Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Forward (+)

4293227 .. 4294128

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACAAATATTTACCCAGCCATGTTAAGCAGCGGGAAAGTGAAGGGAATTGAGAGCAGACCTATTGAGTTTGTTGAGAAGGTTTGGAGTTACATTGAAGAAGTGGTTATGTCTGTGTTAATGCATAATACAGAAAACTATTGTCAGCATCAGTCATGCATCAGAAGAGCTAGCCATAACCTCATAACAAGGATGAAAGAATGGTCAGTTAAGTGGATGAAGGAGACAGTGGAAATGGAGAGCCTGACTGATTATACATGTAATCCAGAATATGTATCTGAATGGACTAGGCTGATGGGTCAACAAGATTCATTTATGAACGCGCTGTTAACTGGAGAACACTCTACTATCCCTGTAGAAGGTATGGGGAAGGTTGCAGTTGGAGACCTTAGGCAGTATCCTGACTTGAAAATGAGGATGACTGCATATTGGAAAGTCGTGTTGAGAAGGCTTGTTGACTGTATGGCTTTACATTTGCAGTTGAATATTTCAAAACTTGTGAACAAAGACCTGGAGATTGAGTTTTTGGGACCAAATTGTGGTGGCGGGATTGAGAAAATGCTGCAGGAATCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

193

Amino Acids

22.17

Weight (kDa)

5.98

Isoelectric Point (pI)

66.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	12 - 98	2.2e-12	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	33, 546
AfiI	CCNNNNNNNGG	2 cut(s)	359, 539
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	98, 409, 484, 492
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	218, 378
ApeKI	GCWGC	2 cut(s)	30, 562
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	42, 549
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	218, 378
BfaI	CTAG	2 cut(s)	171, 288
BfmI	CTRYAG	2 cut(s)	354, 563
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	31, 563
BlsI	GCNGC	2 cut(s)	32, 564
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	157, 168
BmtI	GCTAGC	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	354, 533
BsaI	GGTCTC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 539
Bse1I	ACTGG	1 cut(s)	337
Bse21I	CCTNAGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	198, 222, 423
BseLI	CCNNNNNNNGG	2 cut(s)	359, 539
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	42, 549
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	359, 539
BsmAI	GTCTC	2 cut(s)	218, 378
BsmFI	GGGAC	1 cut(s)	543
Bso31I	GGTCTC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	33, 546
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	229, 461
Bst6I	CTCTTC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	389
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	198, 222, 423
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	325
BstMAI	GTCTC	2 cut(s)	218, 378
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	354, 563
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	42, 549
Bsu36I	CCTNAGG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	198, 222, 423
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	530
CviAII	CATG	3 cut(s)	22, 156, 258
CviJI	RGCY	7 cut(s)	20, 170, 174, 243, 292, 451, 467
CviKI_1	RGCY	7 cut(s)	20, 170, 174, 243, 292, 451, 467
DdeI	CTNAG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	389
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	2 cut(s)	126, 161
FaeI	CATG	3 cut(s)	25, 159, 261
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	3 cut(s)	21, 155, 257
FauI	CCCGC	2 cut(s)	26, 539
Fnu4HI	GCNGC	2 cut(s)	31, 563
FokI	GGATG	3 cut(s)	205, 229, 430
Fsp4HI	GCNGC	2 cut(s)	31, 563
FspBI	CTAG	2 cut(s)	171, 288
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	31, 563
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	2 cut(s)	354, 533
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	25, 159, 261
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	3 cut(s)	302, 330, 457
HindII	GTYRAC	3 cut(s)	302, 330, 457
HinfI	GANTC	2 cut(s)	308, 569
HpaI	GTTAAC	1 cut(s)	330
Hpy166II	GTNNAC	4 cut(s)	302, 330, 457, 502
Hpy188I	TCNGA	2 cut(s)	164, 280
Hpy188III	TCNNGA	2 cut(s)	266, 401
Hpy8I	GTNNAC	4 cut(s)	302, 330, 457, 502
HpyAV	CCTTC	6 cut(s)	37, 73, 214, 353, 364, 441
HpyCH4III	ACNGT	2 cut(s)	229, 461
HpyCH4V	TGCA	6 cut(s)	124, 159, 377, 425, 478, 565
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	25, 159, 261
HspAI	GCGC	1 cut(s)	323
KspAI	GTTAAC	1 cut(s)	330
LguI	GCTCTTC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	30, 257, 279, 318, 366, 414, 497, 524, 551
Lsp1109I	GCAGC	2 cut(s)	42, 549
LweI	GCATC	2 cut(s)	157, 168
MaeI	CTAG	2 cut(s)	171, 288
MaeIII	GTNAC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	110, 177
MluCI	AATT	2 cut(s)	48, 535
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	2 cut(s)	191, 408
Mph1103I	ATGCAT	2 cut(s)	126, 161
MseI	TTAA	4 cut(s)	26, 119, 210, 329
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	323
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	25, 159, 261
NlaIV	GGNNCC	1 cut(s)	531
NsiI	ATGCAT	2 cut(s)	126, 161
NspI	RCATGY	1 cut(s)	261
PciI	ACATGT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	308, 569
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	32, 564
PscI	ACATGT	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	4 cut(s)	26, 119, 210, 329
SatI	GCNGC	2 cut(s)	31, 563
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	512
SetI	ASST	8 cut(s)	64, 84, 172, 183, 364, 375, 390, 513
SfaNI	GCATC	2 cut(s)	157, 168
SfcI	CTRYAG	2 cut(s)	354, 563
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	48, 535
SsiI	CCGC	2 cut(s)	33, 546
SspI	AATATT	2 cut(s)	10, 487
SspMI	CTAG	2 cut(s)	171, 288
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	229, 461
TasI	AATT	2 cut(s)	48, 535
TfiI	GAWTC	2 cut(s)	308, 569
Tru1I	TTAA	4 cut(s)	26, 119, 210, 329
Tru9I	TTAA	4 cut(s)	26, 119, 210, 329
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	30, 562
TspDTI	ATGAA	4 cut(s)	209, 233, 300, 332
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	357
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	2 cut(s)	171, 288
Zsp2I	ATGCAT	2 cut(s)	126, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.