Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Forward (+)

63892181 .. 63894247

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAGCAGGGGCAAAGCACAGTACTGCTTCAAAAAGCACTGCCAGCAAAAGCAAATCAACCGCTGCAATCCCAAACGTACTAGGAAATTCATCCTTGGCCATAGTAGAACAGCAAGATGTGGTACCTCTCGCTATCAACGCACCGATTGTGTCGTCTTACAACGACAAAATCCGTCCTCTCCTTGATGCAGTGGACAAGCTTCGGAACCTGATGGTTATGGATGAAGGCATCCAGCTCCCAACAATCGTTGTAATCCTTGGATGTACAAAGGAGTCACTCAGGAAAATTCTTCTGAGAGGCGAATTTGATGAGTATTCTGATGATAGAAGGATGCACTGCACAGCTCGGTTGGTTGAGATGCTCAATCAATACTCTGATGATCTTTACAAGTGTGCGGAGAGCGACCCCAAGATCAAGTTTTTGATGGATGAGATCAAGATTTTGGAAGAAGTCAAAGGTATTGCGCTTCCGAATTTTCTTCCTCGCAATGCTTTTCTTCTAATGTTGCAATCAAAAGTTAGGGAGATTTCGAGCATACCTATTGGATTTGTAGATCAAGTCTGGAGTTACATTGAGGATGTTGTAATATCAGTCTTGATGAAACACTCGGAAAATTACTACCAGCTTCAGTTGTCTGCCAGAAGAGCTGGTCATAATCTGATGGCTAAGATGAAGGATAGGTCCATTAGGTGGATGATGGAGATTGTTGAAATGGAGAAGCTTACTGACTATACATGTAATCCTGATTATGTTGCTGAATGGAATAAGTTGATGGCTCAGCAGGAAGCATTTATGAATGGGGTTCTGCATGATGAGAAACGGCCTTCTACTATAGCTATACAGGGTATTGGGGAGGTTGAGGTTGAAGTCCTTAGGCATTACCCTCATGTGCTTGCTCAGGCTTTTGACCTGAAGATGAGGATGACTGCTTATTGGAAAGTTGTACTGAGGAGGTTCGTTGATTGTATGGCACTGCATTTGCAGTTGTGTGTTTCAAATCTGGTGAACAAAGAGATGGAAGTTGAGATTGTTAATGAGTTGATGGGGCCATATGGTGGTGGAATTGAGAGGATGCTTGAGGAGTCACCGGCTGTGGCTGTTAAACGTGAGAAGCTGCACAAGAGTATCAAGAAGCTGAGGGACTCTAAGGAGGTTGTGGCCAAGATTATGGATGGCATCATTAGCTATGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

399

Amino Acids

45.28

Weight (kDa)

6.35

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	53 - 259	2e-31	Dynamin central region
GED	PF02212	301 - 389	1e-09	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	124
AccB7I	CCANNNNNTGG	2 cut(s)	693, 1058
AciI	CCGC	2 cut(s)	63, 398
AcoI	YGGCCR	2 cut(s)	99, 1161
AcsI	RAATTY	4 cut(s)	88, 288, 305, 475
AcuI	CTGAAG	2 cut(s)	614, 935
AfaI	GTAC	5 cut(s)	25, 81, 126, 268, 948
AfiI	CCNNNNNNNGG	2 cut(s)	693, 1058
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	4 cut(s)	33, 713, 869, 999
AoxI	GGCC	4 cut(s)	99, 824, 1049, 1161
ApeKI	GCWGC	2 cut(s)	65, 1117
ApoI	RAATTY	4 cut(s)	88, 288, 305, 475
Asp718I	GGTACC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	684, 1049
AsuHPI	GGTGA	2 cut(s)	1018, 1080
AvaII	GGWCC	1 cut(s)	684
AxyI	CCTNAGG	1 cut(s)	875
BaeI	ACNNNNGTAYC	2 cut(s)	1111, 1144
BalI	TGGCCA	2 cut(s)	101, 1163
BanI	GGYRCC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	1139
BbvI	GCAGC	2 cut(s)	52, 1104
BccI	CCATC	8 cut(s)	208, 421, 658, 694, 769, 1012, 1039, 1169
BceAI	ACGGC	1 cut(s)	839
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	834
BisI	GCNGC	2 cut(s)	66, 1118
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	2 cut(s)	67, 1119
BmcAI	AGTACT	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	684, 1049
BmiI	GGNNCC	3 cut(s)	126, 209, 1050
BmsI	GCATC	6 cut(s)	178, 240, 324, 351, 1065, 1188
BpmI	CTGGAG	1 cut(s)	586
Bpu10I	CCTNAGC	2 cut(s)	900, 1139
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	1100
BsaJI	CCNNGG	2 cut(s)	96, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	693, 1058
Bse118I	RCCGGY	1 cut(s)	1090
Bse21I	CCTNAGG	1 cut(s)	875
Bse3DI	GCAATG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	96, 259
BseLI	CCNNNNNNNGG	2 cut(s)	693, 1058
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	6 cut(s)	287, 295, 794, 914, 941, 1130
BseRI	GAGGAG	2 cut(s)	967, 1097
BseXI	GCAGC	2 cut(s)	52, 1104
BsgI	GTGCAG	2 cut(s)	325, 1103
BshFI	GGCC	4 cut(s)	101, 826, 1051, 1163
BshNI	GGYRCC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	1091
BslFI	GGGAC	1 cut(s)	1157
BslI	CCNNNNNNNGG	2 cut(s)	693, 1058
BsmFI	GGGAC	1 cut(s)	1157
BsnI	GGCC	4 cut(s)	101, 826, 1051, 1163
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	4 cut(s)	382, 414, 435, 556
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	2 cut(s)	63, 398
BspANI	GGCC	4 cut(s)	101, 826, 1051, 1163
BspCNI	CTCAG	6 cut(s)	288, 294, 793, 913, 942, 1131
BspLI	GGNNCC	3 cut(s)	126, 209, 1050
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	1090
BsrGI	TGTACA	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	1090
BssECI	CCNNGG	2 cut(s)	96, 259
BssMI	GATC	4 cut(s)	382, 414, 435, 556
BssT1I	CCWWGG	2 cut(s)	96, 259
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	640
BstAUI	TGTACA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	46, 897
BstDEI	CTNAG	9 cut(s)	281, 296, 669, 780, 875, 900, 950, 1139, 1149
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	385, 417, 438, 559
BstMBI	GATC	4 cut(s)	382, 414, 435, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 140, 647, 1185
BstNSI	RCATGY	1 cut(s)	741
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	52, 1104
BstXI	CCANNNNNNTGG	1 cut(s)	1171
Bsu36I	CCTNAGG	1 cut(s)	875
BsuRI	GGCC	4 cut(s)	101, 826, 1051, 1163
BtsI	GCAGTG	4 cut(s)	39, 198, 337, 974
BtsIMutI	CAGTG	4 cut(s)	39, 198, 337, 974
Cac8I	GCNNGC	2 cut(s)	46, 897
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	1090
Cfr13I	GGNCC	2 cut(s)	684, 1049
Csp6I	GTAC	5 cut(s)	24, 80, 125, 267, 947
CviAII	CATG	3 cut(s)	738, 812, 890
CviQI	GTAC	5 cut(s)	24, 80, 125, 267, 947
DdeI	CTNAG	9 cut(s)	281, 296, 669, 780, 875, 900, 950, 1139, 1149
DpnI	GATC	4 cut(s)	384, 416, 437, 558
DpnII	GATC	4 cut(s)	382, 414, 435, 556
EaeI	YGGCCR	2 cut(s)	99, 1161
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
Eco130I	CCWWGG	2 cut(s)	96, 259
Eco47I	GGWCC	1 cut(s)	684
Eco57I	CTGAAG	2 cut(s)	614, 935
Eco81I	CCTNAGG	1 cut(s)	875
EcoT14I	CCWWGG	2 cut(s)	96, 259
ErhI	CCWWGG	2 cut(s)	96, 259
FaeI	CATG	3 cut(s)	741, 815, 893
FaqI	GGGAC	1 cut(s)	1157
FatI	CATG	3 cut(s)	737, 811, 889
FauNDI	CATATG	1 cut(s)	1054
Fnu4HI	GCNGC	2 cut(s)	66, 1118
Fsp4HI	GCNGC	2 cut(s)	66, 1118
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	66, 1118
GsuI	CTGGAG	1 cut(s)	586
HaeIII	GGCC	4 cut(s)	101, 826, 1051, 1163
HapII	CCGG	1 cut(s)	1091
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	741, 815, 893
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	2 cut(s)	200, 722
HinfI	GANTC	3 cut(s)	275, 1085, 1145
HpaII	CCGG	1 cut(s)	1091
HphI	GGTGA	2 cut(s)	1018, 1080
Hpy166II	GTNNAC	2 cut(s)	196, 1009
Hpy188I	TCNGA	7 cut(s)	207, 297, 322, 379, 474, 613, 663
Hpy188III	TCNNGA	6 cut(s)	283, 439, 565, 598, 746, 1132
Hpy8I	GTNNAC	2 cut(s)	196, 1009
HpyAV	CCTTC	4 cut(s)	221, 324, 670, 837
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	2 cut(s)	78, 1108
HpyCH4V	TGCA	9 cut(s)	68, 191, 337, 342, 511, 811, 979, 985, 1120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 140, 647, 1185
HpyF3I	CTNAG	9 cut(s)	281, 296, 669, 780, 875, 900, 950, 1139, 1149
HpySE526I	ACGT	2 cut(s)	78, 1108
Hsp92II	CATG	3 cut(s)	741, 815, 893
HspAI	GCGC	1 cut(s)	467
KpnI	GGTACC	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	382, 414, 435, 556
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	2 cut(s)	5, 243
Lsp1109I	GCAGC	2 cut(s)	52, 1104
LweI	GCATC	6 cut(s)	178, 240, 324, 351, 1065, 1188
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	2 cut(s)	78, 1108
MaeIII	GTNAC	3 cut(s)	276, 569, 1086
MalI	GATC	4 cut(s)	384, 416, 437, 558
MboI	GATC	4 cut(s)	382, 414, 435, 556
MboII	GAAGA	6 cut(s)	284, 461, 473, 491, 657, 928
MlsI	TGGCCA	2 cut(s)	101, 1163
MluCI	AATT	6 cut(s)	88, 288, 305, 475, 616, 1065
MluNI	TGGCCA	2 cut(s)	101, 1163
MlyI	GAGTC	3 cut(s)	284, 1094, 1139
Mox20I	TGGCCA	2 cut(s)	101, 1163
MscI	TGGCCA	2 cut(s)	101, 1163
MseI	TTAA	3 cut(s)	1035, 1104, 1198
Msp20I	TGGCCA	2 cut(s)	101, 1163
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	1091
MwoI	GCNNNNNNNGC	4 cut(s)	45, 140, 647, 1185
NdeI	CATATG	1 cut(s)	1054
NdeII	GATC	4 cut(s)	382, 414, 435, 556
NlaIII	CATG	3 cut(s)	741, 815, 893
NlaIV	GGNNCC	3 cut(s)	126, 209, 1050
NmuCI	GTSAC	2 cut(s)	276, 1086
NspI	RCATGY	1 cut(s)	741
PciI	ACATGT	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	640
PflMI	CCANNNNNTGG	2 cut(s)	693, 1058
PkrI	GCNGC	2 cut(s)	67, 1119
PleI	GAGTC	3 cut(s)	283, 1093, 1139
PpsI	GAGTC	3 cut(s)	283, 1093, 1139
PscI	ACATGT	1 cut(s)	737
PspN4I	GGNNCC	3 cut(s)	126, 209, 1050
PspPI	GGNCC	2 cut(s)	684, 1049
RsaI	GTAC	5 cut(s)	25, 81, 126, 268, 948
RsaNI	GTAC	5 cut(s)	24, 80, 125, 267, 947
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	1035, 1104, 1198
SatI	GCNGC	2 cut(s)	66, 1118
Sau3AI	GATC	4 cut(s)	382, 414, 435, 556
Sau96I	GGNCC	2 cut(s)	684, 1049
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	3 cut(s)	284, 1094, 1139
SfaNI	GCATC	6 cut(s)	178, 240, 324, 351, 1065, 1188
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
Sse9I	AATT	6 cut(s)	88, 288, 305, 475, 616, 1065
SsiI	CCGC	2 cut(s)	63, 398
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	96, 259
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	2 cut(s)	81, 1111
TaqI	TCGA	1 cut(s)	533
TasI	AATT	6 cut(s)	88, 288, 305, 475, 616, 1065
TatI	WGTACW	3 cut(s)	23, 266, 946
Tru1I	TTAA	3 cut(s)	1035, 1104, 1198
Tru9I	TTAA	3 cut(s)	1035, 1104, 1198
TscAI	CASTG	4 cut(s)	46, 198, 344, 981
TseFI	GTSAC	2 cut(s)	276, 1086
TseI	GCWGC	2 cut(s)	65, 1117
Tsp45I	GTSAC	2 cut(s)	276, 1086
TspDTI	ATGAA	5 cut(s)	81, 240, 617, 689, 812
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	4 cut(s)	46, 198, 344, 981
Van91I	CCANNNNNTGG	2 cut(s)	693, 1058
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	4 cut(s)	88, 288, 305, 475
XceI	RCATGY	1 cut(s)	741
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.