Rroxscaffold_4G00324390
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
55808957 .. 55811487
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324390.1

Sequence Viewer

Length: 2136 bp
ATGGGAAAGAACAAAAACAAATCAAAAACCAGCAGTAGTAGTTCAGATATGGGAGGAAAGAATGCTCAAACTGATTTAGGAGTCAAACCATCAAGCACTGTCTTCGCAAAATTTGAAGAAGGTTCATCTTCATCAGTTTCACTTGCACCACGAGCACGTAATGAAGCAGACCAACAACATGCCGTATCTCTCAACGTCAAAGAGGCACCGATTGTGTCTTCCTACAACGACAAAATCCGTCCCCTCCTAGATGCCGTTGACAAGCTCCGTAACCTGATGGTTATGGAAGAAGGGATCCAGCTCCCCACTATTGTCGTCGTCGGAGACCAATCATCTGGAAAGTCTAGCGTCCTGGAATCCCTCGCGAGCATCAGCCTGCCACGTGGACAAGGTATCTGCACCAGGGTGCCTCTTATAATGAGGCTTCAACACCATTCAAGTTCGGAACCGGAGCTTTCCTTGGAATACAATGGTAAAGTTGAACGCACTGATGAGGCCAGAGTTTGTGAAGATATTGTTAAAGCGACTGATGATATTGCAGGCGGAGGTAAGGGTATCTCTAACACGCCTTTAACTCTGTTAGTGAAGAAGAATGGTGTTCCGGATTTAACAATGGTGGATCTCCCTGGAATTACCAGAGTTCCTGTTCATGGTCAGCCTGAGAATATCTATGACCAGATCAAAGATATGATCATGGAATATATAAATCCTGAACAGAGTATCATTCTGAATGTATTATCGGCTACTGTCGATTTTACCACTTGTGAATCAATTAGGATGTCACAGAGTGTGGACAAAACTGGTGAGAGGACTCTTGCTGTGGTTACAAAAGTTGACAAGGCACCGGAGGGACTTGTAGAGAAAGTAACAGGTGATGATGTTAACATAGGACTTGGCTATGTCTGTGTCAGGAATAGGATTGGAGAGGAAACCTATGAGGAGGCAAGGGCTTTCTCTGACCAACTATTCCAAACTCATCCTCTGCTTTCTAAAATTGATAAATCCATGGTCGGAGTTCATGTTTTAGCACAGAAGTTGGTGCAAATTCAAGCTACAAGTATAGCCAGGAGCTTACCTGAGATCGTGAAGAAGATAGATGACAAGCTGAATTTTTGTCTTTCGGAGCTGAACAAACTGCCTAGAGGTCTTTCATCTTTTGCTGAGGCGATAACGGCTTTCATGCAGATAATTGGATCGTCGAAAGAATCGCTTAGTAAAATTCTTGTGAGAGGAGAATTTGATGAGTACCCAGAAGAGAAGCACATGCATGGGACAGCTAGACTGGTTGAGTTGCTTAATCAGTTTTCTGAAGAACTGCACGAGTGTGATGGAACTGATGTCGCAAGTAATTTCTTGATGCAGGAGATTAGGAATTTAGGGGAGGCAAAACGTATGAGTCTTCCAAATTTTCTTCCCCGCAGTGCTTTTCTGGTTATTTTGCAGGGAAAAGTGAAGGGAATTTCGAGTATTCCGATTCGATTTGTTGAGAAGATATGGGGCTACATCGAGGATGTGATGATATCTGTGTTAATGAAACATTCAGACAGTTATTATCAGCTTCAGTTGTGTGCCAAAAGAGCTGCTCATAATTTGATAGCCAAGATGAAAGAAAGGTCGATTAAGTGGATGACACAGATTGTGGAAATGGAGAAGCAGACAGATTATACATGTAATCCGGAGTATGTTACTGAATGGAAAAAGCTTATGAATAATCTTGGTGGATTTCTCCATGGAGTCCTGGAGGATACGGACGAACCTGCTTGGTTTGTTGTGGGCGATATTGGCATGGTTGAAGTTGAAGTTTTGAGGCAGTACTCGCGGGATCTTTTGTCTGACGCTTTTGACTTGAAAATGCGGATGATTGCTTATTGGAAGGTCGTTCTGAGAAGGCTGGTTGATTCCATGGCCTTGCATTTGCAGCTGAGTGTTGCAAATCTTGTGAAAAAGGACATGGAGATGGAGATTGTTACCGAGCTAATGGGACCAAATTATGCAGGTGGAATTGAGAAGATGCTGGAGGAGTCTCCTTCGGTAGCGCTGAAGCGGGAGAAGCTTAAAAAGAGCATCAACAAGCTCAAAAAGTCCAAGGAGGTTGTGGGTAGGATTATGGATGGCCTTTTCACGTATGGTGATTAA

Protein Analysis

711

Amino Acids

79.2

Weight (kDa)

5.94

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 104 - 278 2.9e-40 Dynamin family
Dynamin_M PF01031 285 - 569 6.7e-59 Dynamin central region
GED PF02212 615 - 700 1.1e-10 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AarI CACCTGC 1 cut(s) 1985
Acc36I ACCTGC 2 cut(s) 1765, 1985
AccB1I GGYRCC 3 cut(s) 205, 406, 841
AccII CGCG 2 cut(s) 365, 1819
AccIII TCCGGA 2 cut(s) 601, 1675
AciI CCGC 5 cut(s) 543, 1417, 1819, 1855, 2044
AclWI GGATC 5 cut(s) 289, 302, 627, 1201, 1830
AcsI RAATTY 8 cut(s) 110, 1044, 1108, 1218, 1235, 1372, 1405, 1458
AcuI CTGAAG 3 cut(s) 1329, 1544, 2060
AcvI CACGTG 1 cut(s) 383
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 1247, 1814
AfeI AGCGCT 1 cut(s) 2037
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 1667
AgsI TTSAA 8 cut(s) 116, 428, 438, 482, 1049, 1793, 1799, 1849
AjnI CCWGG 5 cut(s) 351, 401, 625, 1064, 1737
AleI CACNNNNGTG 2 cut(s) 404, 1323
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 318, 2028
AlwI GGATC 5 cut(s) 289, 302, 627, 1201, 1830
Aor13HI TCCGGA 2 cut(s) 601, 1675
Aor51HI AGCGCT 1 cut(s) 2037
AoxI GGCC 3 cut(s) 495, 1905, 2113
ApeKI GCWGC 2 cut(s) 1580, 1918
ApoI RAATTY 8 cut(s) 110, 1044, 1108, 1218, 1235, 1372, 1405, 1458
AspLEI GCGC 1 cut(s) 2038
AspS9I GGNCC 1 cut(s) 1982
AsuHPI GGTGA 2 cut(s) 815, 884
AvaII GGWCC 1 cut(s) 1982
BamHI GGATCC 1 cut(s) 294
BanI GGYRCC 3 cut(s) 205, 406, 841
BauI CACGAG 2 cut(s) 150, 1319
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 3 cut(s) 94, 210, 1391
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 2 cut(s) 1567, 1930
BccI CCATC 5 cut(s) 97, 271, 1322, 1951, 2105
BceAI ACGGC 3 cut(s) 167, 239, 1188
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 5 cut(s) 353, 403, 627, 1066, 1739
BciVI GTATCC 1 cut(s) 1738
BclI TGATCA 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 318, 2028
BfaI CTAG 4 cut(s) 248, 345, 1140, 1278
BfoI RGCGCY 1 cut(s) 2039
BfuAI ACCTGC 2 cut(s) 1765, 1985
BfuI GTATCC 1 cut(s) 1738
BisI GCNGC 2 cut(s) 1581, 1919
BlsI GCNGC 2 cut(s) 1582, 1920
BmcAI AGTACT 1 cut(s) 1814
Bme1390I CCNGG 5 cut(s) 353, 403, 627, 1066, 1739
Bme18I GGWCC 1 cut(s) 1982
BmgT120I GGNCC 1 cut(s) 1982
BmiI GGNNCC 6 cut(s) 207, 296, 408, 447, 843, 1983
BmrFI CCNGG 5 cut(s) 353, 403, 627, 1066, 1739
BmsI GCATC 5 cut(s) 241, 378, 1347, 2001, 2073
BpiI GAAGAC 3 cut(s) 94, 210, 1391
BpmI CTGGAG 2 cut(s) 1760, 2036
Bpu10I CCTNAGC 1 cut(s) 1161
BsaAI YACGTR 3 cut(s) 158, 383, 2124
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 7 cut(s) 402, 459, 625, 1005, 1729, 1902, 2085
BsaWI WCCGGW 4 cut(s) 448, 601, 844, 1675
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 2 cut(s) 805, 1287
BseAI TCCGGA 2 cut(s) 601, 1675
BseBI CCWGG 5 cut(s) 353, 403, 627, 1066, 1739
BseDI CCNNGG 7 cut(s) 402, 459, 625, 1005, 1729, 1902, 2085
BseGI GGATG 6 cut(s) 783, 976, 1516, 1632, 1863, 2116
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMII CTCAG 5 cut(s) 651, 1068, 1152, 1874, 1913
BseNI ACTGG 2 cut(s) 805, 1287
BseRI GAGGAG 3 cut(s) 953, 1245, 2033
BseXI GCAGC 2 cut(s) 1567, 1930
BsgI GTGCAG 2 cut(s) 382, 1301
Bsh1236I CGCG 2 cut(s) 365, 1819
BshFI GGCC 3 cut(s) 497, 1907, 2115
BshNI GGYRCC 3 cut(s) 205, 406, 841
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 4 cut(s) 449, 602, 845, 1676
BslFI GGGAC 4 cut(s) 225, 864, 1285, 1995
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 2 cut(s) 318, 2028
BsmFI GGGAC 4 cut(s) 225, 864, 1285, 1995
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 497, 1907, 2115
Bso31I GGTCTC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 2 cut(s) 601, 1675
Bsp143I GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
Bsp19I CCATGG 3 cut(s) 1005, 1729, 1902
Bsp68I TCGCGA 1 cut(s) 365
BspACI CCGC 5 cut(s) 543, 1417, 1819, 1855, 2044
BspANI GGCC 3 cut(s) 497, 1907, 2115
BspCNI CTCAG 5 cut(s) 652, 1069, 1153, 1875, 1914
BspEI TCCGGA 2 cut(s) 601, 1675
BspFNI CGCG 2 cut(s) 365, 1819
BspLI GGNNCC 6 cut(s) 207, 296, 408, 447, 843, 1983
BspMI ACCTGC 2 cut(s) 1765, 1985
BspPI GGATC 5 cut(s) 289, 302, 627, 1201, 1830
BspT107I GGYRCC 3 cut(s) 205, 406, 841
BspTNI GGTCTC 1 cut(s) 318
BsrI ACTGG 2 cut(s) 805, 1287
BssECI CCNNGG 7 cut(s) 402, 459, 625, 1005, 1729, 1902, 2085
BssMI GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
BssSI CACGAG 2 cut(s) 150, 1319
BssT1I CCWWGG 5 cut(s) 459, 1005, 1729, 1902, 2085
Bst2BI CACGAG 2 cut(s) 150, 1319
Bst2UI CCWGG 5 cut(s) 353, 403, 627, 1066, 1739
Bst4CI ACNGT 3 cut(s) 100, 748, 1547
Bst6I CTCTTC 1 cut(s) 1248
BstBAI YACGTR 3 cut(s) 158, 383, 2124
BstC8I GCNNGC 3 cut(s) 367, 377, 541
BstDEI CTNAG 6 cut(s) 660, 1077, 1161, 1211, 1883, 1922
BstDSI CCRYGG 3 cut(s) 1005, 1729, 1902
BstF5I GGATG 6 cut(s) 783, 976, 1516, 1632, 1863, 2116
BstFNI CGCG 2 cut(s) 365, 1819
BstH2I RGCGCY 1 cut(s) 2039
BstHHI GCGC 1 cut(s) 2038
BstKTI GATC 7 cut(s) 297, 622, 681, 693, 1083, 1196, 1825
BstMAI GTCTC 2 cut(s) 318, 2028
BstMBI GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
BstMWI GCNNNNNNNGC 7 cut(s) 152, 1172, 1577, 1782, 1816, 1918, 2050
BstNI CCWGG 5 cut(s) 353, 403, 627, 1066, 1739
BstNSI RCATGY 3 cut(s) 182, 1267, 1671
BstSCI CCNGG 5 cut(s) 351, 401, 625, 1064, 1737
BstUI CGCG 2 cut(s) 365, 1819
BstV1I GCAGC 2 cut(s) 1567, 1930
BstV2I GAAGAC 3 cut(s) 94, 210, 1391
BstX2I RGATCY 3 cut(s) 294, 619, 1822
BstXI CCANNNNNNTGG 1 cut(s) 335
BstYI RGATCY 3 cut(s) 294, 619, 1822
BsuI GTATCC 1 cut(s) 1738
BsuRI GGCC 3 cut(s) 497, 1907, 2115
BtgI CCRYGG 3 cut(s) 1005, 1729, 1902
BtsCI GGATG 6 cut(s) 783, 976, 1516, 1632, 1863, 2116
BtsI GCAGTG 1 cut(s) 1426
BtsIMutI CAGTG 3 cut(s) 96, 486, 1426
BtuMI TCGCGA 1 cut(s) 365
BveI ACCTGC 2 cut(s) 1765, 1985
Cac8I GCNNGC 3 cut(s) 367, 377, 541
CfoI GCGC 1 cut(s) 2038
Cfr13I GGNCC 1 cut(s) 1982
CseI GACGC 2 cut(s) 337, 1844
Csp6I GTAC 2 cut(s) 1246, 1813
CviQI GTAC 2 cut(s) 1246, 1813
DdeI CTNAG 6 cut(s) 660, 1077, 1161, 1211, 1883, 1922
DpnI GATC 7 cut(s) 296, 621, 680, 692, 1082, 1195, 1824
DpnII GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
DraIII CACNNNGTG 1 cut(s) 788
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
EciI GGCGGA 1 cut(s) 558
Eco130I CCWWGG 5 cut(s) 459, 1005, 1729, 1902, 2085
Eco31I GGTCTC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 1521
Eco47I GGWCC 1 cut(s) 1982
Eco47III AGCGCT 1 cut(s) 2037
Eco57I CTGAAG 3 cut(s) 1329, 1544, 2060
Eco72I CACGTG 1 cut(s) 383
EcoRII CCWGG 5 cut(s) 351, 401, 625, 1064, 1737
EcoRV GATATC 1 cut(s) 1521
EcoT14I CCWWGG 5 cut(s) 459, 1005, 1729, 1902, 2085
EcoT22I ATGCAT 1 cut(s) 1269
ErhI CCWWGG 5 cut(s) 459, 1005, 1729, 1902, 2085
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 4 cut(s) 225, 864, 1285, 1995
FauI CCCGC 3 cut(s) 1424, 1812, 2037
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 1581, 1919
FokI GGATG 6 cut(s) 790, 963, 1523, 1639, 1870, 2123
Fsp4HI GCNGC 2 cut(s) 1581, 1919
FspBI CTAG 4 cut(s) 248, 345, 1140, 1278
GlaI GCGC 1 cut(s) 2037
GluI GCNGC 2 cut(s) 1581, 1919
GsuI CTGGAG 2 cut(s) 1760, 2036
HaeII RGCGCY 1 cut(s) 2039
HaeIII GGCC 3 cut(s) 497, 1907, 2115
HapII CCGG 4 cut(s) 449, 602, 845, 1676
HgaI GACGC 2 cut(s) 337, 1844
HhaI GCGC 1 cut(s) 2038
Hin6I GCGC 1 cut(s) 2036
HinP1I GCGC 1 cut(s) 2036
HincII GTYRAC 3 cut(s) 259, 835, 883
HindII GTYRAC 3 cut(s) 259, 835, 883
HindIII AAGCTT 2 cut(s) 1700, 2051
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 4 cut(s) 449, 602, 845, 1676
HphI GGTGA 2 cut(s) 815, 884
Hpy166II GTNNAC 5 cut(s) 259, 386, 793, 835, 883
Hpy188III TCNNGA 8 cut(s) 336, 364, 602, 710, 910, 1084, 1354, 1676
Hpy8I GTNNAC 5 cut(s) 259, 386, 793, 835, 883
Hpy99I CGWCG 3 cut(s) 320, 323, 1201
HpyAV CCTTC 6 cut(s) 113, 284, 1447, 1867, 1881, 2037
HpyCH4III ACNGT 3 cut(s) 100, 748, 1547
HpyCH4IV ACGT 5 cut(s) 157, 195, 382, 1390, 2123
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 1172, 1577, 1782, 1816, 1918, 2050
HpyF3I CTNAG 6 cut(s) 660, 1077, 1161, 1211, 1883, 1922
HpySE526I ACGT 5 cut(s) 157, 195, 382, 1390, 2123
HspAI GCGC 1 cut(s) 2036
Kpn2I TCCGGA 2 cut(s) 601, 1675
Ksp22I TGATCA 1 cut(s) 690
KspAI GTTAAC 1 cut(s) 883
Kzo9I GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
LmnI GCTCC 5 cut(s) 270, 306, 451, 1068, 1123
Lsp1109I GCAGC 2 cut(s) 1567, 1930
LweI GCATC 5 cut(s) 241, 378, 1347, 2001, 2073
MaeI CTAG 4 cut(s) 248, 345, 1140, 1278
MaeII ACGT 5 cut(s) 157, 195, 382, 1390, 2123
MaeIII GTNAC 6 cut(s) 269, 780, 823, 865, 1684, 1966
MalI GATC 7 cut(s) 296, 621, 680, 692, 1082, 1195, 1824
MboI GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
MflI RGATCY 3 cut(s) 294, 619, 1822
MhlI GDGCHC 1 cut(s) 157
MlyI GAGTC 5 cut(s) 90, 805, 1405, 1743, 2030
MmeI TCCRAC 2 cut(s) 301, 991
Mph1103I ATGCAT 1 cut(s) 1269
MroI TCCGGA 2 cut(s) 601, 1675
MseI TTAA 9 cut(s) 519, 572, 608, 882, 1296, 1529, 1620, 2055, 2134
MslI CAYNNNNRTG 4 cut(s) 404, 1266, 1323, 1955
MspA1I CMGCKG 1 cut(s) 1921
MspI CCGG 4 cut(s) 449, 602, 845, 1676
MspR9I CCNGG 5 cut(s) 353, 403, 627, 1066, 1739
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 5 cut(s) 353, 403, 627, 1066, 1739
MvnI CGCG 2 cut(s) 365, 1819
MwoI GCNNNNNNNGC 7 cut(s) 152, 1172, 1577, 1782, 1816, 1918, 2050
NcoI CCATGG 3 cut(s) 1005, 1729, 1902
NdeII GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
NlaIV GGNNCC 6 cut(s) 207, 296, 408, 447, 843, 1983
NmuCI GTSAC 1 cut(s) 780
NruI TCGCGA 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 1269
NspI RCATGY 3 cut(s) 182, 1267, 1671
OliI CACNNNNGTG 2 cut(s) 404, 1323
PaqCI CACCTGC 1 cut(s) 1985
PciI ACATGT 1 cut(s) 1667
PcsI WCGNNNNNNNCGW 1 cut(s) 1469
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 5 cut(s) 356, 767, 1205, 1474, 1898
PfoI TCCNGGA 2 cut(s) 351, 1737
PkrI GCNGC 2 cut(s) 1582, 1920
PleI GAGTC 5 cut(s) 89, 805, 1404, 1742, 2029
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 5 cut(s) 89, 805, 1404, 1742, 2029
Ppu21I YACGTR 3 cut(s) 158, 383, 2124
PscI ACATGT 1 cut(s) 1667
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 5 cut(s) 351, 401, 625, 1064, 1737
PspCI CACGTG 1 cut(s) 383
PspGI CCWGG 5 cut(s) 351, 401, 625, 1064, 1737
PspN4I GGNNCC 6 cut(s) 207, 296, 408, 447, 843, 1983
PspPI GGNCC 1 cut(s) 1982
PsuI RGATCY 3 cut(s) 294, 619, 1822
PvuII CAGCTG 1 cut(s) 1921
RruI TCGCGA 1 cut(s) 365
RsaI GTAC 2 cut(s) 1247, 1814
RsaNI GTAC 2 cut(s) 1246, 1813
RseI CAYNNNNRTG 4 cut(s) 404, 1266, 1323, 1955
SaqAI TTAA 9 cut(s) 519, 572, 608, 882, 1296, 1529, 1620, 2055, 2134
SatI GCNGC 2 cut(s) 1581, 1919
Sau3AI GATC 7 cut(s) 294, 619, 678, 690, 1080, 1193, 1822
Sau96I GGNCC 1 cut(s) 1982
ScaI AGTACT 1 cut(s) 1814
SchI GAGTC 5 cut(s) 90, 805, 1405, 1743, 2030
ScrFI CCNGG 5 cut(s) 353, 403, 627, 1066, 1739
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 5 cut(s) 241, 378, 1347, 2001, 2073
SinI GGWCC 1 cut(s) 1982
SmiMI CAYNNNNRTG 4 cut(s) 404, 1266, 1323, 1955
SsiI CCGC 5 cut(s) 543, 1417, 1819, 1855, 2044
SspMI CTAG 4 cut(s) 248, 345, 1140, 1278
StyD4I CCNGG 5 cut(s) 351, 401, 625, 1064, 1737
StyI CCWWGG 5 cut(s) 459, 1005, 1729, 1902, 2085
TaaI ACNGT 3 cut(s) 100, 748, 1547
TaiI ACGT 5 cut(s) 160, 198, 385, 1393, 2126
TaqI TCGA 6 cut(s) 750, 1199, 1463, 1477, 1506, 1616
TatI WGTACW 1 cut(s) 1812
TfiI GAWTC 5 cut(s) 356, 767, 1205, 1474, 1898
Tru1I TTAA 9 cut(s) 519, 572, 608, 882, 1296, 1529, 1620, 2055, 2134
Tru9I TTAA 9 cut(s) 519, 572, 608, 882, 1296, 1529, 1620, 2055, 2134
TscAI CASTG 3 cut(s) 103, 493, 1426
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 2 cut(s) 1580, 1918
Tsp45I GTSAC 1 cut(s) 780
TspGWI ACGGA 3 cut(s) 227, 257, 1763
TspRI CASTG 3 cut(s) 103, 493, 1426
VpaK11BI GGWCC 1 cut(s) 1982
XapI RAATTY 8 cut(s) 110, 1044, 1108, 1218, 1235, 1372, 1405, 1458
XceI RCATGY 3 cut(s) 182, 1267, 1671
XcmI CCANNNNNNNNNTGG 1 cut(s) 2092
XspI CTAG 4 cut(s) 248, 345, 1140, 1278
ZrmI AGTACT 1 cut(s) 1814
Zsp2I ATGCAT 1 cut(s) 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.