RchiOBHm_Chr1g0326171
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
14399598 .. 14405005
5408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55581

Sequence Viewer

Length: 897 bp
ATGGGAGTAGCAAGGCAAACAGATTTAGCATGCATTTCAGAAGGTGAAGGATCATCATGTGTAGAACAACATGCCATCATTGAAGCCGCACCGATTGTGTCATCCTACAATGACAAAATCCGTCCACTCCTTGACGCCGTTGACAAGCTCAGGAGCCTCATGGTTATGGAGGAAGGCATTCAGCTCCCCACCATTGTTGTTGTAGGTGACCAATCATCTGGCAAGTCAAGCGTCCTTGAATCCCTGGCCGGCATCAGCCTGCCACGTGGACAAGGTATCTGCACCAGGGTACCCCTTATAATGAGGCTTCAACACCACTCTAGTCCTGAACCAGAGTTCCAGCTGGAGTACAATGGCAAAGTTGAGCACACTGATGAGGTCAACATAGCTGATGATATTATCAATGCCACCAATGCTATTGCTGGGGGAGGTAAGGGAATTTCTAACACCCCATTGACTTTGTTGGTGAAAAAGGATGGTGTTCCGGATTTGACTATGGTAGATCTCCCTGGAATCACTAGAGTTCCTGTTCGTGGTCAGCCTGAGGATATCTATGATCAAATCAAAGTCATGATCATGCATTATATCAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTTGATTTTACAACTTGTGAATCCATCAGGATGTCACAGAGTGTGGATAGAACTGGTGATAGGACTCTGGCTGTGGTCACAAAGGTTGATCAGGCTCCCGAAGGACTATTAGAGAAGGTTACAGCAGATGATGTTAGTATAGGTCTCGGTTATGTCTGTGTGAGGAACAGGATTGGAGATGAAACTTATGAGGAGGCAAGGGCTAAATCTCAACAACTATTTCAAACTCATCCTTTGCTGTCTAAGATTGACAGTTGGACGTGCTAA

Protein Analysis

298

Amino Acids

32.39

Weight (kDa)

4.82

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 65 - 239 7.9e-41 Dynamin family
Dynamin_M PF01031 246 - 294 4.8e-07 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 289
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 615
AcvI CACGTG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 2 cut(s) 291, 350
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 4 cut(s) 83, 239, 311, 854
AjiI CACGTC 1 cut(s) 891
AjnI CCWGG 3 cut(s) 243, 284, 508
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 4 cut(s) 148, 184, 343, 389
AluI AGCT 4 cut(s) 148, 184, 343, 389
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 177
Asp718I GGTACC 1 cut(s) 289
AsuHPI GGTGA 4 cut(s) 56, 218, 478, 698
AxyI CCTNAGG 1 cut(s) 543
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanI GGYRCC 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 3 cut(s) 83, 470, 662
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 3 cut(s) 245, 286, 510
BclI TGATCA 3 cut(s) 556, 573, 718
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 2 cut(s) 321, 519
BglII AGATCT 1 cut(s) 502
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 245, 286, 510
BmgBI CACGTC 1 cut(s) 891
BmiI GGNNCC 3 cut(s) 155, 291, 726
BmrFI CCNGG 3 cut(s) 245, 286, 510
BmsI GCATC 2 cut(s) 261, 612
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 243, 285, 508
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 688
Bse21I CCTNAGG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 3 cut(s) 245, 286, 510
BseDI CCNNGG 3 cut(s) 243, 285, 508
BseGI GGATG 4 cut(s) 101, 481, 666, 859
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 163, 534
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 1 cut(s) 836
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 249, 485
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 779
Bsp1286I GDGCHC 1 cut(s) 369
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 5 cut(s) 50, 502, 556, 573, 718
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 162, 535
BspEI TCCGGA 1 cut(s) 484
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 155, 291, 726
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 243, 285, 508
BssMI GATC 5 cut(s) 50, 502, 556, 573, 718
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 3 cut(s) 245, 286, 510
Bst4CI ACNGT 2 cut(s) 631, 884
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 31, 250, 260
BstDEI CTNAG 3 cut(s) 149, 543, 873
BstEII GGTNACC 1 cut(s) 206
BstF5I GGATG 4 cut(s) 101, 481, 666, 859
BstKTI GATC 5 cut(s) 53, 505, 559, 576, 721
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 5 cut(s) 50, 502, 556, 573, 718
BstMWI GCNNNNNNNGC 2 cut(s) 228, 413
BstNI CCWGG 3 cut(s) 245, 286, 510
BstNSI RCATGY 2 cut(s) 33, 74
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 243, 284, 508
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 1 cut(s) 248
BtrI CACGTC 1 cut(s) 891
BtsCI GGATG 4 cut(s) 101, 481, 666, 859
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 31, 250, 260
CciI TCATGA 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 2 cut(s) 143, 220
Csp6I GTAC 2 cut(s) 290, 349
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 6 cut(s) 30, 57, 71, 160, 571, 577
CviQI GTAC 2 cut(s) 290, 349
DdeI CTNAG 3 cut(s) 149, 543, 873
DpnI GATC 5 cut(s) 52, 504, 558, 575, 720
DpnII GATC 5 cut(s) 50, 502, 556, 573, 718
DraIII CACNNNGTG 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 779
Eco32I GATATC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 615
Eco72I CACGTG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 243, 284, 508
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 2 cut(s) 35, 582
FaeI CATG 6 cut(s) 33, 60, 74, 163, 574, 580
FatI CATG 6 cut(s) 29, 56, 70, 159, 570, 576
FbaI TGATCA 3 cut(s) 556, 573, 718
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 4 cut(s) 88, 488, 673, 846
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 321, 519
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 248
HapII CCGG 2 cut(s) 249, 485
HgaI GACGC 2 cut(s) 143, 220
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 6 cut(s) 33, 60, 74, 163, 574, 580
HincII GTYRAC 2 cut(s) 142, 382
HindII GTYRAC 2 cut(s) 142, 382
HinfI GANTC 4 cut(s) 239, 513, 650, 694
HpaII CCGG 2 cut(s) 249, 485
HphI GGTGA 4 cut(s) 56, 218, 478, 698
Hpy166II GTNNAC 4 cut(s) 125, 142, 269, 382
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 6 cut(s) 151, 326, 485, 571, 658, 728
Hpy8I GTNNAC 4 cut(s) 125, 142, 269, 382
HpyAV CCTTC 5 cut(s) 35, 41, 167, 725, 739
HpyCH4III ACNGT 2 cut(s) 631, 884
HpyCH4IV ACGT 2 cut(s) 265, 890
HpyCH4V TGCA 3 cut(s) 33, 282, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 413
HpyF3I CTNAG 3 cut(s) 149, 543, 873
HpySE526I ACGT 2 cut(s) 265, 890
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 6 cut(s) 33, 60, 74, 163, 574, 580
Kpn2I TCCGGA 1 cut(s) 484
KpnI GGTACC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Ksp22I TGATCA 3 cut(s) 556, 573, 718
Kzo9I GATC 5 cut(s) 50, 502, 556, 573, 718
LmnI GCTCC 3 cut(s) 153, 189, 730
LweI GCATC 2 cut(s) 261, 612
MaeI CTAG 2 cut(s) 321, 519
MaeII ACGT 2 cut(s) 265, 890
MaeIII GTNAC 4 cut(s) 206, 663, 706, 748
MalI GATC 5 cut(s) 52, 504, 558, 575, 720
MboI GATC 5 cut(s) 50, 502, 556, 573, 718
MboII GAAGA 1 cut(s) 608
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 438
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 1 cut(s) 866
MnlI CCTC 9 cut(s) 163, 167, 297, 370, 422, 538, 786, 814, 817
Mph1103I ATGCAT 2 cut(s) 35, 582
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 177
MslI CAYNNNNRTG 4 cut(s) 164, 372, 575, 659
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 2 cut(s) 249, 485
MspR9I CCNGG 3 cut(s) 245, 286, 510
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 3 cut(s) 245, 286, 510
MwoI GCNNNNNNNGC 2 cut(s) 228, 413
NaeI GCCGGC 1 cut(s) 250
NdeII GATC 5 cut(s) 50, 502, 556, 573, 718
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 6 cut(s) 33, 60, 74, 163, 574, 580
NlaIV GGNNCC 3 cut(s) 155, 291, 726
NmuCI GTSAC 3 cut(s) 206, 663, 706
NsiI ATGCAT 2 cut(s) 35, 582
NspI RCATGY 2 cut(s) 33, 74
PaeI GCATGC 1 cut(s) 33
PagI TCATGA 1 cut(s) 570
PctI GAATGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 239, 513, 650
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 688
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 1 cut(s) 688
Ppu21I YACGTR 1 cut(s) 266
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 3 cut(s) 243, 284, 508
PspCI CACGTG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 3 cut(s) 243, 284, 508
PspN4I GGNNCC 3 cut(s) 155, 291, 726
PsuI RGATCY 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 2 cut(s) 291, 350
RsaNI GTAC 2 cut(s) 290, 349
RseI CAYNNNNRTG 4 cut(s) 164, 372, 575, 659
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 5 cut(s) 50, 502, 556, 573, 718
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 3 cut(s) 245, 286, 510
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 2 cut(s) 261, 612
SmiMI CAYNNNNRTG 4 cut(s) 164, 372, 575, 659
SphI GCATGC 1 cut(s) 33
Sse9I AATT 1 cut(s) 438
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 321, 519
StyD4I CCNGG 3 cut(s) 243, 284, 508
TaaI ACNGT 2 cut(s) 631, 884
TaiI ACGT 2 cut(s) 268, 893
TasI AATT 1 cut(s) 438
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 3 cut(s) 239, 513, 650
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 3 cut(s) 206, 663, 706
Tsp45I GTSAC 3 cut(s) 206, 663, 706
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 376
XapI RAATTY 1 cut(s) 438
XceI RCATGY 2 cut(s) 33, 74
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 321, 519
Zsp2I ATGCAT 2 cut(s) 35, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.