Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

918166 .. 919298

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1009000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGAATGACTGCCTATTGGAAGGTTGTTTTGAGGAGGTTTGTGGACTTCATGGCATTGCACTTGCAGCTGTCTGTTTTTAACCTTGTGAACAAAGAGATGGAAGCTGAGATTATGAATGAGTTGATGGGACATTACGATGGGGGAATCGAGAGGATGTTGGAGGAGTCGCCGGCAATGGCAGTAAAGCGTGAGAAGCTTAACAAAAGCATAAAAAAGCTTAGGGATTCTAAGGAGGTAGTGGCCAAGATTATGGACAGCATTATCACTTATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

94

Amino Acids

10.88

Weight (kDa)

8.96

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	3 - 84	9e-11	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	243
AluBI	AGCT	4 cut(s)	70, 107, 199, 220
AluI	AGCT	4 cut(s)	70, 107, 199, 220
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	94, 121, 134
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	2 cut(s)	56, 183
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	2 cut(s)	56, 183
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	2 cut(s)	49, 179
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	56, 183
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	108, 221, 231
BstF5I	GGATG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 196
BstV1I	GCAGC	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	172
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	5 cut(s)	70, 107, 199, 220, 245
CviKI_1	RGCY	5 cut(s)	70, 107, 199, 220, 245
DdeI	CTNAG	3 cut(s)	108, 221, 231
EaeI	YGGCCR	1 cut(s)	243
FaeI	CATG	1 cut(s)	55
FaiI	YATR	5 cut(s)	53, 116, 212, 254, 273
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	197, 218
HinfI	GANTC	3 cut(s)	147, 167, 227
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	46, 91
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	46, 91
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	61, 67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 196
HpyF3I	CTNAG	3 cut(s)	108, 221, 231
Hsp92II	CATG	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
LpnPI	CCDG	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	27, 30, 147, 157, 229
Mox20I	TGGCCA	1 cut(s)	245
MroNI	GCCGGC	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	81, 201, 280
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	67, 196
NaeI	GCCGGC	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	147, 227
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	81, 201, 280
SatI	GCNGC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	176
SetI	ASST	8 cut(s)	27, 41, 72, 87, 109, 201, 222, 240
SgeI	CNNG	7 cut(s)	64, 76, 98, 163, 185, 203, 259
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	147, 227
Tru1I	TTAA	3 cut(s)	81, 201, 280
Tru9I	TTAA	3 cut(s)	81, 201, 280
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	40, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.