Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

10332984 .. 10333682

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATATGATGGGGGTGAACAACCGGAGCCCGAAGCAGAGCAAGAGAAGCAGATCGTCAAAGGGGGTGAAGGTGGTGTACATATCGAGCCCCATGAAGGTTCAAACCAGTGCCTCTAAGTTCAGGGCGCTTGTGCAGGAGCTCACCGGCCGAGACTCCGACGCCGAGCGGTTCATGGAGACCAACGGTGGTGGTGGTCACCGTCATCAGAATATTCCTGAGTTTTCTCATGAGCAGCAACTCAAGGCCGCTGATGTTGACCATCATGTATTCCCTCACCATCAGATTCCTTTCTCGAATTCGATTTATGAGTTTCCGAATTTCTCCGACTCTTTGTTTGAACCGTTTACTGGGCATTTTGAGCTCGATGTGCTCAGAAGCTTTGATCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

131

Amino Acids

14.95

Weight (kDa)

6.7

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	28 - 54	9e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	2 cut(s)	169, 249
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	298, 319
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	97, 350
AgsI	TTSAA	2 cut(s)	104, 341
AluBI	AGCT	3 cut(s)	142, 364, 381
AluI	AGCT	3 cut(s)	142, 364, 381
Alw21I	GWGCWC	3 cut(s)	144, 366, 375
Alw26I	GTCTC	2 cut(s)	147, 173
AoxI	GGCC	2 cut(s)	148, 246
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	2 cut(s)	298, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	5 cut(s)	28, 79, 136, 191, 269
BanII	GRGCYC	4 cut(s)	32, 92, 144, 366
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
Bbv12I	GWGCWC	3 cut(s)	144, 366, 375
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	4, 270, 288
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	147, 173
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	2 cut(s)	236, 249
BlsI	GCNGC	2 cut(s)	237, 250
BmiI	GGNNCC	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 350
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	108, 355
BseLI	CCNNNNNNNGG	2 cut(s)	97, 350
BseMII	CTCAG	2 cut(s)	210, 388
BseNI	ACTGG	2 cut(s)	108, 355
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	150, 248
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	3 cut(s)	144, 366, 375
BsiSI	CCGG	2 cut(s)	25, 147
BslI	CCNNNNNNNGG	2 cut(s)	97, 350
BsmAI	GTCTC	2 cut(s)	147, 173
BsnI	GGCC	2 cut(s)	150, 248
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	53, 385
BspACI	CCGC	2 cut(s)	169, 249
BspANI	GGCC	2 cut(s)	150, 248
BspCNI	CTCAG	2 cut(s)	211, 387
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	108, 355
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	2 cut(s)	53, 385
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	188, 203, 345
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	117, 219, 374
BstEII	GGTNACC	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	56, 388
BstMAI	GTCTC	2 cut(s)	147, 173
BstMBI	GATC	2 cut(s)	53, 385
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 361, 370
BstPI	GGTNACC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	150, 248
BtsIMutI	CAGTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	146
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	4 cut(s)	94, 175, 230, 266
CviJI	RGCY	7 cut(s)	30, 90, 142, 150, 248, 364, 381
CviKI_1	RGCY	7 cut(s)	30, 90, 142, 150, 248, 364, 381
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	117, 219, 374
DpnI	GATC	2 cut(s)	55, 387
DpnII	GATC	2 cut(s)	53, 385
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Ecl136II	GAGCTC	2 cut(s)	142, 364
EclXI	CGGCCG	1 cut(s)	148
Eco24I	GRGCYC	4 cut(s)	32, 92, 144, 366
Eco31I	GGTCTC	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	148
Eco53kI	GAGCTC	2 cut(s)	142, 364
Eco91I	GGTNACC	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	142, 364
EcoO65I	GGTNACC	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	298
EcoT38I	GRGCYC	4 cut(s)	32, 92, 144, 366
FaeI	CATG	4 cut(s)	97, 178, 233, 269
FaiI	YATR	8 cut(s)	8, 83, 95, 176, 231, 267, 309, 394
FatI	CATG	4 cut(s)	93, 174, 229, 265
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	236, 249
FriOI	GRGCYC	4 cut(s)	32, 92, 144, 366
Fsp4HI	GCNGC	2 cut(s)	236, 249
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	236, 249
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	150, 248
HapII	CCGG	2 cut(s)	25, 147
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	97, 178, 233, 269
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	155, 286, 329
HpaII	CCGG	2 cut(s)	25, 147
HphI	GGTGA	5 cut(s)	28, 79, 136, 191, 269
Hpy166II	GTNNAC	4 cut(s)	19, 79, 259, 348
Hpy188I	TCNGA	6 cut(s)	160, 210, 285, 318, 328, 377
Hpy188III	TCNNGA	3 cut(s)	218, 230, 295
Hpy8I	GTNNAC	4 cut(s)	19, 79, 259, 348
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	64, 91
HpyCH4III	ACNGT	3 cut(s)	188, 203, 345
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 361, 370
HpyF3I	CTNAG	3 cut(s)	117, 219, 374
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	97, 178, 233, 269
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	53, 385
LmnI	GCTCC	2 cut(s)	27, 139
LpnPI	CCDG	7 cut(s)	38, 109, 121, 122, 160, 231, 336
Lsp1109I	GCAGC	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	55, 387
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	2 cut(s)	53, 385
MhlI	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
MluCI	AATT	2 cut(s)	298, 319
MlyI	GAGTC	2 cut(s)	149, 323
MmeI	TCCRAC	2 cut(s)	183, 351
MnlI	CCTC	2 cut(s)	124, 285
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	25, 147
MwoI	GCNNNNNNNGC	3 cut(s)	48, 361, 370
NdeII	GATC	2 cut(s)	53, 385
NlaIII	CATG	4 cut(s)	97, 178, 233, 269
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	2 cut(s)	176, 190
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	237, 250
PleI	GAGTC	2 cut(s)	149, 323
PpsI	GAGTC	2 cut(s)	149, 323
Psp124BI	GAGCTC	2 cut(s)	144, 366
PspEI	GGTNACC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	2 cut(s)	144, 366
SatI	GCNGC	2 cut(s)	236, 249
Sau3AI	GATC	2 cut(s)	53, 385
SchI	GAGTC	2 cut(s)	149, 323
SduI	GDGCHC	5 cut(s)	32, 92, 144, 366, 375
SetI	ASST	5 cut(s)	75, 102, 144, 366, 383
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	298, 319
SsiI	CCGC	2 cut(s)	169, 249
SspI	AATATT	1 cut(s)	214
SstI	GAGCTC	2 cut(s)	144, 366
TaaI	ACNGT	3 cut(s)	188, 203, 345
TaqI	TCGA	4 cut(s)	86, 296, 302, 366
TasI	AATT	2 cut(s)	298, 319
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	110, 163
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	298, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.