Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

55155308 .. 55157658

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCCAAAGAAGCTGTCGTCTGTTGCTGAAGCCATGACCGCGTTTATGCAGACCATCGGATCATCAAAAGAATCGCGTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGAAAAGCGCATGCATTGCACTGCTCGGCTTTCTGAGATGCTCACTCAGTACTCAGATCAACTTCACAAGGGTGAAGAAAGTGACCCAAAAAGTAACTTCTTAGTAGAGGAGATCAAGATTTTGGAGGAAGCAAAAGGTATTAATCTTCCGAATTTTGTTCCCCACAATGCTTTTCTTGCTATCTTGCAGGGAAAAGTGAAGGGAATTTCGAGCATACCTATTGGGTTTGTTGAGAAGGTTTGGAGTTATATTGAAGAAGTGGTTATGTCTGTGTTAATGCCTAATACAGAAAACTATTATCAGCTTCAGGTATGCGCCAAAAGAGCTGGCCGTAATCTTATAACAAGGATGAAAGAAAGGTCCATTGAGTGGATGATGGAGATAGTGGAAATGGAGCAGCTGACTGATTATACATGTAATCCAGAATATTCATCCGAATGTAGTAGGCTGATGGGTCAACAAGACTCATTTGTACATGCGGTGTTATCTAAAAATTACTCTACGATCTCTGTAGAGGGTATTGGGGAAGTTGAAGTTGGACTTCTTTGGCAGTATAATCATGTTCTGTCTCAGGCTTTCGACTTGAAAATGAGGATGACTGCCTATTGGAAAGTTGTTCTGAGAAGGCTTGTTGATTGTATGGCTTTGCATTTGCAGTTGAGTGTTTCGAAACTAGTGAACAAAGACATGGAGATTGAGATTGTGAAGGAGTTGATGGAACCAAATTGTGGTGGTGGGTTTGAGAAAATGCTGGAGGAATCTCCAGCAGTTTCCATCAAGCGCGAGAAGCTGGTAAAGAGCATCAAAAAGCTTAGGGATTCCAAAGAGGTTGTTGCTAAGATCTTGGATGGCGTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

327

Amino Acids

37.35

Weight (kDa)

6.16

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	6 - 189	2.7e-32	Dynamin central region
GED	PF02212	231 - 320	7.6e-10	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AccB7I	CCANNNNNTGG	2 cut(s)	489, 848
AccII	CGCG	3 cut(s)	41, 76, 903
AciI	CCGC	2 cut(s)	39, 599
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	5 cut(s)	84, 101, 110, 271, 324
AcuI	CTGAAG	2 cut(s)	48, 410
AfaI	GTAC	2 cut(s)	170, 594
AfiI	CCNNNNNNNGG	2 cut(s)	489, 848
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	374, 653, 706
AhlI	ACTAGT	1 cut(s)	793
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	6 cut(s)	13, 424, 446, 520, 910, 931
AluI	AGCT	6 cut(s)	13, 424, 446, 520, 910, 931
Alw26I	GTCTC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	5 cut(s)	84, 101, 110, 271, 324
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	129, 437, 903
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	103, 203
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	6 cut(s)	62, 490, 565, 829, 902, 962
BceAI	ACGGC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	693
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	630
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	840
BmsI	GCATC	2 cut(s)	147, 930
BpmI	CTGGAG	2 cut(s)	867, 893
Bpu10I	CCTNAGC	1 cut(s)	932
Bpu14I	TTCGAA	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 848
Bse3DI	GCAATG	1 cut(s)	133
BseGI	GGATG	5 cut(s)	474, 498, 551, 720, 973
BseLI	CCNNNNNNNGG	2 cut(s)	489, 848
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	5 cut(s)	144, 179, 186, 704, 731
BseRI	GAGGAG	2 cut(s)	111, 242
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	3 cut(s)	41, 76, 903
BshFI	GGCC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	489, 848
BsmAI	GTCTC	1 cut(s)	693
BsnI	GGCC	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	788
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	5 cut(s)	59, 175, 231, 624, 960
BspACI	CCGC	2 cut(s)	39, 599
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	5 cut(s)	145, 178, 185, 703, 732
BspFNI	CGCG	3 cut(s)	41, 76, 903
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	592
BssMI	GATC	5 cut(s)	59, 175, 231, 624, 960
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	131, 448
BstDEI	CTNAG	8 cut(s)	153, 165, 172, 220, 690, 740, 932, 957
BstF5I	GGATG	5 cut(s)	474, 498, 551, 720, 973
BstFNI	CGCG	3 cut(s)	41, 76, 903
BstHHI	GCGC	3 cut(s)	129, 437, 903
BstKTI	GATC	5 cut(s)	62, 178, 234, 627, 963
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	5 cut(s)	59, 175, 231, 624, 960
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 38, 135, 296, 443, 907
BstNSI	RCATGY	3 cut(s)	133, 537, 599
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	3 cut(s)	41, 76, 903
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	960
BstYI	RGATCY	1 cut(s)	960
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	5 cut(s)	474, 498, 551, 720, 973
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	131, 448
CfoI	GCGC	3 cut(s)	129, 437, 903
Cfr13I	GGNCC	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	169, 593
CviAII	CATG	6 cut(s)	34, 130, 534, 596, 680, 808
CviQI	GTAC	2 cut(s)	169, 593
DdeI	CTNAG	8 cut(s)	153, 165, 172, 220, 690, 740, 932, 957
DpnI	GATC	5 cut(s)	61, 177, 233, 626, 962
DpnII	GATC	5 cut(s)	59, 175, 231, 624, 960
EaeI	YGGCCR	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	48, 410
EcoRI	GAATTC	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	135
FaeI	CATG	6 cut(s)	37, 133, 537, 599, 683, 811
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	6 cut(s)	33, 129, 533, 595, 679, 807
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	5 cut(s)	481, 505, 538, 727, 980
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	1 cut(s)	794
GlaI	GCGC	3 cut(s)	128, 436, 902
GluI	GCNGC	1 cut(s)	518
GsuI	CTGGAG	2 cut(s)	867, 893
HaeIII	GGCC	1 cut(s)	450
HhaI	GCGC	3 cut(s)	129, 437, 903
Hin1II	CATG	6 cut(s)	37, 133, 537, 599, 683, 811
Hin6I	GCGC	3 cut(s)	127, 435, 901
HinP1I	GCGC	3 cut(s)	127, 435, 901
HincII	GTYRAC	1 cut(s)	578
HindII	GTYRAC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	4 cut(s)	71, 584, 878, 938
HphI	GGTGA	2 cut(s)	103, 203
Hpy166II	GTNNAC	2 cut(s)	578, 799
Hpy188I	TCNGA	6 cut(s)	59, 154, 175, 270, 556, 741
Hpy188III	TCNNGA	2 cut(s)	235, 542
Hpy8I	GTNNAC	2 cut(s)	578, 799
HpyAV	CCTTC	4 cut(s)	313, 349, 738, 820
HpyCH4V	TGCA	6 cut(s)	49, 133, 138, 307, 769, 775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 38, 135, 296, 443, 907
HpyF3I	CTNAG	8 cut(s)	153, 165, 172, 220, 690, 740, 932, 957
Hsp92II	CATG	6 cut(s)	37, 133, 537, 599, 683, 811
HspAI	GCGC	3 cut(s)	127, 435, 901
Kzo9I	GATC	5 cut(s)	59, 175, 231, 624, 960
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	147, 930
MaeI	CTAG	1 cut(s)	794
MaeIII	GTNAC	2 cut(s)	200, 212
MalI	GATC	5 cut(s)	61, 177, 233, 626, 962
MboI	GATC	5 cut(s)	59, 175, 231, 624, 960
MboII	GAAGA	3 cut(s)	206, 257, 386
MflI	RGATCY	1 cut(s)	960
MluCI	AATT	7 cut(s)	84, 101, 110, 271, 324, 613, 844
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	7 cut(s)	89, 220, 238, 628, 705, 868, 940
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	2 cut(s)	261, 395
MslI	CAYNNNNRTG	2 cut(s)	189, 556
MspA1I	CMGCKG	1 cut(s)	520
MvnI	CGCG	3 cut(s)	41, 76, 903
MwoI	GCNNNNNNNGC	6 cut(s)	10, 38, 135, 296, 443, 907
NdeII	GATC	5 cut(s)	59, 175, 231, 624, 960
NlaIII	CATG	6 cut(s)	37, 133, 537, 599, 683, 811
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	3 cut(s)	133, 537, 599
NspV	TTCGAA	1 cut(s)	788
OliI	CACNNNNGTG	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	133
PciI	ACATGT	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	71, 878, 938
PflMI	CCANNNNNTGG	2 cut(s)	489, 848
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PscI	ACATGT	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	261
PsiI	TTATAA	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	960
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	170, 594
RsaNI	GTAC	2 cut(s)	169, 593
RseI	CAYNNNNRTG	2 cut(s)	189, 556
SaqAI	TTAA	2 cut(s)	261, 395
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	5 cut(s)	59, 175, 231, 624, 960
Sau96I	GGNCC	1 cut(s)	480
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	578
SfaNI	GCATC	2 cut(s)	147, 930
SfcI	CTRYAG	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	189, 556
SpeI	ACTAGT	1 cut(s)	793
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	7 cut(s)	84, 101, 110, 271, 324, 613, 844
SsiI	CCGC	2 cut(s)	39, 599
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	1 cut(s)	794
TaqI	TCGA	3 cut(s)	329, 699, 788
TasI	AATT	7 cut(s)	84, 101, 110, 271, 324, 613, 844
TatI	WGTACW	2 cut(s)	168, 592
TfiI	GAWTC	3 cut(s)	71, 878, 938
Tru1I	TTAA	2 cut(s)	261, 395
Tru9I	TTAA	2 cut(s)	261, 395
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	123, 135, 485, 540
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	2 cut(s)	489, 848
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	5 cut(s)	84, 101, 110, 271, 324
XceI	RCATGY	3 cut(s)	133, 537, 599
XspI	CTAG	1 cut(s)	794
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.