Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025852.1

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

1253 .. 2593

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025852.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgtcacagagtgtggatagagctggtgataggactctggctgtggtcacaaaggttgatcaggctcccgaaggactattagagaaggttacagcagatgatgttagtataggtctcggttatgtctgtgtgaggaaccggattggagatgaaacttatgaggaggcaagggctaaatctcaacaactatttcaaacccatcctttgttgtccaggattgacaaatctatggttggaattccagttctggctcaaaggttggtgcagattcaagcttctagcatagctagaaacttgccagacattgtcaagaagataactgacaagcttagttcttgtcttttggagttgaacaacatgccaaagaagctgtcgtctgttgctgaagccatgaccgcgtttatgcagatcatcggatcatcaaaagaatcgcttaggaaaattctggtgagaggagaatttgatgaattccctgatgacaagcgcatgcattgcactgctcggctttctgagatgctcactcagtactcagatcaacttcacaagggtgaagaaagtgacccaaaaagtaacttcttagtagaggagatcaagattttggaggaagcaaaaggtattaatcttccgaattttgttccccacaatgcttttcttgctatcttgcagggaaaagtgaagggaatttcgagcatgcctattgggtttgttgagaaggtttggagttatattgaagaagtggttatgtctgtgttaatgcataatacagaaaactattatgagcttcaggtatgcgccagaagagctggccgtaatcttataacaaggatgaaagaaaggtccattgagtggatgatggagatagtggaaatggagcagctgactgattatacatgtaatccagaatattcatccgaatgtagtaggctgatgggtcaacaagactcatttgtacatgcggtgttatctaaaaattactctacgctctctgtagagggtattggggaagttgaagttggagtcctttggcagtataatcatgttctgtctcaggctttcgacttgaaaatgaggatgactgcctattggaaagttgttctgagaaggcttgttgattgtatggctttgcatttgcagttgagtgtttcgaaactagtgaacaaagacatggagattgagattgtgaaggagttgatggaaccaaattgtggtggtgggtttgagaaaatgctggaggaatctccagcagtttccctcaagcgcgagaagctggtaaagagcatcaaaaagcttagggattccaaagaggttgttgctaagatcttggatggcgttgctacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

446

Amino Acids

50.42

Weight (kDa)

6.02

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AccB7I	CCANNNNNTGG	2 cut(s)	846, 1205
AccII	CGCG	2 cut(s)	398, 1260
AciI	CCGC	2 cut(s)	396, 956
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	6 cut(s)	237, 441, 458, 467, 628, 681
AcuI	CTGAAG	2 cut(s)	405, 767
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	527, 951
AfiI	CCNNNNNNNGG	2 cut(s)	846, 1205
AflIII	ACRYGT	1 cut(s)	890
AgsI	TTSAA	6 cut(s)	194, 272, 352, 731, 1010, 1063
AhlI	ACTAGT	1 cut(s)	1150
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	996, 1028
AleI	CACNNNNGTG	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
Alw26I	GTCTC	2 cut(s)	119, 1050
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	1 cut(s)	805
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	6 cut(s)	237, 441, 458, 467, 628, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AseI	ATTAAT	1 cut(s)	618
AspLEI	GCGC	3 cut(s)	486, 794, 1260
AspS9I	GGNCC	1 cut(s)	837
AsuHPI	GGTGA	3 cut(s)	38, 460, 560
AsuII	TTCGAA	1 cut(s)	1145
AvaII	GGWCC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	886
BccI	CCATC	5 cut(s)	207, 847, 922, 1186, 1319
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	119, 1050
BcuI	ACTAGT	1 cut(s)	1150
BfaI	CTAG	3 cut(s)	279, 288, 1151
BfmI	CTRYAG	1 cut(s)	987
BglII	AGATCT	1 cut(s)	1317
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	837
BmgT120I	GGNCC	1 cut(s)	837
BmiI	GGNNCC	3 cut(s)	66, 137, 1197
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	504, 1287
BpmI	CTGGAG	2 cut(s)	1224, 1250
Bpu10I	CCTNAGC	2 cut(s)	434, 1289
Bpu14I	TTCGAA	1 cut(s)	1145
BpuEI	CTTGAG	1 cut(s)	1238
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	846, 1205
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	214
BseGI	GGATG	6 cut(s)	199, 831, 855, 908, 1077, 1330
BseLI	CCNNNNNNNGG	2 cut(s)	846, 1205
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	5 cut(s)	501, 536, 543, 1061, 1088
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	3 cut(s)	176, 468, 599
BseXI	GCAGC	1 cut(s)	886
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	398, 1260
BshFI	GGCC	1 cut(s)	807
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	846, 1205
BsmAI	GTCTC	2 cut(s)	119, 1050
BsnI	GGCC	1 cut(s)	807
Bso31I	GGTCTC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	1145
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
BspACI	CCGC	2 cut(s)	396, 956
BspANI	GGCC	1 cut(s)	807
BspCNI	CTCAG	5 cut(s)	502, 535, 542, 1060, 1089
BspFNI	CGCG	2 cut(s)	398, 1260
BspLI	GGNNCC	3 cut(s)	66, 137, 1197
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	793
BspT104I	TTCGAA	1 cut(s)	1145
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	793
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	949
BstBI	TTCGAA	1 cut(s)	1145
BstC8I	GCNNGC	3 cut(s)	488, 692, 805
BstF5I	GGATG	6 cut(s)	199, 831, 855, 908, 1077, 1330
BstFNI	CGCG	2 cut(s)	398, 1260
BstHHI	GCGC	3 cut(s)	486, 794, 1260
BstKTI	GATC	6 cut(s)	61, 411, 419, 535, 591, 1320
BstMAI	GTCTC	2 cut(s)	119, 1050
BstMBI	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
BstMWI	GCNNNNNNNGC	6 cut(s)	367, 395, 492, 653, 800, 1264
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	5 cut(s)	361, 490, 694, 894, 956
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	987
BstUI	CGCG	2 cut(s)	398, 1260
BstV1I	GCAGC	1 cut(s)	886
BstX2I	RGATCY	1 cut(s)	1317
BstYI	RGATCY	1 cut(s)	1317
BsuRI	GGCC	1 cut(s)	807
BtsCI	GGATG	6 cut(s)	199, 831, 855, 908, 1077, 1330
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	488, 692, 805
CfoI	GCGC	3 cut(s)	486, 794, 1260
Cfr13I	GGNCC	1 cut(s)	837
Csp6I	GTAC	2 cut(s)	526, 950
CviAII	CATG	8 cut(s)	358, 391, 487, 691, 891, 953, 1037, 1165
CviQI	GTAC	2 cut(s)	526, 950
DpnI	GATC	6 cut(s)	60, 410, 418, 534, 590, 1319
DpnII	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
DraIII	CACNNNGTG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	1 cut(s)	793
EarI	CTCTTC	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	837
Eco57I	CTGAAG	2 cut(s)	405, 767
EcoRI	GAATTC	2 cut(s)	237, 467
EcoRII	CCWGG	1 cut(s)	212
EcoT22I	ATGCAT	2 cut(s)	492, 759
FaeI	CATG	8 cut(s)	361, 394, 490, 694, 894, 956, 1040, 1168
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	8 cut(s)	357, 390, 486, 690, 890, 952, 1036, 1164
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	875
FokI	GGATG	6 cut(s)	186, 838, 862, 895, 1084, 1337
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	3 cut(s)	279, 288, 1151
GlaI	GCGC	3 cut(s)	485, 793, 1259
GluI	GCNGC	1 cut(s)	875
GsuI	CTGGAG	2 cut(s)	1224, 1250
HaeIII	GGCC	1 cut(s)	807
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	3 cut(s)	486, 794, 1260
Hin1II	CATG	8 cut(s)	361, 394, 490, 694, 894, 956, 1040, 1168
Hin6I	GCGC	3 cut(s)	484, 792, 1258
HinP1I	GCGC	3 cut(s)	484, 792, 1258
HincII	GTYRAC	1 cut(s)	935
HindII	GTYRAC	1 cut(s)	935
HindIII	AAGCTT	3 cut(s)	273, 326, 1286
HinfI	GANTC	7 cut(s)	34, 268, 428, 941, 1017, 1235, 1295
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	3 cut(s)	38, 460, 560
Hpy166II	GTNNAC	2 cut(s)	935, 1156
Hpy188I	TCNGA	6 cut(s)	416, 511, 532, 627, 913, 1098
Hpy188III	TCNNGA	4 cut(s)	68, 310, 592, 899
Hpy8I	GTNNAC	2 cut(s)	935, 1156
HpyAV	CCTTC	6 cut(s)	65, 79, 670, 706, 1095, 1177
HpyCH4V	TGCA	8 cut(s)	265, 406, 490, 495, 664, 757, 1126, 1132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	367, 395, 492, 653, 800, 1264
Hsp92II	CATG	8 cut(s)	361, 394, 490, 694, 894, 956, 1040, 1168
HspAI	GCGC	3 cut(s)	484, 792, 1258
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
LguI	GCTCTTC	1 cut(s)	793
LmnI	GCTCC	2 cut(s)	70, 871
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	2 cut(s)	504, 1287
MaeI	CTAG	3 cut(s)	279, 288, 1151
MaeIII	GTNAC	5 cut(s)	3, 46, 88, 557, 569
MalI	GATC	6 cut(s)	60, 410, 418, 534, 590, 1319
MboI	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
MboII	GAAGA	5 cut(s)	325, 563, 614, 743, 810
MflI	RGATCY	1 cut(s)	1317
MluCI	AATT	8 cut(s)	237, 441, 458, 467, 628, 681, 970, 1201
MlyI	GAGTC	3 cut(s)	28, 935, 1026
MmeI	TCCRAC	2 cut(s)	214, 994
Mph1103I	ATGCAT	2 cut(s)	492, 759
MseI	TTAA	2 cut(s)	618, 752
MslI	CAYNNNNRTG	2 cut(s)	546, 913
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	2 cut(s)	398, 1260
MwoI	GCNNNNNNNGC	6 cut(s)	367, 395, 492, 653, 800, 1264
NdeII	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
NlaIII	CATG	8 cut(s)	361, 394, 490, 694, 894, 956, 1040, 1168
NlaIV	GGNNCC	3 cut(s)	66, 137, 1197
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	3, 46, 557
NsiI	ATGCAT	2 cut(s)	492, 759
NspI	RCATGY	5 cut(s)	361, 490, 694, 894, 956
NspV	TTCGAA	1 cut(s)	1145
OliI	CACNNNNGTG	1 cut(s)	546
PaeI	GCATGC	2 cut(s)	490, 694
PciI	ACATGT	1 cut(s)	890
PciSI	GCTCTTC	1 cut(s)	793
PfeI	GAWTC	4 cut(s)	268, 428, 1235, 1295
PflFI	GACNNNGTC	1 cut(s)	305
PflMI	CCANNNNNTGG	2 cut(s)	846, 1205
PfoI	TCCNGGA	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	876
PleI	GAGTC	3 cut(s)	28, 935, 1025
PpsI	GAGTC	3 cut(s)	28, 935, 1025
PscI	ACATGT	1 cut(s)	890
PshBI	ATTAAT	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	818
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	66, 137, 1197
PspPI	GGNCC	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	1317
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	2 cut(s)	527, 951
RsaNI	GTAC	2 cut(s)	526, 950
RseI	CAYNNNNRTG	2 cut(s)	546, 913
SapI	GCTCTTC	1 cut(s)	793
SaqAI	TTAA	2 cut(s)	618, 752
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	6 cut(s)	58, 408, 416, 532, 588, 1317
Sau96I	GGNCC	1 cut(s)	837
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	3 cut(s)	28, 935, 1026
ScrFI	CCNGG	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	504, 1287
SfcI	CTRYAG	1 cut(s)	987
SfuI	TTCGAA	1 cut(s)	1145
SinI	GGWCC	1 cut(s)	837
SmiMI	CAYNNNNRTG	2 cut(s)	546, 913
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
SpeI	ACTAGT	1 cut(s)	1150
SphI	GCATGC	2 cut(s)	490, 694
Sse9I	AATT	8 cut(s)	237, 441, 458, 467, 628, 681, 970, 1201
SsiI	CCGC	2 cut(s)	396, 956
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	3 cut(s)	279, 288, 1151
StyD4I	CCNGG	1 cut(s)	212
TaqI	TCGA	3 cut(s)	686, 1056, 1145
TasI	AATT	8 cut(s)	237, 441, 458, 467, 628, 681, 970, 1201
TatI	WGTACW	2 cut(s)	525, 949
TfiI	GAWTC	4 cut(s)	268, 428, 1235, 1295
Tru1I	TTAA	2 cut(s)	618, 752
Tru9I	TTAA	2 cut(s)	618, 752
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	3 cut(s)	3, 46, 557
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	3 cut(s)	3, 46, 557
TspDTI	ATGAA	4 cut(s)	165, 480, 842, 897
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	305
Van91I	CCANNNNNTGG	2 cut(s)	846, 1205
VpaK11BI	GGWCC	1 cut(s)	837
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	6 cut(s)	237, 441, 458, 467, 628, 681
XceI	RCATGY	5 cut(s)	361, 490, 694, 894, 956
XspI	CTAG	3 cut(s)	279, 288, 1151
ZrmI	AGTACT	1 cut(s)	527
Zsp2I	ATGCAT	2 cut(s)	492, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.