702
PaqCI	CACCTGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	728, 788
PkrI	GCNGC	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	827
Psp1406I	AACGTT	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	2 cut(s)	662, 702
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	30, 57, 841
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	336, 532, 810
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	708, 780
SfcI	CTRYAG	1 cut(s)	741
SfuI	TTCGAA	1 cut(s)	791
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	2 cut(s)	662, 702
SmlI	CTYRAG	2 cut(s)	29, 782
SmoI	CTYRAG	2 cut(s)	29, 782
Sse9I	AATT	2 cut(s)	58, 115
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	437, 683
StuI	AGGCCT	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	55, 443, 608
TaiI	ACGT	2 cut(s)	463, 636
TaqI	TCGA	1 cut(s)	791
TasI	AATT	2 cut(s)	58, 115
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	728, 788
Tru1I	TTAA	3 cut(s)	30, 57, 841
Tru9I	TTAA	3 cut(s)	30, 57, 841
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	36, 54, 329
TspRI	CASTG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	2 cut(s)	437, 683
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.