Rh1BG057600
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
8523186 .. 8524421
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG057600.1

Sequence Viewer

Length: 1236 bp
ATGTCTGTCAGGAATAGGATTGGAGAGGAAACCTATGAGGAGGCAAGGGCTTTCTCTGACCAACTATTCCAAACTCATCCTCTGCTTTCTAAAATTGATAAATCCATGGTTGGAGTTCATGTTTTAGCACAGAAGTTGGTGCAAATTCAAGCTACAAGTATAGCCAGGAGCTTACCTGAGATCGTGAAGAAGATAGATGACAAGCTGAATTTTTGTCTTTCGGAGCTGAACAAACTGCCTAAAGGTCTTTCATCTTTTGCTGAGGCGATAACGGCTTTCATGCAGATAATTGGATCGTCGAAAGAATCGCTTAGTAAAATTCTTGTGAGAGGAGAATTTGATGAGTACCCAGAAGAAAAACACAAGCATGGGACCGCTAGACTGGTTGAATTGCTTAATCAGTATTCTGAAGAACTGCACGAGTGTGATGGAACTGATGTCGCAAGTAATTTCTTGATGCAGGAGATTAGGGTTTTAGGGGAGGCAAAACGTACGAGTCTTCCAAATTTTCTTCCCCGCAGTGCTTTTCTGGTTATTTTGCAGGGAAAAGTGAAGGGAATTTCGAGTATTCCGATTCGATTTGTTGAGAAGATATGGGGCTACATCGAGGATGTGATGATATCTGTGTTGATGAAACATTCAGAAAATTATGTTCAGCTTCAGTTGTGTGCTAAAAGAGCTGGCCATAATTTGATCGCCAAGATGAAAGAAAGATCAGTTAAGTGGATGATGGAGATTGTAGAAATGGAGAAGCAAACTGATTATACATGTTATCCGGAGTATGTTACTGAATGGCAAAAGCTTATGAATAATCTGGGTGGATTTCTCCATGGAGTCCTGGAGGATGAGCACAAACCTCCTAGCTTTGTTGTGGACGATATTGGCATGGTTGAAGTTGAAGTTTTTAGGCAGTACCCGCGGGATATTTTATCTGAAGCTTTTGACTTGAAAATGCGGATGATTGCATATTGGAAGGTCGTTCTGAGAAGGCTCGTTGATTCCATGGCATTGCATTTGCAGCTAAGTATTGCCAATCTTGTGAACAAGGACATGGAGATGAAGATTGTTACAGAATTAATGGGACCGAATAATGCAGGTGGAATTGAGAAGATGCTGGAAGAGTCTCCGTCAGTAGCATTGAAGCGTGAGAAGCTGAAAAAGAGCATCAACAAGCTTAAAGAATCCAAGGAGGTTGTGGGTAAGAATATGGATGGCATTATCACGTATGGTGATTAA

Protein Analysis

411

Amino Acids

46.93

Weight (kDa)

6.41

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 1 - 269 1.6e-51 Dynamin central region
GED PF02212 312 - 400 5.4e-11 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 1085
AccII CGCG 1 cut(s) 919
AccIII TCCGGA 1 cut(s) 775
AciI CCGC 5 cut(s) 375, 517, 917, 919, 955
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 6 cut(s) 144, 208, 318, 335, 505, 558
AcuI CTGAAG 3 cut(s) 429, 644, 954
AfaI GTAC 3 cut(s) 347, 493, 914
AflIII ACRYGT 1 cut(s) 767
AgsI TTSAA 6 cut(s) 149, 389, 893, 899, 949, 1141
AjnI CCWGG 2 cut(s) 164, 837
AleI CACNNNNGTG 1 cut(s) 423
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 1 cut(s) 1128
AlwI GGATC 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 775
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 1 cut(s) 1018
ApoI RAATTY 6 cut(s) 144, 208, 318, 335, 505, 558
AseI ATTAAT 1 cut(s) 1076
AspS9I GGNCC 2 cut(s) 372, 1082
AvaII GGWCC 2 cut(s) 372, 1082
BalI TGGCCA 1 cut(s) 684
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 852
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 1030
BccI CCATC 3 cut(s) 422, 724, 1205
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 166, 839
BcoDI GTCTC 1 cut(s) 1128
BfaI CTAG 2 cut(s) 378, 861
BfuAI ACCTGC 1 cut(s) 1085
BisI GCNGC 1 cut(s) 1019
BlsI GCNGC 1 cut(s) 1020
Bme1390I CCNGG 2 cut(s) 166, 839
Bme18I GGWCC 2 cut(s) 372, 1082
BmgT120I GGNCC 2 cut(s) 372, 1082
BmiI GGNNCC 2 cut(s) 373, 1083
BmrFI CCNGG 2 cut(s) 166, 839
BmsI GCATC 3 cut(s) 447, 1101, 1173
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 1224
BsaJI CCNNGG 5 cut(s) 105, 829, 917, 1002, 1185
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 1007
BseAI TCCGGA 1 cut(s) 775
BseBI CCWGG 2 cut(s) 166, 839
BseDI CCNNGG 5 cut(s) 105, 829, 917, 1002, 1185
BseGI GGATG 6 cut(s) 76, 616, 732, 850, 963, 1216
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 3 cut(s) 168, 252, 974
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 53, 345
BseXI GCAGC 1 cut(s) 1030
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 852
BsiSI CCGG 1 cut(s) 776
BsiWI CGTACG 1 cut(s) 491
BslFI GGGAC 2 cut(s) 385, 1095
BsmAI GTCTC 1 cut(s) 1128
BsmFI GGGAC 2 cut(s) 385, 1095
BsnI GGCC 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 852
Bsp13I TCCGGA 1 cut(s) 775
Bsp143I GATC 4 cut(s) 180, 293, 693, 713
Bsp19I CCATGG 3 cut(s) 105, 829, 1002
BspACI CCGC 5 cut(s) 375, 517, 917, 919, 955
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 3 cut(s) 169, 253, 975
BspEI TCCGGA 1 cut(s) 775
BspFNI CGCG 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 373, 1083
BspMI ACCTGC 1 cut(s) 1085
BspPI GGATC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 1007
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 5 cut(s) 105, 829, 917, 1002, 1185
BssMI GATC 4 cut(s) 180, 293, 693, 713
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 4 cut(s) 105, 829, 1002, 1185
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 166, 839
Bst6I CTCTTC 1 cut(s) 1113
BstBAI YACGTR 1 cut(s) 1224
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 5 cut(s) 177, 261, 311, 983, 1022
BstDSI CCRYGG 4 cut(s) 105, 829, 917, 1002
BstF5I GGATG 6 cut(s) 76, 616, 732, 850, 963, 1216
BstFNI CGCG 1 cut(s) 919
BstKTI GATC 4 cut(s) 183, 296, 696, 716
BstMAI GTCTC 1 cut(s) 1128
BstMBI GATC 4 cut(s) 180, 293, 693, 713
BstMWI GCNNNNNNNGC 5 cut(s) 272, 677, 916, 1018, 1150
BstNI CCWGG 2 cut(s) 166, 839
BstNSI RCATGY 1 cut(s) 771
BstSCI CCNGG 2 cut(s) 164, 837
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 1 cut(s) 1030
BstV2I GAAGAC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 684
BtgI CCRYGG 4 cut(s) 105, 829, 917, 1002
BtsCI GGATG 6 cut(s) 76, 616, 732, 850, 963, 1216
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 1 cut(s) 1085
Cac8I GCNNGC 1 cut(s) 682
Cfr13I GGNCC 2 cut(s) 372, 1082
Cfr42I CCGCGG 1 cut(s) 920
Csp6I GTAC 3 cut(s) 346, 492, 913
CviAII CATG 9 cut(s) 106, 119, 280, 368, 768, 830, 886, 1003, 1051
CviQI GTAC 3 cut(s) 346, 492, 913
DdeI CTNAG 5 cut(s) 177, 261, 311, 983, 1022
DpnI GATC 4 cut(s) 182, 295, 695, 715
DpnII GATC 4 cut(s) 180, 293, 693, 713
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 1113
EarI CTCTTC 1 cut(s) 1113
Eco130I CCWWGG 4 cut(s) 105, 829, 1002, 1185
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 372, 1082
Eco57I CTGAAG 3 cut(s) 429, 644, 954
EcoRII CCWGG 2 cut(s) 164, 837
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 4 cut(s) 105, 829, 1002, 1185
ErhI CCWWGG 4 cut(s) 105, 829, 1002, 1185
FaeI CATG 9 cut(s) 109, 122, 283, 371, 771, 833, 889, 1006, 1054
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 2 cut(s) 385, 1095
FatI CATG 9 cut(s) 105, 118, 279, 367, 767, 829, 885, 1002, 1050
FauI CCCGC 3 cut(s) 524, 912, 924
Fnu4HI GCNGC 1 cut(s) 1019
FokI GGATG 6 cut(s) 63, 623, 739, 857, 970, 1223
Fsp4HI GCNGC 1 cut(s) 1019
FspBI CTAG 2 cut(s) 378, 861
GluI GCNGC 1 cut(s) 1019
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 776
Hin1II CATG 9 cut(s) 109, 122, 283, 371, 771, 833, 889, 1006, 1054
HindIII AAGCTT 3 cut(s) 800, 936, 1172
HinfI GANTC 7 cut(s) 305, 496, 574, 834, 998, 1121, 1181
HpaII CCGG 1 cut(s) 776
Hpy166II GTNNAC 2 cut(s) 874, 1042
Hpy188I TCNGA 7 cut(s) 58, 223, 409, 573, 643, 934, 984
Hpy188III TCNNGA 4 cut(s) 10, 184, 454, 776
Hpy8I GTNNAC 2 cut(s) 874, 1042
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 547, 967, 981
HpyCH4IV ACGT 2 cut(s) 490, 1223
HpyCH4V TGCA 9 cut(s) 142, 283, 418, 460, 541, 965, 1012, 1018, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 677, 916, 1018, 1150
HpyF3I CTNAG 5 cut(s) 177, 261, 311, 983, 1022
HpySE526I ACGT 2 cut(s) 490, 1223
Hsp92II CATG 9 cut(s) 109, 122, 283, 371, 771, 833, 889, 1006, 1054
Kpn2I TCCGGA 1 cut(s) 775
KspI CCGCGG 1 cut(s) 920
Kzo9I GATC 4 cut(s) 180, 293, 693, 713
LmnI GCTCC 2 cut(s) 168, 223
Lsp1109I GCAGC 1 cut(s) 1030
LweI GCATC 3 cut(s) 447, 1101, 1173
MaeI CTAG 2 cut(s) 378, 861
MaeII ACGT 2 cut(s) 490, 1223
MaeIII GTNAC 2 cut(s) 784, 1066
MalI GATC 4 cut(s) 182, 295, 695, 715
MboI GATC 4 cut(s) 180, 293, 693, 713
MhlI GDGCHC 1 cut(s) 852
MlsI TGGCCA 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 3 cut(s) 505, 843, 1130
MmeI TCCRAC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 684
MroI TCCGGA 1 cut(s) 775
MscI TGGCCA 1 cut(s) 684
MseI TTAA 5 cut(s) 396, 720, 1076, 1176, 1234
MslI CAYNNNNRTG 3 cut(s) 366, 423, 1055
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 2 cut(s) 166, 839
MvaI CCWGG 2 cut(s) 166, 839
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 5 cut(s) 272, 677, 916, 1018, 1150
NcoI CCATGG 3 cut(s) 105, 829, 1002
NdeII GATC 4 cut(s) 180, 293, 693, 713
NlaIII CATG 9 cut(s) 109, 122, 283, 371, 771, 833, 889, 1006, 1054
NlaIV GGNNCC 2 cut(s) 373, 1083
NspI RCATGY 1 cut(s) 771
OliI CACNNNNGTG 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 1085
PciI ACATGT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PfeI GAWTC 4 cut(s) 305, 574, 998, 1181
Pfl23II CGTACG 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 1 cut(s) 1020
PleI GAGTC 3 cut(s) 504, 842, 1129
PpsI GAGTC 3 cut(s) 504, 842, 1129
Ppu21I YACGTR 1 cut(s) 1224
PscI ACATGT 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 1076
Psp6I CCWGG 2 cut(s) 164, 837
PspGI CCWGG 2 cut(s) 164, 837
PspLI CGTACG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 373, 1083
PspPI GGNCC 2 cut(s) 372, 1082
RsaI GTAC 3 cut(s) 347, 493, 914
RsaNI GTAC 3 cut(s) 346, 492, 913
RseI CAYNNNNRTG 3 cut(s) 366, 423, 1055
SacII CCGCGG 1 cut(s) 920
SaqAI TTAA 5 cut(s) 396, 720, 1076, 1176, 1234
SatI GCNGC 1 cut(s) 1019
Sau3AI GATC 4 cut(s) 180, 293, 693, 713
Sau96I GGNCC 2 cut(s) 372, 1082
SchI GAGTC 3 cut(s) 505, 843, 1130
ScrFI CCNGG 2 cut(s) 166, 839
SduI GDGCHC 1 cut(s) 852
SfaNI GCATC 3 cut(s) 447, 1101, 1173
Sfr303I CCGCGG 1 cut(s) 920
SgrBI CCGCGG 1 cut(s) 920
SinI GGWCC 2 cut(s) 372, 1082
SmiMI CAYNNNNRTG 3 cut(s) 366, 423, 1055
SsiI CCGC 5 cut(s) 375, 517, 917, 919, 955
SspMI CTAG 2 cut(s) 378, 861
StyD4I CCNGG 2 cut(s) 164, 837
StyI CCWWGG 4 cut(s) 105, 829, 1002, 1185
TaiI ACGT 2 cut(s) 493, 1226
TaqI TCGA 4 cut(s) 299, 563, 577, 606
TaqII GACCGA 1 cut(s) 1099
TfiI GAWTC 4 cut(s) 305, 574, 998, 1181
Tru1I TTAA 5 cut(s) 396, 720, 1076, 1176, 1234
Tru9I TTAA 5 cut(s) 396, 720, 1076, 1176, 1234
TscAI CASTG 1 cut(s) 526
TseI GCWGC 1 cut(s) 1018
TspDTI ATGAA 7 cut(s) 107, 240, 268, 647, 719, 821, 1073
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 1 cut(s) 526
VpaK11BI GGWCC 2 cut(s) 372, 1082
VspI ATTAAT 1 cut(s) 1076
XapI RAATTY 6 cut(s) 144, 208, 318, 335, 505, 558
XceI RCATGY 1 cut(s) 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 1192
XspI CTAG 2 cut(s) 378, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.