Rmu_sc0004240.1_g000005
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004240.1
Physical Location & Seq
Forward (+)
16930 .. 18195
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004240.1_g000005.1.cds

Sequence Viewer

Length: 1266 bp
atgggagcagcaaagcaaacagatttagcatgcatttcagaaggtgaaggatcttcatgtgtagaacaacatgccatcattgaagccgcaccgattgtgtcatcctacaatgaaaaaatccgtcctctgcttgacgccgttgacaagctcaggagcctcatggttatggaggaaggcattcagctccccaccattgttgttgtaggtgaccaatcatctggcaaatcaagcgtccttgaatccctggccggcatcagcctgccacgtggacaaggtatctgcaccagagtaccccttataatgaggcttcaacaccactctagtcctgaaccagagttccggttggagtacaatggcaaagttgagcacactgatgaggtcaacattgctgatgatattgtcaatgccaccaatgttattgctggtggaggtaagggaatttctaacaccccattgactctgttggtgaaaaagaatggtgttcctgatttgactatggttgatctccctggaatcactagagttcctgttcatggtcagcctgaggatatctatgatcaaatcaaagacatgatcatgcattatataaagcctgaagagagcatcattctcaatgtgttgtctgctactgtcgattttacaacttgtgaatccatcatgatgtcacagagtgtggataaagctggtcataggactctggctgtggtcacaaaggttgataaggcgcccgaaggactattagagaaggttacagcagatgatgttagtattggtcttggttatgtttgtgtgaggaaccggattggagatgaaactaatgagaaggcaagggctatatctcaacaactttttcaaactcatcctttgctgtccaagattgataaatctatggttggaattccagttctggctcaaaagttggtgcaaattcaagcttctagcatagctagaaacttgccagacatcgtcaagaagataaatgacaagctgagttcttgtcttttggagttgaacaagatgccaaagaaactttcatctgttagtgaagccatgaccacgtttatgcagatcatcggatcatcaaaagaatcgcttaggaaaattctggtgagaggagaatttgatgaattccctgatgacaagagcatgcattgcaccgctcggctttttgagatgctcaatcagtactcagatcaacttcaaaagtgtgaagaaagtgacccgaaaaagaacttcttagtagaggagatcaagattaggtattag

Protein Analysis

421

Amino Acids

46.29

Weight (kDa)

5.51

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 724
AccBSI CCGCTC 1 cut(s) 1160
AciI CCGC 2 cut(s) 87, 1158
AclWI GGATC 2 cut(s) 58, 1084
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 6 cut(s) 438, 897, 927, 1101, 1118, 1127
AcuI CTGAAG 1 cut(s) 615
AcvI CACGTG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 135, 725
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 3 cut(s) 291, 350, 1187
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 7 cut(s) 83, 239, 311, 854, 932, 1012, 1202
AjnI CCWGG 2 cut(s) 243, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 1015, 1047
AloI GAACNNNNNNTCC 4 cut(s) 321, 353, 888, 920
AluBI AGCT 6 cut(s) 148, 184, 683, 935, 947, 988
AluI AGCT 6 cut(s) 148, 184, 683, 935, 947, 988
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 58, 1084
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 6 cut(s) 438, 897, 927, 1101, 1118, 1127
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 727
AsuHPI GGTGA 4 cut(s) 56, 218, 478, 1120
AxyI CCTNAGG 1 cut(s) 543
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 1 cut(s) 724
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 83, 662
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 245, 510
BclI TGATCA 2 cut(s) 556, 573
BfaI CTAG 4 cut(s) 321, 519, 939, 948
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 2 cut(s) 9, 87
BlsI GCNGC 2 cut(s) 10, 88
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 2 cut(s) 245, 510
BmiI GGNNCC 3 cut(s) 155, 726, 797
BmrFI CCNGG 2 cut(s) 245, 510
BmsI GCATC 4 cut(s) 261, 612, 1008, 1164
Bpu10I CCTNAGC 2 cut(s) 149, 1094
BsaAI YACGTR 1 cut(s) 266
BsaHI GRCGYC 2 cut(s) 135, 725
BsaJI CCNNGG 2 cut(s) 243, 508
BsaWI WCCGGW 2 cut(s) 339, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 902
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 2 cut(s) 384, 1150
BseBI CCWGG 2 cut(s) 245, 510
BseDI CCNNGG 2 cut(s) 243, 508
BseGI GGATG 2 cut(s) 101, 859
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 2 cut(s) 384, 1150
BseMII CTCAG 4 cut(s) 163, 534, 980, 1203
BseNI ACTGG 1 cut(s) 902
BseRI GAGGAG 2 cut(s) 1128, 1259
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 3 cut(s) 249, 340, 799
BslI CCNNNNNNNGG 1 cut(s) 533
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
BspACI CCGC 2 cut(s) 87, 1158
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 4 cut(s) 162, 535, 981, 1202
BspHI TCATGA 1 cut(s) 657
BspLI GGNNCC 3 cut(s) 155, 726, 797
BspPI GGATC 2 cut(s) 58, 1084
BspT107I GGYRCC 1 cut(s) 724
BsrBI CCGCTC 1 cut(s) 1160
BsrDI GCAATG 2 cut(s) 384, 1150
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 902
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 243, 508
BssMI GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
BssNI GRCGYC 2 cut(s) 135, 725
Bst2UI CCWGG 2 cut(s) 245, 510
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 2 cut(s) 135, 725
BstAPI GCANNNNNTGC 1 cut(s) 1152
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 31, 250, 260, 1148
BstDEI CTNAG 6 cut(s) 149, 543, 989, 1094, 1189, 1237
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 101, 859
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 8 cut(s) 53, 505, 559, 576, 1071, 1079, 1195, 1251
BstMBI GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
BstMWI GCNNNNNNNGC 2 cut(s) 228, 1152
BstNI CCWGG 2 cut(s) 245, 510
BstNSI RCATGY 3 cut(s) 33, 74, 1150
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 243, 508
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 2 cut(s) 101, 859
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 31, 250, 260, 1148
CciI TCATGA 1 cut(s) 657
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 2 cut(s) 143, 220
Csp6I GTAC 3 cut(s) 290, 349, 1186
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviQI GTAC 3 cut(s) 290, 349, 1186
DdeI CTNAG 6 cut(s) 149, 543, 989, 1094, 1189, 1237
DinI GGCGCC 1 cut(s) 726
DpnI GATC 8 cut(s) 52, 504, 558, 575, 1070, 1078, 1194, 1250
DpnII GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
DraIII CACNNNGTG 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco32I GATATC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 615
Eco72I CACGTG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 897, 1127
EcoRII CCWGG 2 cut(s) 243, 508
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 3 cut(s) 35, 582, 1152
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FalI AAGNNNNNCTT 4 cut(s) 1077, 1109, 1220, 1252
FbaI TGATCA 2 cut(s) 556, 573
Fnu4HI GCNGC 2 cut(s) 9, 87
FokI GGATG 2 cut(s) 88, 846
Fsp4HI GCNGC 2 cut(s) 9, 87
FspBI CTAG 4 cut(s) 321, 519, 939, 948
GlaI GCGC 1 cut(s) 726
GluI GCNGC 2 cut(s) 9, 87
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 1 cut(s) 248
HapII CCGG 3 cut(s) 249, 340, 799
HgaI GACGC 2 cut(s) 143, 220
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 2 cut(s) 135, 725
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 2 cut(s) 142, 382
HindII GTYRAC 2 cut(s) 142, 382
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 6 cut(s) 239, 457, 513, 650, 694, 1088
HpaII CCGG 3 cut(s) 249, 340, 799
HphI GGTGA 4 cut(s) 56, 218, 478, 1120
Hpy166II GTNNAC 3 cut(s) 142, 269, 382
Hpy188I TCNGA 3 cut(s) 40, 1076, 1192
Hpy188III TCNNGA 6 cut(s) 151, 326, 485, 658, 970, 1252
Hpy8I GTNNAC 3 cut(s) 142, 269, 382
HpyAV CCTTC 6 cut(s) 35, 41, 167, 725, 739, 817
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4IV ACGT 2 cut(s) 265, 1058
HpyCH4V TGCA 7 cut(s) 33, 282, 580, 925, 1066, 1150, 1155
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 1152
HpyF3I CTNAG 6 cut(s) 149, 543, 989, 1094, 1189, 1237
HpySE526I ACGT 2 cut(s) 265, 1058
Hsp92I GRCGYC 2 cut(s) 135, 725
HspAI GCGC 1 cut(s) 725
KasI GGCGCC 1 cut(s) 724
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 556, 573
Kzo9I GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
LmnI GCTCC 3 cut(s) 5, 153, 189
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 4 cut(s) 261, 612, 1008, 1164
MaeI CTAG 4 cut(s) 321, 519, 939, 948
MaeII ACGT 2 cut(s) 265, 1058
MaeIII GTNAC 5 cut(s) 206, 663, 706, 748, 1217
MalI GATC 8 cut(s) 52, 504, 558, 575, 1070, 1078, 1194, 1250
MbiI CCGCTC 1 cut(s) 1160
MboI GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
MboII GAAGA 4 cut(s) 45, 608, 985, 1223
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 6 cut(s) 438, 897, 927, 1101, 1118, 1127
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 2 cut(s) 451, 688
MmeI TCCRAC 2 cut(s) 324, 874
Mph1103I ATGCAT 3 cut(s) 35, 582, 1152
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 177
MslI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
MspI CCGG 3 cut(s) 249, 340, 799
MspR9I CCNGG 2 cut(s) 245, 510
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 2 cut(s) 245, 510
MwoI GCNNNNNNNGC 2 cut(s) 228, 1152
NaeI GCCGGC 1 cut(s) 250
NarI GGCGCC 1 cut(s) 725
NdeII GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
NgoMIV GCCGGC 1 cut(s) 248
NlaIV GGNNCC 3 cut(s) 155, 726, 797
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 4 cut(s) 206, 663, 706, 1217
NsiI ATGCAT 3 cut(s) 35, 582, 1152
NspI RCATGY 3 cut(s) 33, 74, 1150
PaeI GCATGC 2 cut(s) 33, 1150
PagI TCATGA 1 cut(s) 657
PctI GAATGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 4 cut(s) 239, 513, 650, 1088
PflFI GACNNNGTC 1 cut(s) 965
PkrI GCNGC 2 cut(s) 10, 88
PleI GAGTC 2 cut(s) 451, 688
PluTI GGCGCC 1 cut(s) 728
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 2 cut(s) 451, 688
Ppu21I YACGTR 1 cut(s) 266
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 243, 508
PspCI CACGTG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 243, 508
PspN4I GGNNCC 3 cut(s) 155, 726, 797
PsuI RGATCY 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 965
RsaI GTAC 3 cut(s) 291, 350, 1187
RsaNI GTAC 3 cut(s) 290, 349, 1186
RseI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
SatI GCNGC 2 cut(s) 9, 87
Sau3AI GATC 8 cut(s) 50, 502, 556, 573, 1068, 1076, 1192, 1248
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 2 cut(s) 451, 688
ScrFI CCNGG 2 cut(s) 245, 510
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 4 cut(s) 261, 612, 1008, 1164
SfoI GGCGCC 1 cut(s) 726
SmiMI CAYNNNNRTG 5 cut(s) 164, 372, 575, 659, 1061
SphI GCATGC 2 cut(s) 33, 1150
Sse9I AATT 6 cut(s) 438, 897, 927, 1101, 1118, 1127
SsiI CCGC 2 cut(s) 87, 1158
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 4 cut(s) 321, 519, 939, 948
StyD4I CCNGG 2 cut(s) 243, 508
TaaI ACNGT 1 cut(s) 631
TaiI ACGT 2 cut(s) 268, 1061
TaqI TCGA 1 cut(s) 633
TasI AATT 6 cut(s) 438, 897, 927, 1101, 1118, 1127
TatI WGTACW 2 cut(s) 348, 1185
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 239, 513, 650, 1088
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 4 cut(s) 206, 663, 706, 1217
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 4 cut(s) 206, 663, 706, 1217
TspDTI ATGAA 6 cut(s) 45, 126, 521, 825, 1023, 1140
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 965
XapI RAATTY 6 cut(s) 438, 897, 927, 1101, 1118, 1127
XceI RCATGY 3 cut(s) 33, 74, 1150
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 4 cut(s) 321, 519, 939, 948
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 3 cut(s) 35, 582, 1152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.