RchiOBHm_Chr2g0127741
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
42608980 .. 42609976
997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49959

Sequence Viewer

Length: 810 bp
ATGCCAAAGAAACTGTCATCTGTTAGTGAAGCCATGACCACGTTTATGCAGATCATCGGATCATCAAAAGAATCGCTTAGGAAAATTCTGGTGAGAGGAGAATTTGGTGAATTCCCTGATGACAAGCGCATGCATTGCACCGCTCGGCTTTTTGAGATGCTCAATCAGTACTCAGATCAACTTCAAAAGTGTGAAGAAAGTGACCCGAAAAAGAACTTCTTAGGAAAAGTGAAGGGAATTTCGAGCATACCTATTGGGTTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGTTAATGCATAATACAGAAAACTATTATCAGCTTCAAGTATGCACCAGAAGAGCTGGCCGTAATCTTATAACAAGGATGAAAGAAAGGTCAGTTCAGTGGATGATGGAGCTAGTGGAAATGGAGAACCTGACTGATTATACATGTAATCCAGAATATGGTATTGGGGAAGTTCAAGTTGGAGTCCTTCGGCAGTATCCTCAAGTTCTCTCTCAGGCTTTCGACTTGAAAATGAGGATGACTGCCTATTGGAAAGTTGTTCTGGGAAGGCTTGTTGATTGTATGGCTTTGCATTTGCAGTTCAGTGTTTCGAAACTTGTGAACCAAGAGATGGAGAGTGAGATTGTGAATGAGTTGATGGGACCAAATTGTGGTGGTGGGATTGAGAAAATGCTGGAGGAATCTCCAGCAGTTGCCATCAAGCGCGAGAAGCTGATTAAGAGCATAAAAAAGCTCAGGGATTCCAAAGAGGTTGTTGGTAAGATCTTGGATGGTGTTGCTACCTAA

Protein Analysis

269

Amino Acids

30.8

Weight (kDa)

8.12

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 76 - 155 5e-11 Dynamin central region
GED PF02212 172 - 262 1.9e-10 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB7I CCANNNNNTGG 3 cut(s) 461, 634, 674
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 1 cut(s) 729
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 4 cut(s) 84, 101, 110, 237
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 461, 634, 674
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 5 cut(s) 185, 287, 341, 479, 532
AjuI GAANNNNNNNTTGG 4 cut(s) 450, 465, 482, 497
AluBI AGCT 5 cut(s) 337, 359, 415, 736, 757
AluI AGCT 5 cut(s) 337, 359, 415, 736, 757
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 361
ApoI RAATTY 4 cut(s) 84, 101, 110, 237
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspLEI GCGC 2 cut(s) 129, 729
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 103, 119
AsuII TTCGAA 1 cut(s) 614
AvaII GGWCC 1 cut(s) 665
BccI CCATC 5 cut(s) 403, 628, 655, 728, 788
BceAI ACGGC 1 cut(s) 348
BciVI GTATCC 1 cut(s) 510
BfaI CTAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 510
BglII AGATCT 1 cut(s) 786
BmcAI AGTACT 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 666
BmsI GCATC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 693, 719
Bpu10I CCTNAGC 2 cut(s) 77, 758
Bpu14I TTCGAA 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 634, 674
Bse3DI GCAATG 1 cut(s) 133
BseGI GGATG 4 cut(s) 387, 411, 546, 799
BseLI CCNNNNNNNGG 3 cut(s) 461, 634, 674
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 186, 530, 772
BseRI GAGGAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 1 cut(s) 363
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 3 cut(s) 461, 634, 674
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 614
Bsp143I GATC 4 cut(s) 51, 59, 175, 786
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 3 cut(s) 185, 529, 771
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 1 cut(s) 666
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 349
BspT104I TTCGAA 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 133
BssMI GATC 4 cut(s) 51, 59, 175, 786
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 349
BstAPI GCANNNNNTGC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 131, 361
BstDEI CTNAG 5 cut(s) 77, 172, 220, 516, 758
BstF5I GGATG 4 cut(s) 387, 411, 546, 799
BstFNI CGCG 1 cut(s) 729
BstHHI GCGC 2 cut(s) 129, 729
BstKTI GATC 4 cut(s) 54, 62, 178, 789
BstMBI GATC 4 cut(s) 51, 59, 175, 786
BstMWI GCNNNNNNNGC 2 cut(s) 135, 733
BstNSI RCATGY 2 cut(s) 133, 450
BstUI CGCG 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 786
BstYI RGATCY 1 cut(s) 786
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 4 cut(s) 387, 411, 546, 799
BtsIMutI CAGTG 2 cut(s) 407, 613
Cac8I GCNNGC 2 cut(s) 131, 361
CfoI GCGC 2 cut(s) 129, 729
Cfr13I GGNCC 1 cut(s) 665
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 34, 130, 447
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 5 cut(s) 77, 172, 220, 516, 758
DpnI GATC 4 cut(s) 53, 61, 177, 788
DpnII GATC 4 cut(s) 51, 59, 175, 786
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 110
EcoT22I ATGCAT 2 cut(s) 135, 315
FaeI CATG 3 cut(s) 37, 133, 450
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 203, 235
FaqI GGGAC 1 cut(s) 678
FatI CATG 3 cut(s) 33, 129, 446
FokI GGATG 4 cut(s) 394, 418, 553, 806
FspBI CTAG 1 cut(s) 416
GlaI GCGC 2 cut(s) 128, 728
GsuI CTGGAG 2 cut(s) 693, 719
HaeIII GGCC 1 cut(s) 363
HhaI GCGC 2 cut(s) 129, 729
Hin1II CATG 3 cut(s) 37, 133, 450
Hin6I GCGC 2 cut(s) 127, 727
HinP1I GCGC 2 cut(s) 127, 727
HinfI GANTC 4 cut(s) 71, 486, 704, 764
HphI GGTGA 2 cut(s) 103, 119
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 2 cut(s) 59, 175
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 625
HpyAV CCTTC 4 cut(s) 226, 262, 500, 564
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 7 cut(s) 49, 133, 138, 313, 348, 595, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 733
HpyF3I CTNAG 5 cut(s) 77, 172, 220, 516, 758
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 3 cut(s) 37, 133, 450
HspAI GCGC 2 cut(s) 127, 727
Kzo9I GATC 4 cut(s) 51, 59, 175, 786
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 412
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 200
MalI GATC 4 cut(s) 53, 61, 177, 788
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 51, 59, 175, 786
MboII GAAGA 3 cut(s) 206, 299, 366
MflI RGATCY 1 cut(s) 786
MluCI AATT 5 cut(s) 84, 101, 110, 237, 670
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 89, 513, 531, 694, 766
Mph1103I ATGCAT 2 cut(s) 135, 315
MseI TTAA 2 cut(s) 308, 741
MslI CAYNNNNRTG 1 cut(s) 44
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 135, 733
NdeII GATC 4 cut(s) 51, 59, 175, 786
NlaIII CATG 3 cut(s) 37, 133, 450
NlaIV GGNNCC 1 cut(s) 666
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 2 cut(s) 135, 315
NspI RCATGY 2 cut(s) 133, 450
NspV TTCGAA 1 cut(s) 614
PaeI GCATGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 71, 704, 764
PflMI CCANNNNNTGG 3 cut(s) 461, 634, 674
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PscI ACATGT 1 cut(s) 446
PsiI TTATAA 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 1 cut(s) 665
PsuI RGATCY 1 cut(s) 786
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 2 cut(s) 308, 741
Sau3AI GATC 4 cut(s) 51, 59, 175, 786
Sau96I GGNCC 1 cut(s) 665
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 1 cut(s) 495
SfaNI GCATC 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 614
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
SphI GCATGC 1 cut(s) 133
Sse9I AATT 5 cut(s) 84, 101, 110, 237, 670
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 242, 525, 614
TasI AATT 5 cut(s) 84, 101, 110, 237, 670
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 3 cut(s) 71, 704, 764
Tru1I TTAA 2 cut(s) 308, 741
Tru9I TTAA 2 cut(s) 308, 741
TscAI CASTG 2 cut(s) 407, 613
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 2 cut(s) 407, 613
Van91I CCANNNNNTGG 3 cut(s) 461, 634, 674
VpaK11BI GGWCC 1 cut(s) 665
XapI RAATTY 4 cut(s) 84, 101, 110, 237
XceI RCATGY 2 cut(s) 133, 450
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 170
Zsp2I ATGCAT 2 cut(s) 135, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.