Rh1CG078600
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
16507107 .. 16510626
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG078600.1

Sequence Viewer

Length: 2001 bp
ATGGGAGCAGCAAAGCAAATAGATTTAGCATGCATTTCAGAAGGTGAAGGATCATCAAGTGTAGAACAACATGCCATCATTGAAGCCGCACCGATTGTGTCATCCTACAATGACAAAATCCGTCCTCTCCTTGACGCCGTTGACAAGCTCAGGAGCCTCATGGTTATGGAGGAAGGCATTCAGCTCCCCACCATTGTTGTTGTAGGTGACCAATCATCTGGTAAGTCAAGCGTCCTTGAATCCCTGGCCGGCATCAGCCTGCCACGTGGACAAGGTATCTGCACCAGGGTACCCCTTATAATGAGGCTTCAACACCACTCTAGTCCTGAACCAGAGTTCCGGTTGGAGTACAATGGCAAATTTGAGCACACTGATGAGGTCAACATTGCTGATGATATTGTCAATGCCACCAATGTTATTGCTGGTGGAGGTAAGGGAATTTCTAACACCCCATTGACTCTGTTGGTGAAAAAGAATGGTGTTCCTGATTTGACTATGGTTGATCTCCCTGGAATCACTAGAGTTCCTGTTCATGGTCAGCCTGAGGATATCTATGATCAAATCAAAGACATGATCATGCATTATATAAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTCGATTTTACAACTTGTGAATCCATCAGGATGTCACAGACTGTGGATAAAGCTGGTGATAGGACTCTGGCTGTGGTCACAAAGGCTGATAAGGCGCCCGAAGGACTATTAGAGAAGGTTACAGCAGATGATGTTAGTATTGGTCTTGGTTATGTTTGTGTGAGGAACCGGATTGGAGATGAAACTTATGAGGAGGCAAGGGCTATATCTCAACAACTTTTTCAAACTCATCCTTTGCTGTCCAAGATTGATAAATCTATGGTTGGAATTCCAGTTCTGGCTCAAAAGTTGGTGCACATTCAAGCTTCTAGCATAGCTAGAAACTTGCCAGACATTGTCAAGAAGATAAATGACAAGCTGAGTTTTTGTCTTTTGGAGTTGAACAAGATGCCAAAGAAACTGTCATCTGTTAGTGAAGCCATGACCACGTTTATGCAGATCATCGGATCATCAAAAGAATCGCTTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGACAAGCGCATGCATTGCACTGCTCGGCTTTATGAGATGCTCAATCAGTACTCAGATCAACTTCAAAAGTGTGAAGAAAGTGACCCGAAAAAGAACTTCTTAGTAGAGGAGATCAAGATTTTGGAGGAAGCGAAAGGTATTAGTCTTCCGAATTATATTCCCCGCAATGCTTTTCTTGTTATCTTGCAGGGAAAAGTGAAGGGAATTTCGAGCATACCTATTGGGTTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGTTAATGCATAATACAGAAAACTATTATCAGCTTCAGGTATGCACCAGAAGAGCTGGCCGTAATCTTATAACAAGGATGAAAGAAAGGTCAGTTCAGTGGATGATGGAGATAGTGGAAATGGAGAACCTGACTGATTATACATGTAATCCAGAATATGTATCCGAATGTAGTAGGCTTATGGGTCAACAAGGCACATTTATACATTATGTGTTAAATGAAAACCACTCTAGGATCAATGTAGAGGGTATTGGGGAAGTTGAAGTTGGAGTCCTTCGGCAGTATCCTCAAGTTCTCTCTCAGGCTTTCGACTTGAAAATGAGGATGATTGCCTATTGGAAAGTTGTTCTGAGAAGGCTTGTTGATTGCATGGCTTTGCATTTGCAGTTGAGTGTTTCGAAACTTGTGAACCAAGAGATGGAGAGTGAGATTGTGAATGAGTTGATGGGACCAAATTGTGGTGGTGGGATTGAGAAAATGCTGGAGGAATCTCCAGCAGTTGCCATCAAGCGTGAGAAGCTGATTAAGAGCATCAAAAAGCTCAGGGATTCCAAAGAGGTTGTTGCTAAGATCTTGGATGGTGTTGCTACCTAA

Protein Analysis

666

Amino Acids

74.41

Weight (kDa)

5.71

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 65 - 239 2.2e-40 Dynamin family
Dynamin_M PF01031 247 - 528 2.1e-60 Dynamin central region
GED PF02212 570 - 659 9.1e-10 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 299, 1478
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 2 cut(s) 289, 724
AccB7I CCANNNNNTGG 2 cut(s) 1825, 1865
AciI CCGC 2 cut(s) 87, 1300
AclWI GGATC 3 cut(s) 58, 1084, 1649
AcoI YGGCCR 2 cut(s) 246, 1465
AcsI RAATTY 7 cut(s) 359, 438, 897, 1101, 1118, 1127, 1341
AcuI CTGAAG 2 cut(s) 615, 1427
AcvI CACGTG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 135, 725
AfaI GTAC 3 cut(s) 291, 350, 1187
AfiI CCNNNNNNNGG 3 cut(s) 533, 1825, 1865
AflIII ACRYGT 1 cut(s) 1550
AjnI CCWGG 3 cut(s) 243, 284, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 1656, 1688
AloI GAACNNNNNNTCC 4 cut(s) 321, 353, 888, 920
Alw21I GWGCWC 2 cut(s) 369, 927
Alw44I GTGCAC 1 cut(s) 923
AlwI GGATC 3 cut(s) 58, 1084, 1649
AoxI GGCC 2 cut(s) 246, 1465
ApaLI GTGCAC 1 cut(s) 923
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 7 cut(s) 359, 438, 897, 1101, 1118, 1127, 1341
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
Asp700I GAANNNNTTC 1 cut(s) 177
Asp718I GGTACC 1 cut(s) 289
AspLEI GCGC 2 cut(s) 727, 1146
AspS9I GGNCC 1 cut(s) 1856
AsuHPI GGTGA 5 cut(s) 56, 218, 478, 698, 1120
AsuII TTCGAA 1 cut(s) 1805
AvaII GGWCC 1 cut(s) 1856
AxyI CCTNAGG 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 927
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 2 cut(s) 289, 724
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 2 cut(s) 369, 927
BbvI GCAGC 1 cut(s) 20
BccI CCATC 7 cut(s) 83, 662, 1507, 1819, 1846, 1919, 1979
BceAI ACGGC 2 cut(s) 122, 1452
BciT130I CCWGG 3 cut(s) 245, 286, 510
BciVI GTATCC 2 cut(s) 1579, 1701
BclI TGATCA 2 cut(s) 556, 573
BfaI CTAG 5 cut(s) 321, 519, 939, 948, 1638
BfoI RGCGCY 1 cut(s) 728
BfuI GTATCC 2 cut(s) 1579, 1701
BglII AGATCT 1 cut(s) 1977
BisI GCNGC 2 cut(s) 9, 87
BlsI GCNGC 2 cut(s) 10, 88
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 3 cut(s) 245, 286, 510
Bme18I GGWCC 1 cut(s) 1856
BmgT120I GGNCC 1 cut(s) 1856
BmiI GGNNCC 5 cut(s) 155, 291, 726, 797, 1857
BmrFI CCNGG 3 cut(s) 245, 286, 510
BmsI GCATC 5 cut(s) 261, 612, 1008, 1164, 1947
BpiI GAAGAC 1 cut(s) 1274
BpmI CTGGAG 2 cut(s) 1884, 1910
Bpu10I CCTNAGC 3 cut(s) 149, 1094, 1949
Bpu14I TTCGAA 1 cut(s) 1805
BpuEI CTTGAG 1 cut(s) 1680
BsaAI YACGTR 1 cut(s) 266
BsaHI GRCGYC 2 cut(s) 135, 725
BsaJI CCNNGG 3 cut(s) 243, 285, 508
BsaWI WCCGGW 2 cut(s) 339, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 533, 1825, 1865
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 902
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 3 cut(s) 384, 1150, 1309
BseBI CCWGG 3 cut(s) 245, 286, 510
BseDI CCNNGG 3 cut(s) 243, 285, 508
BseGI GGATG 7 cut(s) 101, 666, 859, 1491, 1515, 1737, 1990
BseLI CCNNNNNNNGG 3 cut(s) 533, 1825, 1865
BseMI GCAATG 3 cut(s) 384, 1150, 1309
BseMII CTCAG 7 cut(s) 163, 534, 980, 1203, 1721, 1748, 1963
BseNI ACTGG 1 cut(s) 902
BseRI GAGGAG 3 cut(s) 836, 1128, 1259
BseSI GKGCMC 1 cut(s) 927
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 248, 1467
BshNI GGYRCC 2 cut(s) 289, 724
BsiHKAI GWGCWC 2 cut(s) 369, 927
BsiSI CCGG 3 cut(s) 249, 340, 799
BslFI GGGAC 1 cut(s) 1869
BslI CCNNNNNNNGG 3 cut(s) 533, 1825, 1865
BsmFI GGGAC 1 cut(s) 1869
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 2 cut(s) 248, 1467
Bsp119I TTCGAA 1 cut(s) 1805
Bsp1286I GDGCHC 2 cut(s) 369, 927
BspACI CCGC 2 cut(s) 87, 1300
BspANI GGCC 2 cut(s) 248, 1467
BspCNI CTCAG 7 cut(s) 162, 535, 981, 1202, 1720, 1749, 1962
BspLI GGNNCC 5 cut(s) 155, 291, 726, 797, 1857
BspPI GGATC 3 cut(s) 58, 1084, 1649
BspQI GCTCTTC 1 cut(s) 1453
BspT104I TTCGAA 1 cut(s) 1805
BspT107I GGYRCC 2 cut(s) 289, 724
BsrDI GCAATG 3 cut(s) 384, 1150, 1309
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 902
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 243, 285, 508
BssNI GRCGYC 2 cut(s) 135, 725
Bst2UI CCWGG 3 cut(s) 245, 286, 510
Bst4CI ACNGT 3 cut(s) 631, 673, 1032
Bst6I CTCTTC 2 cut(s) 591, 1453
BstACI GRCGYC 2 cut(s) 135, 725
BstAPI GCANNNNNTGC 1 cut(s) 1152
BstBAI YACGTR 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 1805
BstC8I GCNNGC 5 cut(s) 31, 250, 260, 1148, 1465
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 7 cut(s) 101, 666, 859, 1491, 1515, 1737, 1990
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 727, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 722, 1152, 1924
BstNI CCWGG 3 cut(s) 245, 286, 510
BstNSI RCATGY 4 cut(s) 33, 74, 1150, 1554
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 243, 284, 508
BstSLI GKGCMC 1 cut(s) 927
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 1274
BstX2I RGATCY 1 cut(s) 1977
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 1977
Bsu36I CCTNAGG 1 cut(s) 543
BsuI GTATCC 2 cut(s) 1579, 1701
BsuRI GGCC 2 cut(s) 248, 1467
BtsCI GGATG 7 cut(s) 101, 666, 859, 1491, 1515, 1737, 1990
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 3 cut(s) 369, 1155, 1511
Cac8I GCNNGC 5 cut(s) 31, 250, 260, 1148, 1465
CfoI GCGC 2 cut(s) 727, 1146
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 1856
CseI GACGC 2 cut(s) 143, 220
Csp6I GTAC 3 cut(s) 290, 349, 1186
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviQI GTAC 3 cut(s) 290, 349, 1186
DinI GGCGCC 1 cut(s) 726
EaeI YGGCCR 2 cut(s) 246, 1465
Eam1104I CTCTTC 2 cut(s) 591, 1453
EarI CTCTTC 2 cut(s) 591, 1453
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 1856
Eco57I CTGAAG 2 cut(s) 615, 1427
Eco72I CACGTG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 897, 1127
EcoRII CCWGG 3 cut(s) 243, 284, 508
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 4 cut(s) 35, 582, 1152, 1419
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FalI AAGNNNNNCTT 4 cut(s) 1077, 1109, 1220, 1252
FaqI GGGAC 1 cut(s) 1869
FauI CCCGC 1 cut(s) 1307
FbaI TGATCA 2 cut(s) 556, 573
Fnu4HI GCNGC 2 cut(s) 9, 87
FokI GGATG 7 cut(s) 88, 673, 846, 1498, 1522, 1744, 1997
Fsp4HI GCNGC 2 cut(s) 9, 87
FspBI CTAG 5 cut(s) 321, 519, 939, 948, 1638
GlaI GCGC 2 cut(s) 726, 1145
GluI GCNGC 2 cut(s) 9, 87
GsuI CTGGAG 2 cut(s) 1884, 1910
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 2 cut(s) 248, 1467
HapII CCGG 3 cut(s) 249, 340, 799
HgaI GACGC 2 cut(s) 143, 220
HhaI GCGC 2 cut(s) 727, 1146
Hin1I GRCGYC 2 cut(s) 135, 725
Hin6I GCGC 2 cut(s) 725, 1144
HinP1I GCGC 2 cut(s) 725, 1144
HincII GTYRAC 3 cut(s) 142, 382, 1595
HindII GTYRAC 3 cut(s) 142, 382, 1595
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 9 cut(s) 239, 457, 513, 650, 694, 1088, 1677, 1895, 1955
HpaII CCGG 3 cut(s) 249, 340, 799
HphI GGTGA 5 cut(s) 56, 218, 478, 698, 1120
Hpy166II GTNNAC 6 cut(s) 142, 269, 382, 925, 1595, 1816
Hpy188I TCNGA 6 cut(s) 40, 1076, 1192, 1287, 1573, 1758
Hpy188III TCNNGA 7 cut(s) 151, 326, 485, 658, 970, 1252, 1559
Hpy8I GTNNAC 6 cut(s) 142, 269, 382, 925, 1595, 1816
HpyAV CCTTC 9 cut(s) 35, 41, 167, 725, 739, 1330, 1366, 1691, 1755
HpyCH4III ACNGT 3 cut(s) 631, 673, 1032
HpyCH4IV ACGT 2 cut(s) 265, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 1152, 1924
HpySE526I ACGT 2 cut(s) 265, 1058
Hsp92I GRCGYC 2 cut(s) 135, 725
HspAI GCGC 2 cut(s) 725, 1144
KasI GGCGCC 1 cut(s) 724
KpnI GGTACC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 556, 573
LguI GCTCTTC 1 cut(s) 1453
LmnI GCTCC 3 cut(s) 5, 153, 189
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 5 cut(s) 261, 612, 1008, 1164, 1947
MaeI CTAG 5 cut(s) 321, 519, 939, 948, 1638
MaeII ACGT 2 cut(s) 265, 1058
MaeIII GTNAC 5 cut(s) 206, 663, 706, 748, 1217
MboII GAAGA 6 cut(s) 608, 985, 1223, 1274, 1403, 1470
MflI RGATCY 1 cut(s) 1977
MhlI GDGCHC 2 cut(s) 369, 927
MluCI AATT 9 cut(s) 359, 438, 897, 1101, 1118, 1127, 1288, 1341, 1861
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 3 cut(s) 451, 688, 1686
MmeI TCCRAC 3 cut(s) 324, 874, 1654
Mph1103I ATGCAT 4 cut(s) 35, 582, 1152, 1419
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 1412, 1622, 1932
MslI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
MspI CCGG 3 cut(s) 249, 340, 799
MspR9I CCNGG 3 cut(s) 245, 286, 510
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 3 cut(s) 245, 286, 510
MwoI GCNNNNNNNGC 3 cut(s) 722, 1152, 1924
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 725
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 5 cut(s) 155, 291, 726, 797, 1857
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 4 cut(s) 206, 663, 706, 1217
NsiI ATGCAT 4 cut(s) 35, 582, 1152, 1419
NspI RCATGY 4 cut(s) 33, 74, 1150, 1554
NspV TTCGAA 1 cut(s) 1805
PaeI GCATGC 2 cut(s) 33, 1150
PciI ACATGT 1 cut(s) 1550
PciSI GCTCTTC 1 cut(s) 1453
PctI GAATGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 6 cut(s) 239, 513, 650, 1088, 1895, 1955
PflFI GACNNNGTC 1 cut(s) 965
PflMI CCANNNNNTGG 2 cut(s) 1825, 1865
PkrI GCNGC 2 cut(s) 10, 88
PleI GAGTC 3 cut(s) 451, 688, 1685
PluTI GGCGCC 1 cut(s) 728
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 3 cut(s) 451, 688, 1685
Ppu21I YACGTR 1 cut(s) 266
PscI ACATGT 1 cut(s) 1550
PsiI TTATAA 2 cut(s) 299, 1478
Psp6I CCWGG 3 cut(s) 243, 284, 508
PspCI CACGTG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 3 cut(s) 243, 284, 508
PspN4I GGNNCC 5 cut(s) 155, 291, 726, 797, 1857
PspPI GGNCC 1 cut(s) 1856
PsuI RGATCY 1 cut(s) 1977
PsyI GACNNNGTC 1 cut(s) 965
RsaI GTAC 3 cut(s) 291, 350, 1187
RsaNI GTAC 3 cut(s) 290, 349, 1186
RseI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
SapI GCTCTTC 1 cut(s) 1453
SaqAI TTAA 3 cut(s) 1412, 1622, 1932
SatI GCNGC 2 cut(s) 9, 87
Sau96I GGNCC 1 cut(s) 1856
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 3 cut(s) 451, 688, 1686
ScrFI CCNGG 3 cut(s) 245, 286, 510
SduI GDGCHC 2 cut(s) 369, 927
SfaNI GCATC 5 cut(s) 261, 612, 1008, 1164, 1947
SfoI GGCGCC 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 1805
SinI GGWCC 1 cut(s) 1856
SmiMI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
SmlI CTYRAG 1 cut(s) 1695
SmoI CTYRAG 1 cut(s) 1695
SphI GCATGC 2 cut(s) 33, 1150
Sse9I AATT 9 cut(s) 359, 438, 897, 1101, 1118, 1127, 1288, 1341, 1861
SsiI CCGC 2 cut(s) 87, 1300
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 5 cut(s) 321, 519, 939, 948, 1638
StyD4I CCNGG 3 cut(s) 243, 284, 508
TaaI ACNGT 3 cut(s) 631, 673, 1032
TaiI ACGT 2 cut(s) 268, 1061
TaqI TCGA 4 cut(s) 633, 1346, 1716, 1805
TasI AATT 9 cut(s) 359, 438, 897, 1101, 1118, 1127, 1288, 1341, 1861
TatI WGTACW 2 cut(s) 348, 1185
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 6 cut(s) 239, 513, 650, 1088, 1895, 1955
Tru1I TTAA 3 cut(s) 1412, 1622, 1932
Tru9I TTAA 3 cut(s) 1412, 1622, 1932
TscAI CASTG 3 cut(s) 376, 1162, 1511
TseFI GTSAC 4 cut(s) 206, 663, 706, 1217
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 4 cut(s) 206, 663, 706, 1217
TspDTI ATGAA 5 cut(s) 521, 825, 1140, 1502, 1641
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 376, 1162, 1511
Tth111I GACNNNGTC 1 cut(s) 965
Van91I CCANNNNNTGG 2 cut(s) 1825, 1865
VneI GTGCAC 1 cut(s) 923
VpaK11BI GGWCC 1 cut(s) 1856
XapI RAATTY 7 cut(s) 359, 438, 897, 1101, 1118, 1127, 1341
XceI RCATGY 4 cut(s) 33, 74, 1150, 1554
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 321, 519, 939, 948, 1638
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 4 cut(s) 35, 582, 1152, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.