Rorug01G0063300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
10410701 .. 10413244
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0063300.1

Sequence Viewer

Length: 417 bp
ATGGCTTCCATGGCTGCCACCAACTCTTCCTCCAATCCTTCACCAAACACCTCCAATTTTATCAAACTTACAGAATCCAACTACTTGGTTTCCCCTGATATATGGGTTCTCTGCATAACTAAAGGGTCGAACGTGAAGATTCAACTAGGAGGGAGTCGCTTGAACAAAATGTTGAAGTTCAAACTTTGGTGTACAAGCAACTATATGACGCTTAGCCATATGATGGCAGGAAAGCTGAAGCCAACTGTTATGCAACAATCAGTATTTGGGGGCCTTCTTCTGGATATATCACAAGTTCTGAAGTTCATAGTGATAATAGGGGCAACAACTACTAGTACACGTTTTGGAAAGCTGTTAGGAATGGAAAGCTCAAGAATATTTGTCTTCCCTTCTCGTTCTGGTTTGATTTCAAGTTGA

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

10.16

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AcuI CTGAAG 2 cut(s) 257, 320
AfaI GTAC 2 cut(s) 193, 337
AfiI CCNNNNNNNGG 2 cut(s) 223, 280
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 143, 163, 175, 181, 411
AhlI ACTAGT 1 cut(s) 332
AluBI AGCT 3 cut(s) 235, 352, 369
AluI AGCT 3 cut(s) 235, 352, 369
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 376
BccI CCATC 1 cut(s) 217
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 146, 333
BisI GCNGC 1 cut(s) 15
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 376
Bpu1102I GCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 280
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 223, 280
BshFI GGCC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 223, 280
BsnI GGCC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 191
Bsp1720I GCTNAGC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 9
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 192, 336
CviAII CATG 1 cut(s) 10
CviJI RGCY 8 cut(s) 5, 14, 216, 235, 241, 273, 352, 369
CviKI_1 RGCY 8 cut(s) 5, 14, 216, 235, 241, 273, 352, 369
CviQI GTAC 2 cut(s) 192, 336
DdeI CTNAG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 257, 320
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 13
FatI CATG 1 cut(s) 9
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 146, 333
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 13
HinfI GANTC 3 cut(s) 74, 139, 154
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 2 cut(s) 192, 338
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 281, 372
Hpy8I GTNNAC 2 cut(s) 192, 338
HpyAV CCTTC 3 cut(s) 48, 284, 399
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 2 cut(s) 132, 340
HpyCH4V TGCA 2 cut(s) 114, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 2 cut(s) 132, 340
Hsp92II CATG 1 cut(s) 13
LpnPI CCDG 4 cut(s) 108, 213, 266, 384
MaeI CTAG 2 cut(s) 146, 333
MaeII ACGT 2 cut(s) 132, 340
MboII GAAGA 4 cut(s) 18, 148, 269, 376
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 40, 61, 143
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 219
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 74, 139
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
RsaI GTAC 2 cut(s) 193, 337
RsaNI GTAC 2 cut(s) 192, 336
SatI GCNGC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 163
SetI ASST 6 cut(s) 53, 135, 237, 343, 354, 371
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 1 cut(s) 55
SspI AATATT 1 cut(s) 378
SspMI CTAG 2 cut(s) 146, 333
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 2 cut(s) 135, 343
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 55
TatI WGTACW 2 cut(s) 191, 335
TfiI GAWTC 2 cut(s) 74, 139
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 223
XspI CTAG 2 cut(s) 146, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.