pycom02g24110
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
22222736 .. 22223404
669 bp
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UTR
Exon/CDS
Intron
pycom02g24110.3

Sequence Viewer

Length: 519 bp
ATGACGATTTTGGAGGAAGCTAAAGGGATTTCAGATATACCCATCAGGTTTGTTGAGCAGGTGTGGAGTTATATTGAGGATGTGGTTCTATCTGTGCTAATGCGTAACACGCAAGACTATTATCATCTTCAAAATGTCATTGAACTGGATCTTGGAGATGTGGAAATGGAGAAACATACAGATTACACTTGTAATCCTGAATATGCATCCGAATGGAATAGACTTATGACCAAGAAGAATGCTTTCATAGAGAGAATCTTGGATGACGAGAAACGTCCCCCTAAGATAGTTATTGGTGGTATTATGCGGATGACTGCGTATTGGAATGTTGTTTTGAGAAGGTTGGTTGATTCCATGGCTTTGCATTTGCAGTTGAATGTTGCAAACCTTGTGAATCATGAAATGGAGATGGAGATGGAGATTTTCAATGAGTTAATGGGATCTAATCATGCTAGCGGGATTGAGAGGATGAGGGAGGAATTTCCATCAGTAGCAAGCAAGCGTGCGAAGCTCAATTAG

Protein Analysis

173

Amino Acids

20.15

Weight (kDa)

5.06

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 49
AciI CCGC 2 cut(s) 307, 456
AclWI GGATC 2 cut(s) 156, 448
AcsI RAATTY 1 cut(s) 479
AgsI TTSAA 4 cut(s) 131, 143, 376, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 2 cut(s) 20, 511
AluI AGCT 2 cut(s) 20, 511
AlwI GGATC 2 cut(s) 156, 448
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 242
AsuNHI GCTAGC 1 cut(s) 452
BccI CCATC 4 cut(s) 50, 403, 409, 493
BfaI CTAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 49
BmsI GCATC 1 cut(s) 215
BmtI GCTAGC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 5 cut(s) 85, 206, 268, 315, 474
BseNI ACTGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 148, 440
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 2 cut(s) 307, 456
BspHI TCATGA 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 49
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 156, 448
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 2 cut(s) 148, 440
BssT1I CCWWGG 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 454, 496, 500, 504
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 5 cut(s) 85, 206, 268, 315, 474
BstKTI GATC 2 cut(s) 151, 443
BstMBI GATC 2 cut(s) 148, 440
BstMWI GCNNNNNNNGC 2 cut(s) 109, 508
BstX2I RGATCY 2 cut(s) 148, 440
BstYI RGATCY 2 cut(s) 148, 440
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 5 cut(s) 85, 206, 268, 315, 474
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 454, 496, 500, 504
CciI TCATGA 1 cut(s) 397
CviAII CATG 3 cut(s) 355, 398, 449
CviJI RGCY 3 cut(s) 20, 359, 511
CviKI_1 RGCY 3 cut(s) 20, 359, 511
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 150, 442
DpnII GATC 2 cut(s) 148, 440
Eco130I CCWWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 358, 401, 452
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 354, 397, 448
FauI CCCGC 1 cut(s) 449
FokI GGATG 5 cut(s) 92, 193, 275, 322, 481
FspBI CTAG 1 cut(s) 453
Hin1II CATG 3 cut(s) 358, 401, 452
HinfI GANTC 3 cut(s) 255, 350, 394
Hpy188I TCNGA 2 cut(s) 34, 211
Hpy188III TCNNGA 2 cut(s) 197, 398
HpyAV CCTTC 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 206, 364, 370, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 508
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 358, 401, 452
Kzo9I GATC 2 cut(s) 148, 440
LpnPI CCDG 4 cut(s) 31, 44, 131, 210
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 150, 442
MboI GATC 2 cut(s) 148, 440
MboII GAAGA 2 cut(s) 119, 247
MflI RGATCY 2 cut(s) 148, 440
MluCI AATT 2 cut(s) 479, 514
MnlI CCTC 5 cut(s) 7, 70, 459, 465, 469
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 109, 508
NcoI CCATGG 1 cut(s) 354
NdeII GATC 2 cut(s) 148, 440
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 3 cut(s) 358, 401, 452
NsiI ATGCAT 1 cut(s) 208
PagI TCATGA 1 cut(s) 397
PaqCI CACCTGC 1 cut(s) 49
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 255, 350, 394
PsuI RGATCY 2 cut(s) 148, 440
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 434
Sau3AI GATC 2 cut(s) 148, 440
SetI ASST 7 cut(s) 22, 50, 63, 277, 344, 390, 513
SfaNI GCATC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 2 cut(s) 479, 514
SsiI CCGC 2 cut(s) 307, 456
SspMI CTAG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 354
TaiI ACGT 1 cut(s) 277
TasI AATT 2 cut(s) 479, 514
TfiI GAWTC 3 cut(s) 255, 350, 394
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 235, 414
XapI RAATTY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.