Rh4BG420900
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
56637018 .. 56637617
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG420900.1

Sequence Viewer

Length: 600 bp
ATGAAACACTCGGAAAATTACTACCAGCTTCAGTTGTCTGCCAGAAGAGCTGGTCATAATCTGATGGCTAAGATGAAGGATAGGTCCATTAGGTGGATGATGGAGATTGTTGAAATGGAGAAGCCTACTGACTATACATGTGATCCTGAATATGTTGCTGAATGGAATAAGTTGATGGCTCAGCAGGAAGCATTTATGAATGGGGTTCTGCATGATGAGAAACAGCCTTCTACTATAGCTATACAGGGTATTGGGGAGGTTGAGGTTGAAGTCCTTAGGCATTACCCTCATGTTCTTGCTCAGGCTTTTGACCTGAAGATGAGGATGACTGCTTATTGGAAAGTTGTGCTGAGGAGGTTCGTTGATTGTATGGCACTGCATTTGCAGTTGTCTGTTTCAAATCTGGTGAACAAAGAGATGGAAGTTGAGATTGTTAATGAGTTGATGGGGCCATATGGTGGTGGAATTGAGAGGATGCTTGAGGAGTCACGGGCTGTGGCTGTTAAACGTGAGAAGCTGAACAAGAGTATCAAGAAGCTGAGGGACTCTAAGGAGGTTGTGGCCAAGATTATGGACGGCATCATTAGCTATGGTGATTAA

Protein Analysis

199

Amino Acids

23.08

Weight (kDa)

6.61

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 3 - 59 1.1e-07 Dynamin central region
GED PF02212 101 - 189 3.3e-09 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 93, 458
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 561
AcuI CTGAAG 2 cut(s) 14, 335
AfiI CCNNNNNNNGG 2 cut(s) 93, 458
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 3 cut(s) 113, 269, 399
AluBI AGCT 6 cut(s) 28, 50, 239, 517, 538, 588
AluI AGCT 6 cut(s) 28, 50, 239, 517, 538, 588
AlwI GGATC 1 cut(s) 137
AoxI GGCC 2 cut(s) 449, 561
AspS9I GGNCC 2 cut(s) 84, 449
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 511, 544
BalI TGGCCA 1 cut(s) 563
BbvCI CCTCAGC 2 cut(s) 350, 539
BccI CCATC 5 cut(s) 58, 94, 169, 412, 439
BceAI ACGGC 1 cut(s) 592
BfmI CTRYAG 1 cut(s) 234
BlpI GCTNAGC 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 84, 449
BmiI GGNNCC 1 cut(s) 450
BmsI GCATC 2 cut(s) 465, 588
Bpu10I CCTNAGC 3 cut(s) 300, 350, 539
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 458
Bse21I CCTNAGG 1 cut(s) 275
BseGI GGATG 3 cut(s) 102, 330, 480
BseLI CCNNNNNNNGG 2 cut(s) 93, 458
BseMII CTCAG 4 cut(s) 194, 314, 341, 530
BseRI GAGGAG 2 cut(s) 367, 497
BshFI GGCC 2 cut(s) 451, 563
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 93, 458
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 2 cut(s) 451, 563
Bsp143I GATC 1 cut(s) 142
Bsp1720I GCTNAGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 451, 563
BspCNI CTCAG 4 cut(s) 193, 313, 342, 531
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 40
BssMI GATC 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 40
BstDEI CTNAG 7 cut(s) 69, 180, 275, 300, 350, 539, 549
BstF5I GGATG 3 cut(s) 102, 330, 480
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 47, 585
BstNSI RCATGY 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 275
BsuRI GGCC 2 cut(s) 451, 563
BtsCI GGATG 3 cut(s) 102, 330, 480
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 84, 449
CviAII CATG 3 cut(s) 138, 212, 290
DdeI CTNAG 7 cut(s) 69, 180, 275, 300, 350, 539, 549
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 14, 335
Eco81I CCTNAGG 1 cut(s) 275
FaeI CATG 3 cut(s) 141, 215, 293
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 137, 211, 289
FauNDI CATATG 1 cut(s) 454
FokI GGATG 3 cut(s) 109, 337, 487
HaeIII GGCC 2 cut(s) 451, 563
Hin1II CATG 3 cut(s) 141, 215, 293
HinfI GANTC 2 cut(s) 485, 545
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 13, 63
Hpy188III TCNNGA 2 cut(s) 146, 532
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 70, 237
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 3 cut(s) 211, 379, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 585
HpyF3I CTNAG 7 cut(s) 69, 180, 275, 300, 350, 539, 549
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 3 cut(s) 141, 215, 293
Kzo9I GATC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 36, 38, 55, 159, 170, 230, 287, 326, 389
LweI GCATC 2 cut(s) 465, 588
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 486
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 57, 328
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 2 cut(s) 16, 465
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 2 cut(s) 494, 539
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MseI TTAA 3 cut(s) 435, 504, 598
Msp20I TGGCCA 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 47, 585
NdeI CATATG 1 cut(s) 454
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 141, 215, 293
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 141
PciI ACATGT 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 40
PflMI CCANNNNNTGG 2 cut(s) 93, 458
PleI GAGTC 2 cut(s) 493, 539
PpsI GAGTC 2 cut(s) 493, 539
PscI ACATGT 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 84, 449
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 435, 504, 598
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 84, 449
SchI GAGTC 2 cut(s) 494, 539
SfaNI GCATC 2 cut(s) 465, 588
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 16, 465
TaiI ACGT 1 cut(s) 511
TasI AATT 2 cut(s) 16, 465
Tru1I TTAA 3 cut(s) 435, 504, 598
Tru9I TTAA 3 cut(s) 435, 504, 598
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 3 cut(s) 17, 89, 212
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 2 cut(s) 93, 458
VpaK11BI GGWCC 1 cut(s) 84
XceI RCATGY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.