Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Forward (+)

9505864 .. 9507312

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGGGTTTCGGCGTGAGAAAAGGTGCATGGACTAAAGAGGAAGATGAACTTCTGAGACAGGTCATCGAAAAGCATGGAGAAGGAAAATGGCATCAGGTTCCTTTCAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTGAGGTGGCTAAATTATTTGAAGCCAAATATCAAGAGAGGGGAGTTTACAGTTGATGAAGTTGATATGATCATCAGACTTCATAAGCTTCTAGGAAACAGGTGGTCTTTAATTGCTGGAAGACTACCGGGAAGAACAGCCAACGATGTAAAGAACTATTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGGCGCAAAAAAAATGAAAGATAAATCCCAAAAAAACACAATCGCCCCTTTGGTTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTGAATTTTTTGGAAAGAGATGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTTCCACTTCTTTACCAACAGCACCACCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCTGAAGACAGTACAGGAAGCATTGATAGAACAACATGTTCTAGTCTTGGTTTAGAGGACGACTTCTTCACAAACTTCTGGGTTGAAGATATGGTACAATTGTCCAGTATAGATGGCCATGATCTAGTCAACAACTTCTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

235

Amino Acids

27.33

Weight (kDa)

9.3

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	8 - 55	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	11 - 69	7.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	61 - 105	3.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	64 - 107	5.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	436, 484
AcuI	CTGAAG	2 cut(s)	327, 585
AfaI	GTAC	2 cut(s)	574, 657
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	109, 166, 436, 647
AluBI	AGCT	2 cut(s)	138, 232
AluI	AGCT	2 cut(s)	138, 232
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	676
ApoI	RAATTY	2 cut(s)	436, 484
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BalI	TGGCCA	1 cut(s)	678
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbsI	GAAGAC	2 cut(s)	271, 573
BccI	CCATC	1 cut(s)	668
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	236, 524, 603, 686
BfmI	CTRYAG	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	103, 116, 442
BpiI	GAAGAC	2 cut(s)	271, 573
BpuMI	CCSGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	47, 137
BseNI	ACTGG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	213, 682
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	48, 138
BspLI	GGNNCC	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	666
BssMI	GATC	2 cut(s)	213, 682
Bst4CI	ACNGT	2 cut(s)	196, 572
Bst6I	CTCTTC	2 cut(s)	128, 474
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	56, 146
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	216, 685
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	213, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	271, 573
BsuRI	GGCC	1 cut(s)	678
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	573, 656
CviAII	CATG	5 cut(s)	30, 77, 597, 680, 705
CviJI	RGCY	7 cut(s)	117, 138, 154, 169, 232, 284, 678
CviKI_1	RGCY	7 cut(s)	117, 138, 154, 169, 232, 284, 678
CviQI	GTAC	2 cut(s)	573, 656
DdeI	CTNAG	2 cut(s)	56, 146
DpnI	GATC	2 cut(s)	215, 684
DpnII	GATC	2 cut(s)	213, 682
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	128, 474
EarI	CTCTTC	2 cut(s)	128, 474
Eco57I	CTGAAG	2 cut(s)	327, 585
EcoRI	GAATTC	1 cut(s)	484
FaeI	CATG	5 cut(s)	33, 80, 600, 683, 708
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	5 cut(s)	29, 76, 596, 679, 704
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	142
FspBI	CTAG	4 cut(s)	236, 524, 603, 686
GlaI	GCGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	33, 80, 600, 683, 708
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	143, 192, 691
Hpy188I	TCNGA	4 cut(s)	57, 221, 478, 565
Hpy188III	TCNNGA	2 cut(s)	178, 524
Hpy8I	GTNNAC	3 cut(s)	143, 192, 691
HpyAV	CCTTC	2 cut(s)	77, 430
HpyCH4III	ACNGT	2 cut(s)	196, 572
HpyCH4V	TGCA	2 cut(s)	29, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	2 cut(s)	56, 146
Hsp92II	CATG	5 cut(s)	33, 80, 600, 683, 708
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 682
LguI	GCTCTTC	1 cut(s)	128
LweI	GCATC	3 cut(s)	103, 116, 442
MaeI	CTAG	4 cut(s)	236, 524, 603, 686
MalI	GATC	2 cut(s)	215, 684
MboI	GATC	2 cut(s)	213, 682
MboII	GAAGA	9 cut(s)	56, 145, 276, 288, 480, 491, 578, 619, 659
MfeI	CAATTG	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
MluNI	TGGCCA	1 cut(s)	678
MnlI	CCTC	5 cut(s)	34, 141, 176, 417, 610
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	119, 254
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MunI	CAATTG	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	213, 682
NlaIII	CATG	5 cut(s)	33, 80, 600, 683, 708
NlaIV	GGNNCC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	600
PciI	ACATGT	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	574, 657
RsaNI	GTAC	2 cut(s)	573, 656
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	119, 254
Sau3AI	GATC	2 cut(s)	213, 682
ScrFI	CCNGG	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	103, 116, 442
SfcI	CTRYAG	1 cut(s)	139
Sse9I	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
SspMI	CTAG	4 cut(s)	236, 524, 603, 686
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	196, 572
TaqI	TCGA	2 cut(s)	69, 409
TasI	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	119, 254
Tru9I	TTAA	2 cut(s)	119, 254
TspDTI	ATGAA	6 cut(s)	63, 215, 216, 374, 412, 461
TspGWI	ACGGA	1 cut(s)	334
XapI	RAATTY	2 cut(s)	436, 484
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	4 cut(s)	236, 524, 603, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.