Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

54054407 .. 54056413

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAGCAGCAAAGCAAACAGATTTAGCATGCATTTCAGAAGGTGAAGGATCATCATGTGTAGAACAACATGCCATCATTGAAGCCGCACCGATTGTGTCATCCTACAATGACAAAATCCGTCCTCTGCTTGACGCCGTTGACAAGCTCAGGAGCCTCATGGTTATGGAGGAAGGCATTCAGCTCCCCACCATTGTTGTTATCATCGGATCATCAAAAGAATCGCTTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGACAAGCGCATGCATTGCACTGCTCGGCTTTATGAGATGCTCAATCAGTACTCAGATCAACTTCAAAAGTGTGAAGAAAGTGACCCGAAAAAGAACTTCTTAGGAAAAGTGAAGGGAATTTCGAGCATACCTATTGGGTTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGCTAATGCATAATACAGAAAACTATTATCAGCTTCAGGTATGCACCAGAAGAGCTGGCCGTAATCTTATAACAAGGATGAAAGAATGGTCAGTTCAGTGGATGATGGAGATAGTGGAAATGGAGAACCTGACTGATTATACATGTAATCCAGAATATGTATCCGAATGTAGTAGGCTTATGGGTCAACAAGGCACATTTATACATTTGGTGTTAAATCAAAACCACTCTACGATCGATGTAGAGGGTATTGGGGAAGTTGGAGTTGGAGTCCTTCGGCAGTATCCTCAAGTTCTCTCTCAGGCTTTCGACTTGAAAATGAGGATGATTGCCTATTGGAAAGTTGTTCTGAGAAGGCTTGTTGATTGTATGGCTTTGCATTTGCAGTTGAGTGTTTCGAAACTTGTGAATCAAGAGATGGAGAGTGAGATTGTGAATGAGTTGATGGGACCAAATTGTGGTGGTGGGATTGAGAAAAAAATGCTGGAGGAATCTCCAGCAGTCGCCATCAAGCGCGAGAAGCTGATTAAGAGCATCAAAAAGCTCAGGGATTCCAAAGAGGTTGTTGCTAAGATCTTGGATGGTGTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

349

Amino Acids

39.53

Weight (kDa)

5.7

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	126 - 210	3.2e-11	Dynamin central region
GED	PF02212	252 - 342	5.7e-09	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccII	CGCG	1 cut(s)	969
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	2 cut(s)	58, 217
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	4 cut(s)	234, 251, 260, 387
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	83, 335, 437, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	6 cut(s)	148, 184, 487, 509, 976, 997
AluI	AGCT	6 cut(s)	148, 184, 487, 509, 976, 997
AlwI	GGATC	2 cut(s)	58, 217
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	4 cut(s)	234, 251, 260, 387
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	279, 969
AspS9I	GGNCC	1 cut(s)	902
AsuHPI	GGTGA	2 cut(s)	56, 253
AsuII	TTCGAA	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	902
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	6 cut(s)	83, 553, 865, 892, 968, 1028
BceAI	ACGGC	2 cut(s)	122, 498
BciVI	GTATCC	2 cut(s)	625, 747
BfuI	GTATCC	2 cut(s)	625, 747
BglII	AGATCT	1 cut(s)	1026
BisI	GCNGC	2 cut(s)	9, 87
BlsI	GCNGC	2 cut(s)	10, 88
BmcAI	AGTACT	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	2 cut(s)	155, 903
BmsI	GCATC	2 cut(s)	297, 996
BpmI	CTGGAG	2 cut(s)	933, 959
Bpu10I	CCTNAGC	3 cut(s)	149, 227, 998
Bpu14I	TTCGAA	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse3DI	GCAATG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	690
BseGI	GGATG	5 cut(s)	101, 537, 561, 783, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	5 cut(s)	163, 336, 767, 794, 1012
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	969
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	690
BsiEI	CGRYCG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	851
Bsp143I	GATC	5 cut(s)	50, 209, 325, 687, 1026
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	5 cut(s)	162, 335, 766, 795, 1011
BspDI	ATCGAT	1 cut(s)	690
BspFNI	CGCG	1 cut(s)	969
BspLI	GGNNCC	2 cut(s)	155, 903
BspPI	GGATC	2 cut(s)	58, 217
BspQI	GCTCTTC	1 cut(s)	499
BspT104I	TTCGAA	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	283
BssMI	GATC	5 cut(s)	50, 209, 325, 687, 1026
BssNI	GRCGYC	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	31, 281, 511
BstDEI	CTNAG	8 cut(s)	149, 227, 322, 370, 753, 803, 998, 1023
BstF5I	GGATG	5 cut(s)	101, 537, 561, 783, 1039
BstFNI	CGCG	1 cut(s)	969
BstHHI	GCGC	2 cut(s)	279, 969
BstKTI	GATC	5 cut(s)	53, 212, 328, 690, 1029
BstMBI	GATC	5 cut(s)	50, 209, 325, 687, 1026
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 973
BstNSI	RCATGY	4 cut(s)	33, 74, 283, 600
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	1026
BstYI	RGATCY	1 cut(s)	1026
Bsu15I	ATCGAT	1 cut(s)	690
BsuI	GTATCC	2 cut(s)	625, 747
BsuRI	GGCC	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	101, 537, 561, 783, 1039
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 557
Cac8I	GCNNGC	3 cut(s)	31, 281, 511
CfoI	GCGC	2 cut(s)	279, 969
Cfr13I	GGNCC	1 cut(s)	902
ClaI	ATCGAT	1 cut(s)	690
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	6 cut(s)	30, 57, 71, 160, 280, 597
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	8 cut(s)	149, 227, 322, 370, 753, 803, 998, 1023
DpnI	GATC	5 cut(s)	52, 211, 327, 689, 1028
DpnII	GATC	5 cut(s)	50, 209, 325, 687, 1026
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	902
Eco57I	CTGAAG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	260
EcoT22I	ATGCAT	3 cut(s)	35, 285, 465
FaeI	CATG	6 cut(s)	33, 60, 74, 163, 283, 600
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 353, 385
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	6 cut(s)	29, 56, 70, 159, 279, 596
Fnu4HI	GCNGC	2 cut(s)	9, 87
FokI	GGATG	5 cut(s)	88, 544, 568, 790, 1046
Fsp4HI	GCNGC	2 cut(s)	9, 87
GlaI	GCGC	2 cut(s)	278, 968
GluI	GCNGC	2 cut(s)	9, 87
GsuI	CTGGAG	2 cut(s)	933, 959
HaeIII	GGCC	1 cut(s)	513
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	279, 969
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	33, 60, 74, 163, 283, 600
Hin6I	GCGC	2 cut(s)	277, 967
HinP1I	GCGC	2 cut(s)	277, 967
HincII	GTYRAC	2 cut(s)	142, 641
HindII	GTYRAC	2 cut(s)	142, 641
HinfI	GANTC	5 cut(s)	221, 723, 862, 944, 1004
HphI	GGTGA	2 cut(s)	56, 253
Hpy166II	GTNNAC	2 cut(s)	142, 641
Hpy188I	TCNGA	5 cut(s)	40, 209, 325, 619, 804
Hpy188III	TCNNGA	3 cut(s)	151, 605, 866
Hpy8I	GTNNAC	2 cut(s)	142, 641
HpyAV	CCTTC	7 cut(s)	35, 41, 167, 376, 412, 737, 801
HpyCH4V	TGCA	7 cut(s)	33, 283, 288, 463, 498, 832, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 973
HpyF3I	CTNAG	8 cut(s)	149, 227, 322, 370, 753, 803, 998, 1023
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	33, 60, 74, 163, 283, 600
HspAI	GCGC	2 cut(s)	277, 967
Kzo9I	GATC	5 cut(s)	50, 209, 325, 687, 1026
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	3 cut(s)	5, 153, 189
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	2 cut(s)	297, 996
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	52, 211, 327, 689, 1028
MboI	GATC	5 cut(s)	50, 209, 325, 687, 1026
MboII	GAAGA	3 cut(s)	356, 449, 516
MflI	RGATCY	1 cut(s)	1026
MluCI	AATT	5 cut(s)	234, 251, 260, 387, 907
MlyI	GAGTC	1 cut(s)	732
MmeI	TCCRAC	2 cut(s)	694, 700
MnlI	CCTC	9 cut(s)	135, 163, 167, 239, 691, 750, 768, 934, 1006
Mph1103I	ATGCAT	3 cut(s)	35, 285, 465
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	2 cut(s)	668, 981
MslI	CAYNNNNRTG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	2 cut(s)	285, 973
NdeII	GATC	5 cut(s)	50, 209, 325, 687, 1026
NlaIII	CATG	6 cut(s)	33, 60, 74, 163, 283, 600
NlaIV	GGNNCC	2 cut(s)	155, 903
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	350
NsiI	ATGCAT	3 cut(s)	35, 285, 465
NspI	RCATGY	4 cut(s)	33, 74, 283, 600
NspV	TTCGAA	1 cut(s)	851
PaeI	GCATGC	2 cut(s)	33, 283
PciI	ACATGT	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	4 cut(s)	221, 862, 944, 1004
PflMI	CCANNNNNTGG	1 cut(s)	911
PkrI	GCNGC	2 cut(s)	10, 88
Ple19I	CGATCG	1 cut(s)	690
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PscI	ACATGT	1 cut(s)	596
PsiI	TTATAA	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	155, 903
PspPI	GGNCC	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	1026
PvuI	CGATCG	1 cut(s)	690
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	668, 981
SatI	GCNGC	2 cut(s)	9, 87
Sau3AI	GATC	5 cut(s)	50, 209, 325, 687, 1026
Sau96I	GGNCC	1 cut(s)	902
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	732
SfaNI	GCATC	2 cut(s)	297, 996
SfuI	TTCGAA	1 cut(s)	851
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
SphI	GCATGC	2 cut(s)	33, 283
Sse9I	AATT	5 cut(s)	234, 251, 260, 387, 907
SsiI	CCGC	1 cut(s)	87
TaqI	TCGA	4 cut(s)	392, 690, 762, 851
TasI	AATT	5 cut(s)	234, 251, 260, 387, 907
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	4 cut(s)	221, 862, 944, 1004
Tru1I	TTAA	2 cut(s)	668, 981
Tru9I	TTAA	2 cut(s)	668, 981
TscAI	CASTG	2 cut(s)	295, 557
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	273, 548
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	295, 557
Van91I	CCANNNNNTGG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	4 cut(s)	234, 251, 260, 387
XceI	RCATGY	4 cut(s)	33, 74, 283, 600
XmnI	GAANNNNTTC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	3 cut(s)	35, 285, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.