Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

511561 .. 512483

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAACTGAATAAAATGCCGAAGAGTCTTTCATCTGTTGCCGAGGCCATGACGGCCTTTATGCAAATCATTGGCTTGGCTAAGGAATCGCTTAGGAAGATTCTTTTGAGAGGAGAATTTGAGGAGTGCGCGGAAGACAGTCACATGCACTGCACTGCTAGATTGGCTGAGATGCTCAACCTGTACTCTGGTGAACTTCACAGATGTGCTGAGACTGATGCAAAGAGCAACTTCTTGATGGAGGAGATCAAGATCTTGGAGGAGGCCAAAGGTATTTCACTTCCGAACTTTCTTCCGCGCAATGCTTTCCACATTATCTTGCAGGGAAAAGTGAATGGAATTTCAAGTATTCCGATTGCATTTGTGGAACAAGTGTGGAGCTACATTGAAGAGGCGGTTATTTCTGTCGTGATGCGTAATTCGGAGAACTATTATCAGCTGCAGCTGTCAGCAGGGCGTACTGGCCATAATGTAATGGCCAAGATGAAGGAAAGGTCAATCAAGTGGATGCTGGAGCTTGTAGAGATGGAAAAGCTGACAGATTATACATGCGATGCTGATTATGTTTCCGAATGGAACAAGTTGATGGCTAGTCAAAATGCATTCGTTCATGGAGTCTTAACTGACGAGAATAAACCTTCTATCATAGCTATAGAAGGCATCGGGGAAGTTGAAGTCGGTGTTCTGAGGAAGTATCCGCATGTTTTAGCTCAAGCTTATGACCTTAAAATGAGAATGACTGCCTGTTGGAAGGTTGTTTTGAGGAGGTTTGTGGACTTCATGGCATTGCACTTGCAGCTGTCCGTTTTTAACCTTGTGAACAAAGAGATGGAAGCTGAGATTGTGAATGAGTTGATGGGACCTTACGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

5.48

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	2 - 196	3.4e-33	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	131, 298, 869
AciI	CCGC	4 cut(s)	131, 296, 395, 698
AcoI	YGGCCR	2 cut(s)	463, 477
AcsI	RAATTY	2 cut(s)	116, 339
AfaI	GTAC	2 cut(s)	185, 460
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	3 cut(s)	345, 389, 674
AleI	CACNNNNGTG	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	5 cut(s)	45, 54, 264, 463, 477
ApeKI	GCWGC	3 cut(s)	439, 442, 796
ApoI	RAATTY	2 cut(s)	116, 339
AspLEI	GCGC	2 cut(s)	131, 300
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	860
BalI	TGGCCA	2 cut(s)	465, 479
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	426, 454, 808
BccI	CCATC	5 cut(s)	232, 520, 580, 823, 850
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	159, 591
BfmI	CTRYAG	2 cut(s)	440, 651
BfuI	GTATCC	1 cut(s)	705
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	440, 443, 797
BlsI	GCNGC	3 cut(s)	441, 444, 798
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	1 cut(s)	861
BmsI	GCATC	6 cut(s)	162, 208, 402, 498, 544, 669
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	2 cut(s)	81, 92
BpuEI	CTTGAG	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	307, 785
Bse8I	GATNNNNATC	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	513
BseJI	GATNNNNATC	1 cut(s)	251
BseMI	GCAATG	2 cut(s)	307, 785
BseMII	CTCAG	4 cut(s)	159, 201, 677, 828
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	5 cut(s)	126, 137, 257, 275, 778
BseXI	GCAGC	3 cut(s)	426, 454, 808
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	3 cut(s)	131, 298, 869
BshFI	GGCC	5 cut(s)	47, 56, 266, 465, 479
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	5 cut(s)	47, 56, 266, 465, 479
Bsp143I	GATC	2 cut(s)	246, 252
BspACI	CCGC	4 cut(s)	131, 296, 395, 698
BspANI	GGCC	5 cut(s)	47, 56, 266, 465, 479
BspCNI	CTCAG	4 cut(s)	160, 202, 678, 829
BspFNI	CGCG	3 cut(s)	131, 298, 869
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	307, 785
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	246, 252
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	2 cut(s)	17, 384
BstDEI	CTNAG	6 cut(s)	81, 92, 168, 210, 686, 837
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	3 cut(s)	131, 298, 869
BstHHI	GCGC	2 cut(s)	131, 300
BstKTI	GATC	2 cut(s)	249, 255
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	246, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 164, 796
BstNSI	RCATGY	3 cut(s)	148, 552, 704
BstSFI	CTRYAG	2 cut(s)	440, 651
BstUI	CGCG	3 cut(s)	131, 298, 869
BstV1I	GCAGC	3 cut(s)	426, 454, 808
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	705
BsuRI	GGCC	5 cut(s)	47, 56, 266, 465, 479
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	2 cut(s)	148, 153
BtsIMutI	CAGTG	2 cut(s)	148, 153
CfoI	GCGC	2 cut(s)	131, 300
Cfr13I	GGNCC	1 cut(s)	860
Csp6I	GTAC	2 cut(s)	184, 459
CviAII	CATG	6 cut(s)	49, 145, 549, 611, 701, 781
CviQI	GTAC	2 cut(s)	184, 459
DdeI	CTNAG	6 cut(s)	81, 92, 168, 210, 686, 837
DpnI	GATC	2 cut(s)	248, 254
DpnII	GATC	2 cut(s)	246, 252
EaeI	YGGCCR	2 cut(s)	463, 477
Eam1104I	CTCTTC	2 cut(s)	17, 384
EarI	CTCTTC	2 cut(s)	17, 384
Eco47I	GGWCC	1 cut(s)	860
EcoO109I	RGGNCCY	1 cut(s)	860
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	6 cut(s)	52, 148, 552, 614, 704, 784
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	6 cut(s)	48, 144, 548, 610, 700, 780
Fnu4HI	GCNGC	3 cut(s)	440, 443, 797
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	3 cut(s)	440, 443, 797
FspBI	CTAG	2 cut(s)	159, 591
GlaI	GCGC	2 cut(s)	130, 299
GluI	GCNGC	3 cut(s)	440, 443, 797
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	47, 56, 266, 465, 479
HhaI	GCGC	2 cut(s)	131, 300
Hin1II	CATG	6 cut(s)	52, 148, 552, 614, 704, 784
Hin6I	GCGC	2 cut(s)	129, 298
HinP1I	GCGC	2 cut(s)	129, 298
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	4 cut(s)	25, 86, 100, 615
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	194, 775, 820
Hpy188I	TCNGA	5 cut(s)	285, 354, 424, 571, 687
Hpy188III	TCNNGA	3 cut(s)	235, 250, 409
Hpy8I	GTNNAC	3 cut(s)	194, 775, 820
HpyAV	CCTTC	4 cut(s)	481, 648, 650, 745
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 164, 796
HpyF3I	CTNAG	6 cut(s)	81, 92, 168, 210, 686, 837
Hsp92II	CATG	6 cut(s)	52, 148, 552, 614, 704, 784
HspAI	GCGC	2 cut(s)	129, 298
Kzo9I	GATC	2 cut(s)	246, 252
LmnI	GCTCC	2 cut(s)	378, 514
LpnPI	CCDG	7 cut(s)	174, 194, 308, 438, 447, 497, 757
Lsp1109I	GCAGC	3 cut(s)	426, 454, 808
LweI	GCATC	6 cut(s)	162, 208, 402, 498, 544, 669
MaeI	CTAG	2 cut(s)	159, 591
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	248, 254
MboI	GATC	2 cut(s)	246, 252
MboII	GAAGA	5 cut(s)	34, 109, 146, 284, 401
MflI	RGATCY	1 cut(s)	252
MlsI	TGGCCA	2 cut(s)	465, 479
MluCI	AATT	3 cut(s)	116, 339, 418
MluI	ACGCGT	1 cut(s)	867
MluNI	TGGCCA	2 cut(s)	465, 479
MlyI	GAGTC	2 cut(s)	34, 624
MmeI	TCCRAC	1 cut(s)	728
Mox20I	TGGCCA	2 cut(s)	465, 479
Mph1103I	ATGCAT	1 cut(s)	604
MscI	TGGCCA	2 cut(s)	465, 479
MseI	TTAA	3 cut(s)	620, 726, 810
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	2 cut(s)	465, 479
MspA1I	CMGCKG	3 cut(s)	439, 445, 799
Mva1269I	GAATGC	1 cut(s)	602
MvnI	CGCG	3 cut(s)	131, 298, 869
MwoI	GCNNNNNNNGC	3 cut(s)	53, 164, 796
NdeII	GATC	2 cut(s)	246, 252
NlaIII	CATG	6 cut(s)	52, 148, 552, 614, 704, 784
NlaIV	GGNNCC	1 cut(s)	861
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	3 cut(s)	148, 552, 704
OliI	CACNNNNGTG	1 cut(s)	204
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	86, 100
PkrI	GCNGC	3 cut(s)	441, 444, 798
PleI	GAGTC	2 cut(s)	33, 623
PpsI	GAGTC	2 cut(s)	33, 623
PpuMI	RGGWCCY	1 cut(s)	860
Psp5II	RGGWCCY	1 cut(s)	860
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	1 cut(s)	860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	3 cut(s)	439, 445, 799
RsaI	GTAC	2 cut(s)	185, 460
RsaNI	GTAC	2 cut(s)	184, 459
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	620, 726, 810
SatI	GCNGC	3 cut(s)	440, 443, 797
Sau3AI	GATC	2 cut(s)	246, 252
Sau96I	GGNCC	1 cut(s)	860
SchI	GAGTC	2 cut(s)	34, 624
SfaNI	GCATC	6 cut(s)	162, 208, 402, 498, 544, 669
SfcI	CTRYAG	2 cut(s)	440, 651
SfiI	GGCCNNNNNGGCC	1 cut(s)	53
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	3 cut(s)	116, 339, 418
SsiI	CCGC	4 cut(s)	131, 296, 395, 698
SspMI	CTAG	2 cut(s)	159, 591
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	3 cut(s)	116, 339, 418
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	86, 100
Tru1I	TTAA	3 cut(s)	620, 726, 810
Tru9I	TTAA	3 cut(s)	620, 726, 810
TscAI	CASTG	2 cut(s)	155, 160
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	3 cut(s)	439, 442, 796
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	4 cut(s)	21, 500, 599, 769
TspGWI	ACGGA	1 cut(s)	793
TspRI	CASTG	2 cut(s)	155, 160
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	2 cut(s)	116, 339
XceI	RCATGY	3 cut(s)	148, 552, 704
XspI	CTAG	2 cut(s)	159, 591
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.