MD02G1282900.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000365
Physical Location & Seq
Reverse (-)
33897629 .. 33899707
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1282900.v1.1.491

Sequence Viewer

Length: 2034 bp
ATGGAAGGAAATAGGAAGCAAACAAAACTTGGTTCGAAAACCACCACCTCATCATCTTCATCAACCACAACCACTTTCAAAGATGAAGGTTCATCAGCAGCACTCGTTGTTGGAGCAGAACATGCTGTACCGCTCAACGTCGTTGAGTACGCGCCTATCGTGTCATCCTACAACGACAAAATCCGTCCGCTGCTCGATGCAGTTGACAAGCTGCGTAACCTCATGGTTATGGAGGAAGGTATACAGCTCCCCACCATTGTTGTCGTCGGAGACCAGTCGTCCGGCAAATCTAGCGTCCTCGAGTCCCTCGCCGGCATCAGCCTGCCACGTGGACACGGTATCTGCACCAGGGTGCCTCTCGTAATGAGGCTTCAACACCATTCCAGTCATGAACCGGAGCTCTCCTTGCAGTACAATGGCAGAGTGGAGCACACTGACGAGGACAACATTTCTGAAGACATTGTCAATGCTACTAATTTGATTGCTGGTGAAGGTAAGGGTATTTCAGATACCCCATTGACTTTGCTTGTGAAAAAGAAGGGCGTGCCTGATTTGACCATGGTTGATCTCCCTGGAATCACTAGGGTTCCAATCAATGGCCAGCCTGAAGATATTTGTGATCAAATTAAAAATATGATCAACGAGTATATAAAACAAGAAGAGTGCATCATACTAAATGTGTTGTCTGCTACTGTTGATTTTCCTACTTGTGAGTCGATTCAGATGTCACAGACTGCTGATAAAACCGGTGAGAGGACTCTTGCTGTGGTCACCAAGGTTGATAAAGCACCAGAAGGGTTACTTGAGAAGGTTACAGCTGATGATGTCAACATTGGTCTAGGTTATGTCTGCGTGCGGAACCGGATTGGAGATGAAACGTACGAGGAGGCAAGGGCAAATGCCGACAAACTGTTTCGAACTCATCCTCTTCTTTCAAAGATTGATAAGTCTATGGTGGGAATTCATGTTTTGGCTGACAAGTTGGTGCAAATTCAAGCTGCTAGCATAGCCAGGAACTTGCCGGATATCGTTAAGAAGATCAATGACAAGCTCAACTCTTGCATTTCAGAGCTCAAGAAAATGCCAAAGAGTCTATCCTCCGATGCTGAGGCTATCACTGCTTTCATGCAAATCATTGGAGTATCCAAAGAATCCCTCAGGAAAATTCTTGTGAGAGGAGAATTTGACGAATACCCGGGTGACAAGCGCATGCATTGCACCGCTAGGCTGGTTGAGATGCTCAATCAGTACTCGGATGAACTTCTTAAGTGCAATGAAAGTGACCCAACAGTTAATTTCTTGACTGAGGAGATTAGGATTTTGGAGGAAGCTAAAGGTATCACTCTTCCTAATTTTCTTCCGCGCAACGCTTTTCTTTCCATTTTGCAGGGAAAAGTGGGAGGGATTTCAGATATACCCATCAGGTTTGTTGAGCAGGTGTGGAGTTATATTGAGGATGTGGTTCTTGCTGTGCTAATGCATAATACACAAGACTATTATCATCTCCATTTGGCCACCAGAAGAGCTGGCCATAATCTCATAGCAAAGATGAAAGAAAAGTCAATCCACTGGATCTTGGAGATTGTGGAAATGGAGAAACACACTGATTACACTTGTAATCCTGAATATGCAGCTGAATGTAGTAGGCTTATGACCAAGCAGAATGCCTTCCTAGATGGTTTGAACGACGAGAAACGTCCTTCCAAGATAGTTATAGAGGGTATTGGGGAGGTTGAAGTTGAAGGCCTGAGGAAGTATAAACGTGTTGATCTATCTCAGGCTTACGACTTGAAAATGCGGATGACTGCCTATTGGAAGTTGAACGTTGCTAACCTTGTGAACAAGGACATGGAGATGGAGATTGTGGGAGAGCTAGTCGGACCTAATCACGGCTGTGGGATTGAAAAGATGCTGGAGGAATCTCCATCAACTGCAGTCAAGCGTGAGAAGCTCAACAAGAGCATCAAAAAGCTCAAGGATTCGAAAGAGGTGGTTGGTAAGATCATGGATGGCGTTATAACTTATGCTGGTTAA

Protein Analysis

678

Amino Acids

75.18

Weight (kDa)

5.72

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 86 - 260 1.6e-41 Dynamin family
Dynamin_M PF01031 267 - 549 5.1e-62 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2018
AarI CACCTGC 1 cut(s) 1426
Acc36I ACCTGC 1 cut(s) 1426
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 241
AccII CGCG 2 cut(s) 152, 1363
AciI CCGC 6 cut(s) 131, 188, 856, 1221, 1361, 1798
AclI AACGTT 1 cut(s) 1824
AclWI GGATC 1 cut(s) 1580
AcoI YGGCCR 3 cut(s) 598, 1512, 1528
AcsI RAATTY 4 cut(s) 960, 990, 1164, 1181
AcuI CTGAAG 2 cut(s) 474, 627
AcvI CACGTG 1 cut(s) 329
AfaI GTAC 5 cut(s) 129, 149, 413, 881, 1250
AfiI CCNNNNNNNGG 3 cut(s) 596, 753, 1889
AflII CTTAAG 1 cut(s) 1265
AflIII ACRYGT 1 cut(s) 1762
AgeI ACCGGT 1 cut(s) 746
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 3 cut(s) 347, 571, 1010
AleI CACNNNNGTG 2 cut(s) 350, 1893
Alw21I GWGCWC 3 cut(s) 402, 432, 1074
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 1580
Ama87I CYCGRG 2 cut(s) 299, 1195
AoxI GGCC 4 cut(s) 598, 1512, 1528, 1744
ApeKI GCWGC 5 cut(s) 98, 190, 211, 998, 1631
ApoI RAATTY 4 cut(s) 960, 990, 1164, 1181
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsiGI ACCGGT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 1667
AspLEI GCGC 3 cut(s) 154, 1209, 1365
AspS9I GGNCC 1 cut(s) 1880
AsuC2I CCSGG 2 cut(s) 1196, 1197
AsuHPI GGTGA 4 cut(s) 500, 761, 763, 1211
AsuII TTCGAA 3 cut(s) 35, 916, 1982
AsuNHI GCTAGC 1 cut(s) 1001
AvaI CYCGRG 2 cut(s) 299, 1195
AvaII GGWCC 1 cut(s) 1880
AxyI CCTNAGG 2 cut(s) 1157, 1748
BalI TGGCCA 3 cut(s) 600, 1514, 1530
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 402, 1074
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 3 cut(s) 402, 432, 1074
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 5 cut(s) 110, 177, 198, 985, 1643
BccI CCATC 5 cut(s) 1427, 1670, 1849, 1933, 2003
BceAI ACGGC 1 cut(s) 1906
BciT130I CCWGG 3 cut(s) 349, 573, 1012
BciVI GTATCC 1 cut(s) 1153
BclI TGATCA 2 cut(s) 619, 636
BcnI CCSGG 2 cut(s) 1196, 1197
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 7 cut(s) 291, 582, 839, 1002, 1224, 1673, 1874
BfmI CTRYAG 1 cut(s) 1932
BfrI CTTAAG 1 cut(s) 1265
BfuAI ACCTGC 1 cut(s) 1426
BfuI GTATCC 1 cut(s) 1153
BisI GCNGC 5 cut(s) 99, 191, 212, 999, 1632
BlsI GCNGC 5 cut(s) 100, 192, 213, 1000, 1633
BmcAI AGTACT 1 cut(s) 1250
Bme1390I CCNGG 5 cut(s) 349, 573, 1012, 1196, 1197
Bme18I GGWCC 1 cut(s) 1880
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 299, 1195
BmgT120I GGNCC 1 cut(s) 1880
BmiI GGNNCC 3 cut(s) 354, 588, 860
BmrFI CCNGG 5 cut(s) 349, 573, 1012, 1196, 1197
BmsI GCATC 7 cut(s) 187, 324, 675, 1093, 1227, 1899, 1971
BmtI GCTAGC 1 cut(s) 1005
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 1934
Bpu10I CCTNAGC 1 cut(s) 1107
Bpu14I TTCGAA 3 cut(s) 35, 916, 1982
BpuEI CTTGAG 3 cut(s) 824, 1058, 1958
BpuMI CCSGG 2 cut(s) 1196, 1197
BsaAI YACGTR 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 5 cut(s) 348, 558, 571, 774, 1195
BsaWI WCCGGW 3 cut(s) 394, 746, 861
BsaXI ACNNNNNCTCC 2 cut(s) 1860, 1890
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 753, 1889
Bse118I RCCGGY 2 cut(s) 311, 746
Bse1I ACTGG 3 cut(s) 274, 384, 1574
Bse21I CCTNAGG 2 cut(s) 1157, 1748
Bse3DI GCAATG 2 cut(s) 1213, 1279
BseBI CCWGG 3 cut(s) 349, 573, 1012
BseDI CCNNGG 5 cut(s) 348, 558, 571, 774, 1195
BseGI GGATG 6 cut(s) 164, 922, 1261, 1462, 1806, 2014
BseLI CCNNNNNNNGG 3 cut(s) 596, 753, 1889
BseMI GCAATG 2 cut(s) 1213, 1279
BseMII CTCAG 5 cut(s) 1098, 1171, 1296, 1739, 1790
BseNI ACTGG 3 cut(s) 274, 384, 1574
BseRI GAGGAG 3 cut(s) 899, 1191, 1322
BseXI GCAGC 5 cut(s) 110, 177, 198, 985, 1643
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 152, 1363
BshFI GGCC 4 cut(s) 600, 1514, 1530, 1746
BshNI GGYRCC 1 cut(s) 352
BshTI ACCGGT 1 cut(s) 746
BsiHKAI GWGCWC 3 cut(s) 402, 432, 1074
BsiHKCI CYCGRG 2 cut(s) 299, 1195
BsiSI CCGG 7 cut(s) 282, 312, 395, 747, 862, 1022, 1196
BsiWI CGTACG 1 cut(s) 879
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 596, 753, 1889
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 1669
BsnI GGCC 4 cut(s) 600, 1514, 1530, 1746
Bso31I GGTCTC 1 cut(s) 264
BsoBI CYCGRG 2 cut(s) 299, 1195
Bsp119I TTCGAA 3 cut(s) 35, 916, 1982
Bsp1286I GDGCHC 3 cut(s) 402, 432, 1074
Bsp143I GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 6 cut(s) 131, 188, 856, 1221, 1361, 1798
BspANI GGCC 4 cut(s) 600, 1514, 1530, 1746
BspCNI CTCAG 5 cut(s) 1099, 1170, 1297, 1740, 1789
BspFNI CGCG 2 cut(s) 152, 1363
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 354, 588, 860
BspMAI CTGCAG 1 cut(s) 1936
BspMI ACCTGC 1 cut(s) 1426
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 1 cut(s) 1580
BspQI GCTCTTC 1 cut(s) 1516
BspT104I TTCGAA 3 cut(s) 35, 916, 1982
BspT107I GGYRCC 1 cut(s) 352
BspTI CTTAAG 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 264
BsrBI CCGCTC 1 cut(s) 133
BsrDI GCAATG 2 cut(s) 1213, 1279
BsrFI RCCGGY 2 cut(s) 311, 746
BsrI ACTGG 3 cut(s) 274, 384, 1574
BssAI RCCGGY 2 cut(s) 311, 746
BssECI CCNNGG 5 cut(s) 348, 558, 571, 774, 1195
BssMI GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
BssNAI GTATAC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 558, 774
Bst1107I GTATAC 1 cut(s) 242
Bst2UI CCWGG 3 cut(s) 349, 573, 1012
Bst4CI ACNGT 4 cut(s) 338, 694, 912, 1291
Bst6I CTCTTC 4 cut(s) 654, 933, 1350, 1516
BstAFI CTTAAG 1 cut(s) 1265
BstAPI GCANNNNNTGC 2 cut(s) 122, 1215
BstBAI YACGTR 1 cut(s) 329
BstBI TTCGAA 3 cut(s) 35, 916, 1982
BstC8I GCNNGC 8 cut(s) 313, 323, 545, 602, 854, 1003, 1211, 1528
BstDEI CTNAG 5 cut(s) 1107, 1157, 1305, 1748, 1776
BstDSI CCRYGG 1 cut(s) 558
BstEII GGTNACC 1 cut(s) 769
BstF5I GGATG 6 cut(s) 164, 922, 1261, 1462, 1806, 2014
BstFNI CGCG 2 cut(s) 152, 1363
BstHHI GCGC 3 cut(s) 154, 1209, 1365
BstKTI GATC 7 cut(s) 568, 622, 639, 1041, 1575, 1771, 2004
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
BstMWI GCNNNNNNNGC 7 cut(s) 122, 291, 406, 1007, 1118, 1215, 1948
BstNI CCWGG 3 cut(s) 349, 573, 1012
BstNSI RCATGY 2 cut(s) 125, 1213
BstPI GGTNACC 1 cut(s) 769
BstSCI CCNGG 5 cut(s) 347, 571, 1010, 1194, 1195
BstSFI CTRYAG 1 cut(s) 1932
BstUI CGCG 2 cut(s) 152, 1363
BstV1I GCAGC 5 cut(s) 110, 177, 198, 985, 1643
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 1572
BstYI RGATCY 1 cut(s) 1572
BstZ17I GTATAC 1 cut(s) 242
Bsu36I CCTNAGG 2 cut(s) 1157, 1748
BsuI GTATCC 1 cut(s) 1153
BsuRI GGCC 4 cut(s) 600, 1514, 1530, 1746
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 6 cut(s) 164, 922, 1261, 1462, 1806, 2014
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 4 cut(s) 432, 1116, 1567, 1602
BveI ACCTGC 1 cut(s) 1426
Cac8I GCNNGC 8 cut(s) 313, 323, 545, 602, 854, 1003, 1211, 1528
CciI TCATGA 1 cut(s) 388
CfoI GCGC 3 cut(s) 154, 1209, 1365
Cfr10I RCCGGY 2 cut(s) 311, 746
Cfr13I GGNCC 1 cut(s) 1880
Cfr9I CCCGGG 1 cut(s) 1195
CseI GACGC 1 cut(s) 283
Csp6I GTAC 5 cut(s) 128, 148, 412, 880, 1249
CspAI ACCGGT 1 cut(s) 746
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 9 cut(s) 122, 223, 389, 559, 965, 1126, 1210, 1849, 2005
CviQI GTAC 5 cut(s) 128, 148, 412, 880, 1249
DdeI CTNAG 5 cut(s) 1107, 1157, 1305, 1748, 1776
DpnI GATC 7 cut(s) 567, 621, 638, 1040, 1574, 1770, 2003
DpnII GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
DriI GACNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 3 cut(s) 598, 1512, 1528
Eam1104I CTCTTC 4 cut(s) 654, 933, 1350, 1516
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 4 cut(s) 654, 933, 1350, 1516
Ecl136II GAGCTC 2 cut(s) 400, 1072
Eco130I CCWWGG 2 cut(s) 558, 774
Eco147I AGGCCT 1 cut(s) 1746
Eco24I GRGCYC 2 cut(s) 402, 1074
Eco31I GGTCTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 1880
Eco53kI GAGCTC 2 cut(s) 400, 1072
Eco57I CTGAAG 2 cut(s) 474, 627
Eco72I CACGTG 1 cut(s) 329
Eco81I CCTNAGG 2 cut(s) 1157, 1748
Eco88I CYCGRG 2 cut(s) 299, 1195
Eco91I GGTNACC 1 cut(s) 769
EcoICRI GAGCTC 2 cut(s) 400, 1072
EcoO65I GGTNACC 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 960
EcoRII CCWGG 3 cut(s) 347, 571, 1010
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 2 cut(s) 558, 774
EcoT22I ATGCAT 2 cut(s) 1215, 1482
EcoT38I GRGCYC 2 cut(s) 402, 1074
ErhI CCWWGG 2 cut(s) 558, 774
FaeI CATG 9 cut(s) 125, 226, 392, 562, 968, 1129, 1213, 1852, 2008
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 1 cut(s) 289
FatI CATG 9 cut(s) 121, 222, 388, 558, 964, 1125, 1209, 1848, 2004
FbaI TGATCA 2 cut(s) 619, 636
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 99, 191, 212, 999, 1632
FokI GGATG 6 cut(s) 151, 909, 1268, 1469, 1813, 2021
FriOI GRGCYC 2 cut(s) 402, 1074
Fsp4HI GCNGC 5 cut(s) 99, 191, 212, 999, 1632
FspBI CTAG 7 cut(s) 291, 582, 839, 1002, 1224, 1673, 1874
GlaI GCGC 3 cut(s) 153, 1208, 1364
GluI GCNGC 5 cut(s) 99, 191, 212, 999, 1632
GsuI CTGGAG 1 cut(s) 1934
HaeIII GGCC 4 cut(s) 600, 1514, 1530, 1746
HapII CCGG 7 cut(s) 282, 312, 395, 747, 862, 1022, 1196
HgaI GACGC 1 cut(s) 283
HhaI GCGC 3 cut(s) 154, 1209, 1365
Hin1II CATG 9 cut(s) 125, 226, 392, 562, 968, 1129, 1213, 1852, 2008
Hin6I GCGC 3 cut(s) 152, 1207, 1363
HinP1I GCGC 3 cut(s) 152, 1207, 1363
HincII GTYRAC 2 cut(s) 205, 829
HindII GTYRAC 2 cut(s) 205, 829
HinfI GANTC 9 cut(s) 302, 576, 713, 718, 757, 1090, 1151, 1919, 1979
HpaII CCGG 7 cut(s) 282, 312, 395, 747, 862, 1022, 1196
HphI GGTGA 4 cut(s) 500, 761, 763, 1211
Hpy166II GTNNAC 5 cut(s) 205, 242, 332, 829, 1840
Hpy188I TCNGA 9 cut(s) 269, 454, 508, 723, 1069, 1102, 1255, 1411, 1880
Hpy188III TCNNGA 5 cut(s) 389, 1075, 1159, 1300, 1622
Hpy8I GTNNAC 5 cut(s) 205, 242, 332, 829, 1840
Hpy99I CGWCG 3 cut(s) 143, 269, 1691
HpyAV CCTTC 9 cut(s) 80, 230, 485, 532, 788, 802, 1678, 1710, 1736
HpyCH4III ACNGT 4 cut(s) 338, 694, 912, 1291
HpyCH4IV ACGT 6 cut(s) 138, 328, 878, 1696, 1762, 1824
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 291, 406, 1007, 1118, 1215, 1948
HpyF3I CTNAG 5 cut(s) 1107, 1157, 1305, 1748, 1776
HpySE526I ACGT 6 cut(s) 138, 328, 878, 1696, 1762, 1824
Hsp92II CATG 9 cut(s) 125, 226, 392, 562, 968, 1129, 1213, 1852, 2008
HspAI GCGC 3 cut(s) 152, 1207, 1363
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Ksp22I TGATCA 2 cut(s) 619, 636
Kzo9I GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
LguI GCTCTTC 1 cut(s) 1516
LmnI GCTCC 4 cut(s) 113, 252, 397, 427
Lsp1109I GCAGC 5 cut(s) 110, 177, 198, 985, 1643
LweI GCATC 7 cut(s) 187, 324, 675, 1093, 1227, 1899, 1971
MaeI CTAG 7 cut(s) 291, 582, 839, 1002, 1224, 1673, 1874
MaeII ACGT 6 cut(s) 138, 328, 878, 1696, 1762, 1824
MaeIII GTNAC 7 cut(s) 215, 726, 769, 798, 811, 1199, 1280
MalI GATC 7 cut(s) 567, 621, 638, 1040, 1574, 1770, 2003
MbiI CCGCTC 1 cut(s) 133
MboI GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
MboII GAAGA 9 cut(s) 48, 467, 620, 671, 920, 1048, 1337, 1349, 1533
MflI RGATCY 1 cut(s) 1572
MhlI GDGCHC 3 cut(s) 402, 432, 1074
MlsI TGGCCA 3 cut(s) 600, 1514, 1530
MluCI AATT 8 cut(s) 475, 624, 960, 990, 1164, 1181, 1294, 1351
MluNI TGGCCA 3 cut(s) 600, 1514, 1530
MlyI GAGTC 4 cut(s) 311, 722, 751, 1099
MmeI TCCRAC 3 cut(s) 91, 247, 1858
Mox20I TGGCCA 3 cut(s) 600, 1514, 1530
Mph1103I ATGCAT 2 cut(s) 1215, 1482
MroNI GCCGGC 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 1667
MscI TGGCCA 3 cut(s) 600, 1514, 1530
MseI TTAA 5 cut(s) 627, 1032, 1266, 1293, 2032
MslI CAYNNNNRTG 4 cut(s) 227, 350, 1853, 1893
Msp20I TGGCCA 3 cut(s) 600, 1514, 1530
MspA1I CMGCKG 3 cut(s) 190, 818, 1634
MspCI CTTAAG 1 cut(s) 1265
MspI CCGG 7 cut(s) 282, 312, 395, 747, 862, 1022, 1196
MspR9I CCNGG 5 cut(s) 349, 573, 1012, 1196, 1197
Mva1269I GAATGC 1 cut(s) 1669
MvaI CCWGG 3 cut(s) 349, 573, 1012
MvnI CGCG 2 cut(s) 152, 1363
MwoI GCNNNNNNNGC 7 cut(s) 122, 291, 406, 1007, 1118, 1215, 1948
NaeI GCCGGC 1 cut(s) 313
NciI CCSGG 2 cut(s) 1196, 1197
NcoI CCATGG 1 cut(s) 558
NdeII GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
NgoMIV GCCGGC 1 cut(s) 311
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 9 cut(s) 125, 226, 392, 562, 968, 1129, 1213, 1852, 2008
NlaIV GGNNCC 3 cut(s) 354, 588, 860
NmuCI GTSAC 4 cut(s) 726, 769, 1199, 1280
NsiI ATGCAT 2 cut(s) 1215, 1482
NspI RCATGY 2 cut(s) 125, 1213
NspV TTCGAA 3 cut(s) 35, 916, 1982
OliI CACNNNNGTG 2 cut(s) 350, 1893
PaeI GCATGC 1 cut(s) 1213
PaeR7I CTCGAG 1 cut(s) 299
PagI TCATGA 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 1426
PceI AGGCCT 1 cut(s) 1746
PciSI GCTCTTC 1 cut(s) 1516
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 1669
PdiI GCCGGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 1667
PfeI GAWTC 5 cut(s) 576, 718, 1151, 1919, 1979
Pfl23II CGTACG 1 cut(s) 879
PflFI GACNNNGTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 5 cut(s) 100, 192, 213, 1000, 1633
PleI GAGTC 4 cut(s) 310, 721, 751, 1098
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 4 cut(s) 310, 721, 751, 1098
Ppu21I YACGTR 1 cut(s) 329
PsiI TTATAA 1 cut(s) 2018
Psp124BI GAGCTC 2 cut(s) 402, 1074
Psp1406I AACGTT 1 cut(s) 1824
Psp6I CCWGG 3 cut(s) 347, 571, 1010
PspCI CACGTG 1 cut(s) 329
PspEI GGTNACC 1 cut(s) 769
PspGI CCWGG 3 cut(s) 347, 571, 1010
PspLI CGTACG 1 cut(s) 879
PspN4I GGNNCC 3 cut(s) 354, 588, 860
PspPI GGNCC 1 cut(s) 1880
PspXI VCTCGAGB 1 cut(s) 299
PsrI GAACNNNNNNTAC 2 cut(s) 111, 143
PstI CTGCAG 1 cut(s) 1936
PsuI RGATCY 1 cut(s) 1572
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 2 cut(s) 818, 1634
RsaI GTAC 5 cut(s) 129, 149, 413, 881, 1250
RsaNI GTAC 5 cut(s) 128, 148, 412, 880, 1249
RseI CAYNNNNRTG 4 cut(s) 227, 350, 1853, 1893
SacI GAGCTC 2 cut(s) 402, 1074
SapI GCTCTTC 1 cut(s) 1516
SaqAI TTAA 5 cut(s) 627, 1032, 1266, 1293, 2032
SatI GCNGC 5 cut(s) 99, 191, 212, 999, 1632
Sau3AI GATC 7 cut(s) 565, 619, 636, 1038, 1572, 1768, 2001
Sau96I GGNCC 1 cut(s) 1880
ScaI AGTACT 1 cut(s) 1250
SchI GAGTC 4 cut(s) 311, 722, 751, 1099
ScrFI CCNGG 5 cut(s) 349, 573, 1012, 1196, 1197
SduI GDGCHC 3 cut(s) 402, 432, 1074
SfaNI GCATC 7 cut(s) 187, 324, 675, 1093, 1227, 1899, 1971
SfcI CTRYAG 1 cut(s) 1932
Sfr274I CTCGAG 1 cut(s) 299
SfuI TTCGAA 3 cut(s) 35, 916, 1982
SinI GGWCC 1 cut(s) 1880
SlaI CTCGAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 1197
SmiMI CAYNNNNRTG 4 cut(s) 227, 350, 1853, 1893
SmlI CTYRAG 5 cut(s) 299, 803, 1073, 1265, 1973
SmoI CTYRAG 5 cut(s) 299, 803, 1073, 1265, 1973
SphI GCATGC 1 cut(s) 1213
Sse9I AATT 8 cut(s) 475, 624, 960, 990, 1164, 1181, 1294, 1351
SseBI AGGCCT 1 cut(s) 1746
SsiI CCGC 6 cut(s) 131, 188, 856, 1221, 1361, 1798
SspMI CTAG 7 cut(s) 291, 582, 839, 1002, 1224, 1673, 1874
SstI GAGCTC 2 cut(s) 402, 1074
StuI AGGCCT 1 cut(s) 1746
StyD4I CCNGG 5 cut(s) 347, 571, 1010, 1194, 1195
StyI CCWWGG 2 cut(s) 558, 774
TaaI ACNGT 4 cut(s) 338, 694, 912, 1291
TaiI ACGT 6 cut(s) 141, 331, 881, 1699, 1765, 1827
TaqI TCGA 6 cut(s) 35, 195, 300, 716, 916, 1982
TasI AATT 8 cut(s) 475, 624, 960, 990, 1164, 1181, 1294, 1351
TatI WGTACW 2 cut(s) 411, 1248
TfiI GAWTC 5 cut(s) 576, 718, 1151, 1919, 1979
Tru1I TTAA 5 cut(s) 627, 1032, 1266, 1293, 2032
Tru9I TTAA 5 cut(s) 627, 1032, 1266, 1293, 2032
TscAI CASTG 4 cut(s) 439, 1123, 1574, 1609
TseFI GTSAC 4 cut(s) 726, 769, 1199, 1280
TseI GCWGC 5 cut(s) 98, 190, 211, 998, 1631
Tsp45I GTSAC 4 cut(s) 726, 769, 1199, 1280
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 1195
TspRI CASTG 4 cut(s) 439, 1123, 1574, 1609
Tth111I GACNNNGTC 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 596
Vha464I CTTAAG 1 cut(s) 1265
VpaK11BI GGWCC 1 cut(s) 1880
XapI RAATTY 4 cut(s) 960, 990, 1164, 1181
XceI RCATGY 2 cut(s) 125, 1213
XhoI CTCGAG 1 cut(s) 299
XmaI CCCGGG 1 cut(s) 1195
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 1667
XspI CTAG 7 cut(s) 291, 582, 839, 1002, 1224, 1673, 1874
ZrmI AGTACT 1 cut(s) 1250
Zsp2I ATGCAT 2 cut(s) 1215, 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.