Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

55389961 .. 55390503

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCCAAGATGAAAGAAAGATCAGTTAAGTGGATGATGGAGATTGTAGAAATGGAGAAGCAAACTTATTATACATGTAATCCGGAGTATGTTACTGAATGGCAAAAGCTTATGAATAATCTGGGCGGATTTCTCCATGGAGTCCTGGAGGATGAGCACAAACCTTCTAGGTTTGTTGTGGACGATACTGGCATGGTTGAAGTTGAAGATTTTACGCAGTACCCGCGGGATCTTTTATCTGAAGCTTTTGACTTGAAAATGCGGATGATTGCATATTGGAAGGTCGTTCTGAGAAGGCTCGTTGATTCCATGGCATTGCATTTGCAGCTAAGTATTGCCAATCTTGTGAACAAGGACATGGAAATGGAGATTGTTACAGAATTAATGGGACCGAATAATGCAGGTGGAATTGAGAAGATGCTGGAAGAGTCTCCTTCAGTAGCATTGAAGCGTGAGAAGCTGAAAAAGAGCATCAACAAGCTTAGAGAATCCAAGGACGATGTGGGTAAGATTATGGATAGCATTATCACGTATGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

181

Amino Acids

20.93

Weight (kDa)

5.25

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	81 - 170	9.6e-12	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	4 cut(s)	126, 224, 226, 262
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	261, 420
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	200, 206, 256, 448
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	5 cut(s)	109, 245, 328, 460, 481
AluI	AGCT	5 cut(s)	109, 245, 328, 460, 481
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	325
AseI	ATTAAT	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	408, 480
BpmI	CTGGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	531
BsaJI	CCNNGG	4 cut(s)	136, 224, 309, 492
BsaWI	WCCGGW	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	136, 224, 309, 492
BseGI	GGATG	3 cut(s)	39, 157, 270
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	20, 229
Bsp19I	CCATGG	2 cut(s)	136, 309
BspACI	CCGC	4 cut(s)	126, 224, 226, 262
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	4 cut(s)	136, 224, 309, 492
BssMI	GATC	2 cut(s)	20, 229
BssT1I	CCWWGG	3 cut(s)	136, 309, 492
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	290, 329, 482
BstDSI	CCRYGG	3 cut(s)	136, 224, 309
BstF5I	GGATG	3 cut(s)	39, 157, 270
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	23, 232
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	2 cut(s)	20, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 325, 457
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	3 cut(s)	136, 224, 309
BtsCI	GGATG	3 cut(s)	39, 157, 270
BveI	ACCTGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	389
Cfr42I	CCGCGG	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	5 cut(s)	75, 137, 193, 310, 358
CviJI	RGCY	7 cut(s)	5, 109, 245, 298, 328, 460, 481
CviKI_1	RGCY	7 cut(s)	5, 109, 245, 298, 328, 460, 481
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	290, 329, 482
DpnI	GATC	2 cut(s)	22, 231
DpnII	GATC	2 cut(s)	20, 229
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	141
Eco130I	CCWWGG	3 cut(s)	136, 309, 492
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	261, 420
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	136, 309, 492
ErhI	CCWWGG	3 cut(s)	136, 309, 492
FaeI	CATG	5 cut(s)	78, 140, 196, 313, 361
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	5 cut(s)	74, 136, 192, 309, 357
FauI	CCCGC	2 cut(s)	219, 231
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	3 cut(s)	46, 164, 277
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	5 cut(s)	78, 140, 196, 313, 361
HindIII	AAGCTT	3 cut(s)	107, 243, 479
HinfI	GANTC	4 cut(s)	141, 305, 428, 488
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	181, 349
Hpy188I	TCNGA	2 cut(s)	241, 291
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	181, 349
HpyAV	CCTTC	4 cut(s)	174, 274, 288, 444
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	272, 319, 325, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 325, 457
HpyF3I	CTNAG	3 cut(s)	290, 329, 482
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	5 cut(s)	78, 140, 196, 313, 361
Kpn2I	TCCGGA	1 cut(s)	82
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	20, 229
LpnPI	CCDG	7 cut(s)	96, 107, 131, 158, 174, 387, 407
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	408, 480
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	91, 373
MalI	GATC	2 cut(s)	22, 231
MboI	GATC	2 cut(s)	20, 229
MboII	GAAGA	3 cut(s)	218, 427, 437
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	380, 408
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	150, 437
MnlI	CCTC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	27, 383, 541
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	223, 325, 457
NcoI	CCATGG	2 cut(s)	136, 309
NdeII	GATC	2 cut(s)	20, 229
NlaIII	CATG	5 cut(s)	78, 140, 196, 313, 361
NlaIV	GGNNCC	1 cut(s)	390
NspI	RCATGY	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	392
PciI	ACATGT	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	305, 488
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	2 cut(s)	149, 436
PpsI	GAGTC	2 cut(s)	149, 436
Ppu21I	YACGTR	1 cut(s)	531
PscI	ACATGT	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	362
SacII	CCGCGG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	27, 383, 541
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	20, 229
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	150, 437
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	408, 480
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	380, 408
SsiI	CCGC	4 cut(s)	126, 224, 226, 262
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	136, 309, 492
TaiI	ACGT	1 cut(s)	533
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	380, 408
TfiI	GAWTC	2 cut(s)	305, 488
Tru1I	TTAA	3 cut(s)	27, 383, 541
Tru9I	TTAA	3 cut(s)	27, 383, 541
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	26, 128
VpaK11BI	GGWCC	1 cut(s)	389
VspI	ATTAAT	1 cut(s)	383
XceI	RCATGY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.