Rw1G006330
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
12933995 .. 12936022
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006330.1

Sequence Viewer

Length: 2028 bp
ATGGGAGCAGCAAAGCAAACAGATTTAGCATGCATTTCAGAAGGTGAAGGATTATCATGTGTAGAACAACATGCCATCATTGAAGCAGCACCGATTGTGTCATCCTACAATGAAAAAATCCGTCCTCTCCTTGACGCCGTTGACAAGCTCAGGAGCCTCATGGTTATGGAGGAAGGCATTCAGCTCCCCACCATTGTTGTTGTAGGTGACCAATCATCTGGCAAGTCAAGCGTCCTTGAATCCCTGGCCGGCATCAGCTTGCCACGTGGACAAGGTATCTGCACCAGGGTACCACTTATAATGAGGCTTCAACACCGCTATAGTCCTGGGCCAGAGTTCCAGTTGGAGTACAATGGCAAAGTTGAGCACACTGATGAGGTCAACATTGCTGATGATATTGTCAGTGCCACCAATGTTATTGCTGGTGGAGGTAAGGGAATTTCTAACACCCCATTGACTCTGTTGGTGAAAAAGAATGGTGTTCCTGATTTGACTATGGTTGATCTCCCTGGAATCACTAGAGTTCCTGTTCATGGTCAGCCCGAGGATATCTATGATCAAATCAAAGACATGATCATGGATTATATCAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTTGATTTTACAACTTGTGAATCCATCAGGATGTCACAGAGTGTGGATAGAGCTGGTGATAGGACTCTGGCTGTGGTCACAAAGGTTGATAAGGCGCCCGAAGGACTATTAGAGAAGGTTACAGCAGATGATGTTGGTATTGGTCTTGGTTATGTCTGTGTGAGGAACCGGATTGGAGATGAAACTTATGAGGAGGCAAGGGCTAAATCTCTACAACTTTTTCAAACTCATCCTTTGCTGTCCAAGATTGACAAGTCTATGGTTGGAATTCCAGTTCTGGCTCAAAAGTTGGTGCAGATTCAAGCTTCTAGCATAGCTAGAAACTTGCCAGACATTGTCAAGAAGATAAATGACAAGCTGAGTTCTTGTCTCTTGGAGTTGAACAAAATGCCAAAGAGTCTGTCATCTGTTGCTGAAGCCATGACCGCATTTATGCAGATCGTCGGATCATCAAAAGAATCTCTTAGGAAAATTCTAGTGAGAGGAGAATTTGATGAGTTCCCTGATGACGAGCACATGCATTGCACTGCTCGGCTTTATAAGATGCTTAATCAGTACTCAGATCAACTTCACAAGTGTGAAGAAAGTGACCCAAAAAGTAACTTCTTAGTAGAGGAGATCAGGATTTTGGAGGAAGCAAATGGTATTAGTCTTCCGAATTTTGTTCCCCGCAATGCTTTTCTTGTTATCTTGCAGGGAAAAGTGAAGGGAATCTCGAGCATACCTATTGTATTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGTTAATGCATAATACAGAAAACTATTATCACCTTCAGGTATGCACCAGAAGAGCTGGCCATAATCTTATAACAAGGATGAAAGAAAGGTCACTTGAGTGGACAATGGAGATGGTGGAAATGGAGAAGCTGACTGATTATACCGGTAATCCAGAATATGTATCCGAATGGAGCAGGCTGATGGGTCAACAAGACGCATTTCTACATGCGGTCTTATCTAAAAATGACTCTACGGTCTCTGTAGAGGGTATTGGGGAAGTTGAAGTTGGAGTCCTTCGGCAGTATGTTTCTCTTTTTTTCTTGGACGTGAATAATCATGTTCTGTCTCAGGCTTTTGACTTGAAAATGAGGATGACTGCCTATTGGAAAGTTGTTCTGAGAAGGCTTGTTGATTGTATGGCTTTGCATTTGCAGTTAAGTGTTTCAAAACTTGTGAACAAAGACATGGAGATTGAGATTGTGAAAGAGTTGATGGGACCAAATTGTGGTGGTGGGATTGAGAAAATGCTAGAGGAATCTCCAGCAGTTTCCGTCAAGCGCGAGAAGCTGGTAAAGAGCATAAAAAAGCTTAGGGATTCCAAAGAGGTTGTTGCTAAGATCTTGGATGGCGTTGCTACCTAA

Protein Analysis

675

Amino Acids

75.06

Weight (kDa)

5.51

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 65 - 239 9.3e-40 Dynamin family
Dynamin_M PF01031 247 - 529 1.7e-61 Dynamin central region
GED PF02212 579 - 668 5e-09 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 299, 1170, 1478
AasI GACNNNNNNGTC 1 cut(s) 1640
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 2 cut(s) 289, 724
AccB7I CCANNNNNTGG 1 cut(s) 1892
AccII CGCG 1 cut(s) 1947
AciI CCGC 4 cut(s) 316, 1056, 1300, 1616
AclWI GGATC 1 cut(s) 1084
AcoI YGGCCR 2 cut(s) 246, 1465
AcsI RAATTY 5 cut(s) 438, 897, 1101, 1118, 1288
AcuI CTGAAG 3 cut(s) 615, 1065, 1427
AcvI CACGTG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 135, 725
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 3 cut(s) 291, 350, 1187
AfiI CCNNNNNNNGG 2 cut(s) 533, 1892
AgeI ACCGGT 1 cut(s) 1550
AjiI CACGTC 1 cut(s) 1714
AjnI CCWGG 4 cut(s) 243, 284, 325, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 1656, 1688
AleI CACNNNNGTG 2 cut(s) 1206, 1504
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
Alw21I GWGCWC 2 cut(s) 369, 1146
Alw26I GTCTC 3 cut(s) 1004, 1648, 1737
AlwI GGATC 1 cut(s) 1084
Ama87I CYCGRG 2 cut(s) 542, 1345
AoxI GGCC 3 cut(s) 246, 329, 1465
ApeKI GCWGC 2 cut(s) 8, 86
ApoI RAATTY 5 cut(s) 438, 897, 1101, 1118, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
AsiGI ACCGGT 1 cut(s) 1550
Asp700I GAANNNNTTC 1 cut(s) 177
Asp718I GGTACC 1 cut(s) 289
AspLEI GCGC 2 cut(s) 727, 1947
AspS9I GGNCC 2 cut(s) 329, 1883
AsuHPI GGTGA 5 cut(s) 56, 218, 478, 698, 1430
AvaI CYCGRG 2 cut(s) 542, 1345
AvaII GGWCC 1 cut(s) 1883
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BalI TGGCCA 1 cut(s) 1467
BanI GGYRCC 2 cut(s) 289, 724
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 2 cut(s) 369, 1146
BbvI GCAGC 2 cut(s) 20, 98
BccI CCATC 6 cut(s) 83, 662, 1513, 1582, 1873, 2006
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 4 cut(s) 245, 286, 327, 510
BciVI GTATCC 1 cut(s) 1579
BclI TGATCA 2 cut(s) 556, 573
BcoDI GTCTC 3 cut(s) 1004, 1648, 1737
BfaI CTAG 5 cut(s) 519, 939, 948, 1106, 1916
BfmI CTRYAG 2 cut(s) 319, 1647
BfoI RGCGCY 1 cut(s) 728
BfuI GTATCC 1 cut(s) 1579
BglII AGATCT 1 cut(s) 2004
BisI GCNGC 2 cut(s) 9, 87
BlsI GCNGC 2 cut(s) 10, 88
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 4 cut(s) 245, 286, 327, 510
Bme18I GGWCC 1 cut(s) 1883
BmeT110I CYCGRG 2 cut(s) 542, 1345
BmgBI CACGTC 1 cut(s) 1714
BmgT120I GGNCC 2 cut(s) 329, 1883
BmiI GGNNCC 5 cut(s) 155, 291, 726, 797, 1884
BmrFI CCNGG 4 cut(s) 245, 286, 327, 510
BmsI GCATC 3 cut(s) 261, 612, 1164
BpiI GAAGAC 1 cut(s) 1274
BpmI CTGGAG 1 cut(s) 1911
Bpu10I CCTNAGC 2 cut(s) 149, 1976
BpuEI CTTGAG 1 cut(s) 1523
BsaAI YACGTR 1 cut(s) 266
BsaHI GRCGYC 2 cut(s) 135, 725
BsaI GGTCTC 1 cut(s) 1648
BsaJI CCNNGG 5 cut(s) 243, 285, 326, 508, 543
BsaWI WCCGGW 2 cut(s) 798, 1550
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 1892
Bse118I RCCGGY 2 cut(s) 248, 1550
Bse1I ACTGG 2 cut(s) 340, 902
Bse3DI GCAATG 3 cut(s) 384, 1150, 1309
BseBI CCWGG 4 cut(s) 245, 286, 327, 510
BseDI CCNNGG 5 cut(s) 243, 285, 326, 508, 543
BseGI GGATG 6 cut(s) 101, 666, 859, 1491, 1764, 2017
BseLI CCNNNNNNNGG 2 cut(s) 533, 1892
BseMI GCAATG 3 cut(s) 384, 1150, 1309
BseMII CTCAG 5 cut(s) 163, 980, 1203, 1748, 1775
BseNI ACTGG 2 cut(s) 340, 902
BseRI GAGGAG 3 cut(s) 836, 1128, 1259
BseXI GCAGC 2 cut(s) 20, 98
BsgI GTGCAG 2 cut(s) 265, 944
Bsh1236I CGCG 1 cut(s) 1947
BshFI GGCC 3 cut(s) 248, 331, 1467
BshNI GGYRCC 2 cut(s) 289, 724
BshTI ACCGGT 1 cut(s) 1550
BsiHKAI GWGCWC 2 cut(s) 369, 1146
BsiHKCI CYCGRG 2 cut(s) 542, 1345
BsiSI CCGG 3 cut(s) 249, 799, 1551
BslFI GGGAC 1 cut(s) 1896
BslI CCNNNNNNNGG 2 cut(s) 533, 1892
BsmAI GTCTC 3 cut(s) 1004, 1648, 1737
BsmFI GGGAC 1 cut(s) 1896
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 3 cut(s) 248, 331, 1467
Bso31I GGTCTC 1 cut(s) 1648
BsoBI CYCGRG 2 cut(s) 542, 1345
Bsp1286I GDGCHC 2 cut(s) 369, 1146
Bsp143I GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
BspACI CCGC 4 cut(s) 316, 1056, 1300, 1616
BspANI GGCC 3 cut(s) 248, 331, 1467
BspCNI CTCAG 5 cut(s) 162, 981, 1202, 1747, 1776
BspFNI CGCG 1 cut(s) 1947
BspLI GGNNCC 5 cut(s) 155, 291, 726, 797, 1884
BspPI GGATC 1 cut(s) 1084
BspQI GCTCTTC 1 cut(s) 1453
BspT107I GGYRCC 2 cut(s) 289, 724
BspTNI GGTCTC 1 cut(s) 1648
BsrDI GCAATG 3 cut(s) 384, 1150, 1309
BsrFI RCCGGY 2 cut(s) 248, 1550
BsrI ACTGG 2 cut(s) 340, 902
BssAI RCCGGY 2 cut(s) 248, 1550
BssECI CCNNGG 5 cut(s) 243, 285, 326, 508, 543
BssMI GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
BssNI GRCGYC 2 cut(s) 135, 725
Bst2UI CCWGG 4 cut(s) 245, 286, 327, 510
Bst4CI ACNGT 2 cut(s) 631, 1642
Bst6I CTCTTC 2 cut(s) 591, 1453
BstACI GRCGYC 2 cut(s) 135, 725
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 5 cut(s) 31, 250, 260, 1465, 1583
BstDEI CTNAG 9 cut(s) 149, 989, 1094, 1189, 1237, 1734, 1784, 1976, 2001
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 6 cut(s) 101, 666, 859, 1491, 1764, 2017
BstFNI CGCG 1 cut(s) 1947
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 727, 1947
BstKTI GATC 8 cut(s) 505, 559, 576, 1071, 1079, 1195, 1251, 2007
BstMAI GTCTC 3 cut(s) 1004, 1648, 1737
BstMBI GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
BstMWI GCNNNNNNNGC 3 cut(s) 228, 1055, 1951
BstNI CCWGG 4 cut(s) 245, 286, 327, 510
BstNSI RCATGY 4 cut(s) 33, 74, 1150, 1616
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 4 cut(s) 243, 284, 325, 508
BstSFI CTRYAG 2 cut(s) 319, 1647
BstUI CGCG 1 cut(s) 1947
BstV1I GCAGC 2 cut(s) 20, 98
BstV2I GAAGAC 1 cut(s) 1274
BstX2I RGATCY 1 cut(s) 2004
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 2004
BsuI GTATCC 1 cut(s) 1579
BsuRI GGCC 3 cut(s) 248, 331, 1467
BtrI CACGTC 1 cut(s) 1714
BtsCI GGATG 6 cut(s) 101, 666, 859, 1491, 1764, 2017
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 3 cut(s) 369, 409, 1155
Cac8I GCNNGC 5 cut(s) 31, 250, 260, 1465, 1583
CfoI GCGC 2 cut(s) 727, 1947
Cfr10I RCCGGY 2 cut(s) 248, 1550
Cfr13I GGNCC 2 cut(s) 329, 1883
CseI GACGC 3 cut(s) 143, 220, 1610
Csp6I GTAC 3 cut(s) 290, 349, 1186
CspAI ACCGGT 1 cut(s) 1550
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviQI GTAC 3 cut(s) 290, 349, 1186
DdeI CTNAG 9 cut(s) 149, 989, 1094, 1189, 1237, 1734, 1784, 1976, 2001
DinI GGCGCC 1 cut(s) 726
DpnI GATC 8 cut(s) 504, 558, 575, 1070, 1078, 1194, 1250, 2006
DpnII GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
DraIII CACNNNGTG 1 cut(s) 671
DrdI GACNNNNNNGTC 1 cut(s) 1640
DseDI GACNNNNNNGTC 1 cut(s) 1640
EaeI YGGCCR 2 cut(s) 246, 1465
Eam1104I CTCTTC 2 cut(s) 591, 1453
EarI CTCTTC 2 cut(s) 591, 1453
Eco31I GGTCTC 1 cut(s) 1648
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 1883
Eco57I CTGAAG 3 cut(s) 615, 1065, 1427
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 542, 1345
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 897
EcoRII CCWGG 4 cut(s) 243, 284, 325, 508
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 3 cut(s) 35, 1152, 1419
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FalI AAGNNNNNCTT 2 cut(s) 1077, 1109
FaqI GGGAC 1 cut(s) 1896
FauI CCCGC 1 cut(s) 1307
FbaI TGATCA 2 cut(s) 556, 573
Fnu4HI GCNGC 2 cut(s) 9, 87
FokI GGATG 6 cut(s) 88, 673, 846, 1498, 1771, 2024
Fsp4HI GCNGC 2 cut(s) 9, 87
FspBI CTAG 5 cut(s) 519, 939, 948, 1106, 1916
GlaI GCGC 2 cut(s) 726, 1946
GluI GCNGC 2 cut(s) 9, 87
GsuI CTGGAG 1 cut(s) 1911
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 3 cut(s) 248, 331, 1467
HapII CCGG 3 cut(s) 249, 799, 1551
HgaI GACGC 3 cut(s) 143, 220, 1610
HhaI GCGC 2 cut(s) 727, 1947
Hin1I GRCGYC 2 cut(s) 135, 725
Hin6I GCGC 2 cut(s) 725, 1945
HinP1I GCGC 2 cut(s) 725, 1945
HincII GTYRAC 3 cut(s) 142, 382, 1595
HindII GTYRAC 3 cut(s) 142, 382, 1595
HindIII AAGCTT 2 cut(s) 933, 1973
HpaII CCGG 3 cut(s) 249, 799, 1551
HphI GGTGA 5 cut(s) 56, 218, 478, 698, 1430
Hpy166II GTNNAC 6 cut(s) 142, 269, 382, 1509, 1595, 1843
Hpy188I TCNGA 6 cut(s) 40, 1076, 1192, 1287, 1573, 1785
Hpy188III TCNNGA 7 cut(s) 151, 485, 658, 970, 1252, 1345, 1559
Hpy8I GTNNAC 6 cut(s) 142, 269, 382, 1509, 1595, 1843
Hpy99I CGWCG 1 cut(s) 1076
HpyCH4III ACNGT 2 cut(s) 631, 1642
HpyCH4IV ACGT 2 cut(s) 265, 1713
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 1055, 1951
HpyF3I CTNAG 9 cut(s) 149, 989, 1094, 1189, 1237, 1734, 1784, 1976, 2001
HpySE526I ACGT 2 cut(s) 265, 1713
Hsp92I GRCGYC 2 cut(s) 135, 725
HspAI GCGC 2 cut(s) 725, 1945
KasI GGCGCC 1 cut(s) 724
KpnI GGTACC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 556, 573
Kzo9I GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
LguI GCTCTTC 1 cut(s) 1453
LmnI GCTCC 4 cut(s) 5, 153, 189, 1578
Lsp1109I GCAGC 2 cut(s) 20, 98
LweI GCATC 3 cut(s) 261, 612, 1164
MaeI CTAG 5 cut(s) 519, 939, 948, 1106, 1916
MaeII ACGT 2 cut(s) 265, 1713
MaeIII GTNAC 7 cut(s) 206, 663, 706, 748, 1217, 1229, 1497
MalI GATC 8 cut(s) 504, 558, 575, 1070, 1078, 1194, 1250, 2006
MboI GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
MboII GAAGA 6 cut(s) 608, 985, 1223, 1274, 1403, 1470
MflI RGATCY 1 cut(s) 2004
MhlI GDGCHC 2 cut(s) 369, 1146
MlsI TGGCCA 1 cut(s) 1467
MluCI AATT 6 cut(s) 438, 897, 1101, 1118, 1288, 1888
MluNI TGGCCA 1 cut(s) 1467
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 5 cut(s) 451, 688, 1036, 1628, 1686
MmeI TCCRAC 4 cut(s) 324, 874, 1054, 1654
Mox20I TGGCCA 1 cut(s) 1467
Mph1103I ATGCAT 3 cut(s) 35, 1152, 1419
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 1467
MseI TTAA 3 cut(s) 1179, 1412, 1823
MslI CAYNNNNRTG 6 cut(s) 164, 372, 575, 659, 1206, 1504
Msp20I TGGCCA 1 cut(s) 1467
MspI CCGG 3 cut(s) 249, 799, 1551
MspR9I CCNGG 4 cut(s) 245, 286, 327, 510
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 4 cut(s) 245, 286, 327, 510
MvnI CGCG 1 cut(s) 1947
MwoI GCNNNNNNNGC 3 cut(s) 228, 1055, 1951
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 725
NdeII GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 5 cut(s) 155, 291, 726, 797, 1884
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 5 cut(s) 206, 663, 706, 1217, 1497
NsiI ATGCAT 3 cut(s) 35, 1152, 1419
NspI RCATGY 4 cut(s) 33, 74, 1150, 1616
OliI CACNNNNGTG 2 cut(s) 1206, 1504
PaeI GCATGC 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 1345
PciSI GCTCTTC 1 cut(s) 1453
PctI GAATGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 8 cut(s) 239, 513, 650, 928, 1088, 1341, 1922, 1982
PflFI GACNNNGTC 1 cut(s) 965
PflMI CCANNNNNTGG 1 cut(s) 1892
PinAI ACCGGT 1 cut(s) 1550
PkrI GCNGC 2 cut(s) 10, 88
PleI GAGTC 5 cut(s) 451, 688, 1035, 1628, 1685
PluTI GGCGCC 1 cut(s) 728
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 5 cut(s) 451, 688, 1035, 1628, 1685
Ppu21I YACGTR 1 cut(s) 266
PsiI TTATAA 3 cut(s) 299, 1170, 1478
Psp6I CCWGG 4 cut(s) 243, 284, 325, 508
PspCI CACGTG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 4 cut(s) 243, 284, 325, 508
PspN4I GGNNCC 5 cut(s) 155, 291, 726, 797, 1884
PspPI GGNCC 2 cut(s) 329, 1883
PsuI RGATCY 1 cut(s) 2004
PsyI GACNNNGTC 1 cut(s) 965
RsaI GTAC 3 cut(s) 291, 350, 1187
RsaNI GTAC 3 cut(s) 290, 349, 1186
RseI CAYNNNNRTG 6 cut(s) 164, 372, 575, 659, 1206, 1504
SapI GCTCTTC 1 cut(s) 1453
SaqAI TTAA 3 cut(s) 1179, 1412, 1823
SatI GCNGC 2 cut(s) 9, 87
Sau3AI GATC 8 cut(s) 502, 556, 573, 1068, 1076, 1192, 1248, 2004
Sau96I GGNCC 2 cut(s) 329, 1883
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 5 cut(s) 451, 688, 1036, 1628, 1686
ScrFI CCNGG 4 cut(s) 245, 286, 327, 510
SduI GDGCHC 2 cut(s) 369, 1146
SfaNI GCATC 3 cut(s) 261, 612, 1164
SfcI CTRYAG 2 cut(s) 319, 1647
SfoI GGCGCC 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 1345
SinI GGWCC 1 cut(s) 1883
SlaI CTCGAG 1 cut(s) 1345
SmiMI CAYNNNNRTG 6 cut(s) 164, 372, 575, 659, 1206, 1504
SmlI CTYRAG 2 cut(s) 1345, 1502
SmoI CTYRAG 2 cut(s) 1345, 1502
SphI GCATGC 1 cut(s) 33
Sse9I AATT 6 cut(s) 438, 897, 1101, 1118, 1288, 1888
SsiI CCGC 4 cut(s) 316, 1056, 1300, 1616
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 5 cut(s) 519, 939, 948, 1106, 1916
StyD4I CCNGG 4 cut(s) 243, 284, 325, 508
TaaI ACNGT 2 cut(s) 631, 1642
TaiI ACGT 2 cut(s) 268, 1716
TaqI TCGA 1 cut(s) 1346
TasI AATT 6 cut(s) 438, 897, 1101, 1118, 1288, 1888
TatI WGTACW 2 cut(s) 348, 1185
TfiI GAWTC 8 cut(s) 239, 513, 650, 928, 1088, 1341, 1922, 1982
Tru1I TTAA 3 cut(s) 1179, 1412, 1823
Tru9I TTAA 3 cut(s) 1179, 1412, 1823
TscAI CASTG 3 cut(s) 376, 409, 1162
TseFI GTSAC 5 cut(s) 206, 663, 706, 1217, 1497
TseI GCWGC 2 cut(s) 8, 86
Tsp45I GTSAC 5 cut(s) 206, 663, 706, 1217, 1497
TspDTI ATGAA 4 cut(s) 126, 521, 825, 1502
TspGWI ACGGA 2 cut(s) 110, 1927
TspRI CASTG 3 cut(s) 376, 409, 1162
Tth111I GACNNNGTC 1 cut(s) 965
Van91I CCANNNNNTGG 1 cut(s) 1892
VpaK11BI GGWCC 1 cut(s) 1883
XapI RAATTY 5 cut(s) 438, 897, 1101, 1118, 1288
XceI RCATGY 4 cut(s) 33, 74, 1150, 1616
XhoI CTCGAG 1 cut(s) 1345
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 519, 939, 948, 1106, 1916
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 3 cut(s) 35, 1152, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.