Rh1DG084100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
15465937 .. 15466656
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG084100.1

Sequence Viewer

Length: 720 bp
ATGTTTCGGATTTTGATTGTGTTATTCAAAATTCGGGGCGTGACACCTGTTGTATTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGTTAATGCATAATACAGAAAACTATTATCAGCTTCAGGTATGCACCAGAAGAGCTGGCCATAATCTTATAACAAGGATGAAAGAAAGGTCAGTTGAGTGGACGATGGAGATGGTGGAAATGGAGAAGCTGACTGATTATACAAGTAATCCAGAATATGTATCCGAATGGAGCAGGCTGATGGGTCAACAAGACGCGTTTGTACATGCGGTGTTATCTAAAAATGACTCTACGGTCTCTGTAGAGGGTATTGGGGAAGTTGAAGTTGGAGACCTTCGGCAGTATGTTTCTCTTTTTTTCTTGGACGTGAATAATCATGTTCTGTCTCAGTCTTTTGACTTGAAAATGAGGATGACTGCCTATTGGAAAGTTGTTCTGAGAAGGCTTGTTGATTGTATGGCTTTGCATTTGCAGTTGAGTGTTTCGAAACTTGTGAACAAGGACATGGAGATTGAGATTGTGAAAGAGTTGATGGGACCAAATTGTGGTGGTGGGATTGAGAAAATGCTGGAGGAATCTCCAGCAGTTTCCGTCAAGCGCGAGAAGCTGGTAAAGAGCATAAAAAAGCTTAGGGATTCCAAAGAGGTTGTTGCTAAGATCTGGGATGGCGTTGCTACCTAA

Protein Analysis

239

Amino Acids

27.59

Weight (kDa)

6.54

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 17 - 93 1.7e-11 Dynamin central region
GED PF02212 145 - 232 1.4e-09 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AasI GACNNNNNNGTC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 584
AccII CGCG 2 cut(s) 296, 639
AciI CCGC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 4 cut(s) 28, 83, 362, 442
AjiI CACGTC 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 5 cut(s) 133, 155, 229, 646, 667
AluI AGCT 5 cut(s) 133, 155, 229, 646, 667
Alw26I GTCTC 3 cut(s) 340, 363, 429
AoxI GGCC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 575
AsuII TTCGAA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 575
BalI TGGCCA 1 cut(s) 159
BccI CCATC 5 cut(s) 199, 205, 274, 565, 698
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 340, 363, 429
BfmI CTRYAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 271
BglII AGATCT 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 575
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 576
BpmI CTGGAG 2 cut(s) 603, 629
Bpu10I CCTNAGC 1 cut(s) 668
Bpu14I TTCGAA 1 cut(s) 524
BsaI GGTCTC 2 cut(s) 340, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 584
BseGI GGATG 3 cut(s) 183, 456, 709
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 440, 467
Bsh1236I CGCG 2 cut(s) 296, 639
BshFI GGCC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 3 cut(s) 340, 363, 429
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 2 cut(s) 340, 363
Bsp119I TTCGAA 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 1 cut(s) 696
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 439, 468
BspFNI CGCG 2 cut(s) 296, 639
BspLI GGNNCC 1 cut(s) 576
BspQI GCTCTTC 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 524
BspTNI GGTCTC 2 cut(s) 340, 363
BsrGI TGTACA 1 cut(s) 301
BssMI GATC 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 157, 275
BstDEI CTNAG 4 cut(s) 426, 476, 668, 693
BstF5I GGATG 3 cut(s) 183, 456, 709
BstFNI CGCG 2 cut(s) 296, 639
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 1 cut(s) 699
BstMAI GTCTC 3 cut(s) 340, 363, 429
BstMBI GATC 1 cut(s) 696
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 2 cut(s) 296, 639
BstX2I RGATCY 1 cut(s) 696
BstYI RGATCY 1 cut(s) 696
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 159
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 3 cut(s) 183, 456, 709
Cac8I GCNNGC 2 cut(s) 157, 275
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 302
CviAII CATG 3 cut(s) 305, 416, 544
CviJI RGCY 9 cut(s) 133, 155, 159, 229, 277, 484, 500, 646, 667
CviKI_1 RGCY 9 cut(s) 133, 155, 159, 229, 277, 484, 500, 646, 667
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 4 cut(s) 426, 476, 668, 693
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco31I GGTCTC 2 cut(s) 340, 363
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 111
FaeI CATG 3 cut(s) 308, 419, 547
FaqI GGGAC 1 cut(s) 588
FatI CATG 3 cut(s) 304, 415, 543
FokI GGATG 3 cut(s) 190, 463, 716
GlaI GCGC 1 cut(s) 638
GsuI CTGGAG 2 cut(s) 603, 629
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 639
Hin1II CATG 3 cut(s) 308, 419, 547
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 3 cut(s) 326, 614, 674
Hpy166II GTNNAC 3 cut(s) 201, 287, 535
Hpy188I TCNGA 3 cut(s) 9, 265, 477
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 3 cut(s) 201, 287, 535
HpyAV CCTTC 3 cut(s) 58, 383, 474
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 109, 144, 505, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 4 cut(s) 426, 476, 668, 693
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 308, 419, 547
HspAI GCGC 1 cut(s) 637
Kzo9I GATC 1 cut(s) 696
LguI GCTCTTC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 270
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 2 cut(s) 95, 162
MflI RGATCY 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 2 cut(s) 30, 580
MluI ACGCGT 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 4 cut(s) 337, 441, 604, 676
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 111
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 159
MvnI CGCG 2 cut(s) 296, 639
MwoI GCNNNNNNNGC 1 cut(s) 643
NdeII GATC 1 cut(s) 696
NlaIII CATG 3 cut(s) 308, 419, 547
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 1 cut(s) 308
NspV TTCGAA 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 614, 674
PflMI CCANNNNNTGG 1 cut(s) 584
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PsiI TTATAA 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 575
PsuI RGATCY 1 cut(s) 696
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 1 cut(s) 320
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 575
Sse9I AATT 2 cut(s) 30, 580
SsiI CCGC 1 cut(s) 308
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 524
TasI AATT 2 cut(s) 30, 580
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 2 cut(s) 614, 674
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.