MD14G1009200.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
933548 .. 934618
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1009200.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGCAAAAAATTTACCCGATATAGTGAAGAAGATCAATGACAGGCTGAATTTTTGCATTATGGAACTGAATAAAATGCCCAAGAGTCTTTCGTCTGTTGCTGAGGCCATGACGGCCTTTATGCAAATCATTGGCTTGGCTAAGGAATCGCTTAGGAAGATCCTTTTGAGAGGAGAATTTGAGGAGTACGCGGAAGACAACCGCATGCACTGCACTGCTAGATTGGTTGAGATGCTCAACCAGTACTCGGATGAACTTCACAGATGTCCTGAAAGTGATGCAAAGAGCAACTTCTTGATGGAGGAAATCAAGATCTTGGAGGAGAACAAAGGTATTTCACTTCCGAACTTTCTTCCGCGCAATGCTTTCCACATTATCTTGCAGAGAAAAGTGAATGGAATTTCAAGTATTCCGATTGCATTTGTGGAACGAGTGTGGATCTACATTGAAGAGGCGGTTATTTCTGTCTTGATGCGTAATTCGGAGAACTATTATCAGCTGCAGCTGTCAGCAAGGCGTGCCGGCCATAATCTAATGGCCAAGATGAAGGAAAGGTCAATCAAGTGGATGCTGGAGCTTGTAGAGATGGAAAAGGTGACAGATTATACATGCGATGCTGATTATGTTTCCGAATGGAACAAGTTGATGGCTAGTCAAAACGAATTCATTCAAGGAGTCTTAACTGATGGGAAGAAACCGTCTGTCATAGCTATAGAAGGCATCGGGGAAGTCGAAGTCGGTGTTCTGAGGAAGTACCCGCATGTTTTAGCTCAAGCTTATGACCTTAAAATGAGAATGATTGCCTATTGGAAGGTTGTTTTGAGGAGGCTTGTGGACTCCATGGCATTGCACTTGCAGCTGTCTGTTTTCAACCTTGTGAACAAAGAGATGGAAGCTGAGATTGTGAATGAGTTGATGGGACCATACGGTGGGGGAATTGAGAGGATGTTGGAGGAGTCCCCGGCAGTGGCAGTAAAGCGTGAGAAGCTTAACAAAAGCATAAGAAAACTGAGGGATTCTAAGGAGGTAGTTGCCAAGAATATGGACAGCATTGTCACTCATGGGGATTAA

Protein Analysis

357

Amino Acids

40.92

Weight (kDa)

6.7

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 2 - 216 5.7e-40 Dynamin central region
GED PF02212 258 - 346 3.6e-10 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1052
AccB7I CCANNNNNTGG 1 cut(s) 929
AccII CGCG 2 cut(s) 191, 358
AciI CCGC 5 cut(s) 191, 202, 356, 455, 758
AclWI GGATC 2 cut(s) 154, 446
AcoI YGGCCR 2 cut(s) 523, 537
AcsI RAATTY 5 cut(s) 10, 49, 176, 399, 662
AfaI GTAC 3 cut(s) 188, 245, 755
AfiI CCNNNNNNNGG 3 cut(s) 247, 929, 967
AgsI TTSAA 4 cut(s) 405, 449, 671, 871
AluBI AGCT 9 cut(s) 499, 505, 577, 710, 770, 776, 859, 896, 988
AluI AGCT 9 cut(s) 499, 505, 577, 710, 770, 776, 859, 896, 988
AlwI GGATC 2 cut(s) 154, 446
AoxI GGCC 4 cut(s) 105, 114, 523, 537
ApeKI GCWGC 3 cut(s) 499, 502, 856
ApoI RAATTY 5 cut(s) 10, 49, 176, 399, 662
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 1 cut(s) 607
AvaII GGWCC 1 cut(s) 920
BalI TGGCCA 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 486, 514, 868
BccI CCATC 6 cut(s) 292, 580, 640, 680, 883, 910
BceAI ACGGC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 962
BfaI CTAG 2 cut(s) 219, 651
BfmI CTRYAG 2 cut(s) 500, 711
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 312
BisI GCNGC 3 cut(s) 500, 503, 857
BlsI GCNGC 3 cut(s) 501, 504, 858
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 962
Bme18I GGWCC 1 cut(s) 920
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 1 cut(s) 921
BmrFI CCNGG 1 cut(s) 962
BmsI GCATC 6 cut(s) 222, 268, 462, 558, 604, 729
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 593
Bpu10I CCTNAGC 3 cut(s) 102, 141, 152
BpuEI CTTGAG 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 962
BsaJI CCNNGG 2 cut(s) 840, 960
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 929, 967
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 367, 845
BseDI CCNNGG 2 cut(s) 840, 960
BseGI GGATG 3 cut(s) 256, 573, 951
BseLI CCNNNNNNNGG 3 cut(s) 247, 929, 967
BseMI GCAATG 2 cut(s) 367, 845
BseMII CTCAG 4 cut(s) 93, 737, 888, 1001
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 5 cut(s) 186, 197, 335, 838, 968
BseXI GCAGC 3 cut(s) 486, 514, 868
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 2 cut(s) 191, 358
BshFI GGCC 4 cut(s) 107, 116, 525, 539
BsiSI CCGG 2 cut(s) 522, 962
BslFI GGGAC 2 cut(s) 933, 943
BslI CCNNNNNNNGG 3 cut(s) 247, 929, 967
BsmFI GGGAC 2 cut(s) 933, 943
BsnI GGCC 4 cut(s) 107, 116, 525, 539
Bsp143I GATC 4 cut(s) 33, 159, 312, 438
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 5 cut(s) 191, 202, 356, 455, 758
BspANI GGCC 4 cut(s) 107, 116, 525, 539
BspCNI CTCAG 4 cut(s) 94, 738, 889, 1002
BspFNI CGCG 2 cut(s) 191, 358
BspLI GGNNCC 1 cut(s) 921
BspMAI CTGCAG 1 cut(s) 504
BspPI GGATC 2 cut(s) 154, 446
BsrDI GCAATG 2 cut(s) 367, 845
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 2 cut(s) 840, 960
BssMI GATC 4 cut(s) 33, 159, 312, 438
BssT1I CCWWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 699, 929
Bst6I CTCTTC 1 cut(s) 444
BstAPI GCANNNNNTGC 2 cut(s) 210, 518
BstC8I GCNNGC 3 cut(s) 206, 519, 523
BstDEI CTNAG 7 cut(s) 102, 141, 152, 746, 897, 1010, 1020
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 3 cut(s) 256, 573, 951
BstFNI CGCG 2 cut(s) 191, 358
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 36, 162, 315, 441
BstMBI GATC 4 cut(s) 33, 159, 312, 438
BstMWI GCNNNNNNNGC 5 cut(s) 113, 210, 518, 856, 985
BstNSI RCATGY 3 cut(s) 208, 612, 764
BstSCI CCNGG 1 cut(s) 960
BstSFI CTRYAG 2 cut(s) 500, 711
BstUI CGCG 2 cut(s) 191, 358
BstV1I GCAGC 3 cut(s) 486, 514, 868
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 159, 312, 438
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 3 cut(s) 159, 312, 438
BsuRI GGCC 4 cut(s) 107, 116, 525, 539
BtgI CCRYGG 1 cut(s) 840
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 3 cut(s) 256, 573, 951
BtsI GCAGTG 3 cut(s) 208, 213, 972
BtsIMutI CAGTG 3 cut(s) 208, 213, 972
Cac8I GCNNGC 3 cut(s) 206, 519, 523
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 920
Csp6I GTAC 3 cut(s) 187, 244, 754
CviAII CATG 6 cut(s) 109, 205, 609, 761, 841, 1061
CviQI GTAC 3 cut(s) 187, 244, 754
DdeI CTNAG 7 cut(s) 102, 141, 152, 746, 897, 1010, 1020
DpnI GATC 4 cut(s) 35, 161, 314, 440
DpnII GATC 4 cut(s) 33, 159, 312, 438
DrdI GACNNNNNNGTC 1 cut(s) 1052
DseDI GACNNNNNNGTC 1 cut(s) 1052
EaeI YGGCCR 2 cut(s) 523, 537
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 662
EcoT14I CCWWGG 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 840
FaeI CATG 6 cut(s) 112, 208, 612, 764, 844, 1064
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 933, 943
FatI CATG 6 cut(s) 108, 204, 608, 760, 840, 1060
FauI CCCGC 1 cut(s) 765
Fnu4HI GCNGC 3 cut(s) 500, 503, 857
FokI GGATG 3 cut(s) 263, 580, 958
Fsp4HI GCNGC 3 cut(s) 500, 503, 857
FspBI CTAG 2 cut(s) 219, 651
GlaI GCGC 1 cut(s) 359
GluI GCNGC 3 cut(s) 500, 503, 857
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 4 cut(s) 107, 116, 525, 539
HapII CCGG 2 cut(s) 522, 962
HhaI GCGC 1 cut(s) 360
Hin1II CATG 6 cut(s) 112, 208, 612, 764, 844, 1064
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 774, 986
HinfI GANTC 6 cut(s) 85, 146, 675, 836, 956, 1016
HpaII CCGG 2 cut(s) 522, 962
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 2 cut(s) 835, 880
Hpy188I TCNGA 6 cut(s) 250, 345, 414, 484, 631, 747
Hpy188III TCNNGA 4 cut(s) 269, 295, 310, 469
Hpy8I GTNNAC 2 cut(s) 835, 880
HpyAV CCTTC 3 cut(s) 541, 710, 805
HpyCH4III ACNGT 2 cut(s) 699, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 210, 518, 856, 985
HpyF3I CTNAG 7 cut(s) 102, 141, 152, 746, 897, 1010, 1020
Hsp92II CATG 6 cut(s) 112, 208, 612, 764, 844, 1064
HspAI GCGC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 33, 159, 312, 438
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 6 cut(s) 28, 254, 282, 535, 557, 975
Lsp1109I GCAGC 3 cut(s) 486, 514, 868
LweI GCATC 6 cut(s) 222, 268, 462, 558, 604, 729
MaeI CTAG 2 cut(s) 219, 651
MaeIII GTNAC 2 cut(s) 595, 1054
MalI GATC 4 cut(s) 35, 161, 314, 440
MboI GATC 4 cut(s) 33, 159, 312, 438
MboII GAAGA 7 cut(s) 40, 43, 169, 206, 344, 461, 703
MflI RGATCY 3 cut(s) 159, 312, 438
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 7 cut(s) 10, 49, 176, 399, 478, 662, 936
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 4 cut(s) 94, 684, 830, 965
MmeI TCCRAC 1 cut(s) 930
Mox20I TGGCCA 1 cut(s) 539
MroNI GCCGGC 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 539
MseI TTAA 4 cut(s) 680, 786, 990, 1069
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 3 cut(s) 499, 505, 859
MspI CCGG 2 cut(s) 522, 962
MspR9I CCNGG 1 cut(s) 962
MvnI CGCG 2 cut(s) 191, 358
MwoI GCNNNNNNNGC 5 cut(s) 113, 210, 518, 856, 985
NaeI GCCGGC 1 cut(s) 523
NciI CCSGG 1 cut(s) 962
NcoI CCATGG 1 cut(s) 840
NdeII GATC 4 cut(s) 33, 159, 312, 438
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 6 cut(s) 112, 208, 612, 764, 844, 1064
NlaIV GGNNCC 1 cut(s) 921
NmuCI GTSAC 2 cut(s) 595, 1054
NspI RCATGY 3 cut(s) 208, 612, 764
PaeI GCATGC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 729
PdiI GCCGGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 146, 1016
PflMI CCANNNNNTGG 1 cut(s) 929
PkrI GCNGC 3 cut(s) 501, 504, 858
PleI GAGTC 4 cut(s) 93, 683, 830, 964
PpsI GAGTC 4 cut(s) 93, 683, 830, 964
PspN4I GGNNCC 1 cut(s) 921
PspPI GGNCC 1 cut(s) 920
PstI CTGCAG 1 cut(s) 504
PsuI RGATCY 3 cut(s) 159, 312, 438
PvuII CAGCTG 3 cut(s) 499, 505, 859
RsaI GTAC 3 cut(s) 188, 245, 755
RsaNI GTAC 3 cut(s) 187, 244, 754
SaqAI TTAA 4 cut(s) 680, 786, 990, 1069
SatI GCNGC 3 cut(s) 500, 503, 857
Sau3AI GATC 4 cut(s) 33, 159, 312, 438
Sau96I GGNCC 1 cut(s) 920
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 4 cut(s) 94, 684, 830, 965
ScrFI CCNGG 1 cut(s) 962
SfaNI GCATC 6 cut(s) 222, 268, 462, 558, 604, 729
SfcI CTRYAG 2 cut(s) 500, 711
SfiI GGCCNNNNNGGCC 1 cut(s) 113
SinI GGWCC 1 cut(s) 920
SmlI CTYRAG 1 cut(s) 771
SmoI CTYRAG 1 cut(s) 771
SphI GCATGC 1 cut(s) 208
Sse9I AATT 7 cut(s) 10, 49, 176, 399, 478, 662, 936
SsiI CCGC 5 cut(s) 191, 202, 356, 455, 758
SspMI CTAG 2 cut(s) 219, 651
StyD4I CCNGG 1 cut(s) 960
StyI CCWWGG 1 cut(s) 840
TaaI ACNGT 2 cut(s) 699, 929
TaqI TCGA 1 cut(s) 732
TasI AATT 7 cut(s) 10, 49, 176, 399, 478, 662, 936
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 146, 1016
Tru1I TTAA 4 cut(s) 680, 786, 990, 1069
Tru9I TTAA 4 cut(s) 680, 786, 990, 1069
TscAI CASTG 3 cut(s) 215, 220, 972
TseFI GTSAC 2 cut(s) 595, 1054
TseI GCWGC 3 cut(s) 499, 502, 856
Tsp45I GTSAC 2 cut(s) 595, 1054
TspDTI ATGAA 3 cut(s) 267, 560, 655
TspRI CASTG 3 cut(s) 215, 220, 972
Van91I CCANNNNNTGG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 5 cut(s) 10, 49, 176, 399, 662
XceI RCATGY 3 cut(s) 208, 612, 764
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 2 cut(s) 219, 651
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.