Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000365

Physical Location & Seq

Genomic Coordinates Reverse (-)

8994232 .. 8995823

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTGATCACCAAGTCGAGAGCGTTGTCGTAAGCGTTGCATCACAACCAGGATCCAGTTCCGAAGGTACGGACGGGCAACGCTCAGATATTCGGACTCTAATTAAGAAATCATTGTCAACAGATACAACTTCAATTAAGATTGCATTGTCAGCACTTAAATATTCCCTTGCAGATATATGGGTACCATTGGGACGTCATGTTTGGGGGGCAATTGTAGGTAAAATCGAGGTGAATCTCAGTATGCGACAACGGAGGGAACTACTAGTGACATTAGTTCCCCATATGGTTCTCTGTTTGACCATGACATTTCTTCTGCCCATCAGTTTTCTGCGGAAACTGATATTAATAACAGGGAATTTTCTGCCTAATACGCGGGAAAGGATACTACTTGCAATATCTTGTATTGGGTTGTTAGTGGATCCTTTGTTCTTTTACATTCCATTCATCGATGAGAAAAGAAAGTGTATTGGAATGGACAAAAAGTTAAGGGATGTAGTTCTTGCATTGCGATCACTTACAGATCTCGCTTTCGCACTCCATACTGATGCTCAGATTCGTGATCTGACTGACGTGCCCTCCGACCCCTTCGACTTTGAGTATGAGGATATCGTGTATAGGGGTTTAAAGTGGATATCTCAAGATATCATAATCGAGGTCCTTCCTATTCTTCCCATCCAACAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

229

Amino Acids

25.8

Weight (kDa)

6.43

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60500 AT1G60530
fragaria_vesca	FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica	MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica	Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis	pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis	RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata	RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora	Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa	Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha	Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana	Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	199
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	334, 376
AclWI	GGATC	4 cut(s)	48, 61, 416, 429
AcsI	RAATTY	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	2 cut(s)	70, 186
AgsI	TTSAA	1 cut(s)	135
AhlI	ACTAGT	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	49
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AlwI	GGATC	4 cut(s)	48, 61, 416, 429
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	1 cut(s)	579
BamHI	GGATCC	2 cut(s)	53, 421
BanI	GGYRCC	1 cut(s)	184
BccI	CCATC	2 cut(s)	329, 683
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	1 cut(s)	7
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	378
BglII	AGATCT	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	3 cut(s)	55, 186, 423
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	50, 538
BpuEI	CTTGAG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	450
BseGI	GGATG	2 cut(s)	499, 675
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	99, 253, 566
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	184
BshVI	ATCGAT	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
BspACI	CCGC	2 cut(s)	334, 376
BspCNI	CTCAG	3 cut(s)	98, 252, 565
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	55, 186, 423
BspPI	GGATC	4 cut(s)	48, 61, 416, 429
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	85, 239, 552
BstF5I	GGATG	2 cut(s)	499, 675
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	6 cut(s)	10, 56, 424, 515, 526, 565
BstMBI	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 373
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	1 cut(s)	376
BstX2I	RGATCY	3 cut(s)	53, 421, 523
BstYI	RGATCY	3 cut(s)	53, 421, 523
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	499, 675
Cfr13I	GGNCC	1 cut(s)	658
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	69, 185
CviAII	CATG	2 cut(s)	200, 304
CviQI	GTAC	2 cut(s)	69, 185
DdeI	CTNAG	3 cut(s)	85, 239, 552
DpnI	GATC	6 cut(s)	9, 55, 423, 514, 525, 564
DpnII	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
DraI	TTTAAA	1 cut(s)	627
Eco32I	GATATC	3 cut(s)	610, 636, 646
Eco47I	GGWCC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	3 cut(s)	610, 636, 646
FaeI	CATG	2 cut(s)	203, 307
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	2 cut(s)	199, 303
FauI	CCCGC	1 cut(s)	369
FauNDI	CATATG	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	506, 662
FspBI	CTAG	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	203, 307
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	97, 235, 556
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	7 cut(s)	7, 64, 88, 96, 555, 567, 583
Hpy188III	TCNNGA	3 cut(s)	19, 560, 641
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	59, 598, 671
HpyCH4IV	ACGT	2 cut(s)	196, 573
HpyCH4V	TGCA	5 cut(s)	41, 146, 173, 395, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 373
HpyF3I	CTNAG	3 cut(s)	85, 239, 552
HpySE526I	ACGT	2 cut(s)	196, 573
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	203, 307
KpnI	GGTACC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
LpnPI	CCDG	5 cut(s)	36, 63, 70, 339, 668
LweI	GCATC	2 cut(s)	50, 538
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	196, 573
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	6 cut(s)	9, 55, 423, 514, 525, 564
MboI	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
MboII	GAAGA	2 cut(s)	305, 662
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	3 cut(s)	53, 421, 523
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	4 cut(s)	102, 135, 213, 358
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	5 cut(s)	223, 249, 589, 598, 649
MseI	TTAA	6 cut(s)	105, 138, 159, 347, 488, 626
MslI	CAYNNNNRTG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	152, 373
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
NlaIII	CATG	2 cut(s)	203, 307
NlaIV	GGNNCC	3 cut(s)	55, 186, 423
NmuCI	GTSAC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	235, 556
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	658
PshBI	ATTAAT	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	55, 186, 423
PspPI	GGNCC	1 cut(s)	658
PspPPI	RGGWCCY	1 cut(s)	658
PsuI	RGATCY	3 cut(s)	53, 421, 523
RsaI	GTAC	2 cut(s)	70, 186
RsaNI	GTAC	2 cut(s)	69, 185
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	6 cut(s)	105, 138, 159, 347, 488, 626
Sau3AI	GATC	6 cut(s)	7, 53, 421, 512, 523, 562
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	579
SetI	ASST	7 cut(s)	70, 199, 223, 234, 576, 660, 687
SfaNI	GCATC	2 cut(s)	50, 538
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	639
SmoI	CTYRAG	1 cut(s)	639
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	4 cut(s)	102, 135, 213, 358
SsiI	CCGC	2 cut(s)	334, 376
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	49
TaiI	ACGT	2 cut(s)	199, 576
TaqI	TCGA	5 cut(s)	18, 228, 450, 591, 654
TasI	AATT	4 cut(s)	102, 135, 213, 358
TfiI	GAWTC	2 cut(s)	235, 556
Tru1I	TTAA	6 cut(s)	105, 138, 159, 347, 488, 626
Tru9I	TTAA	6 cut(s)	105, 138, 159, 347, 488, 626
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	2 cut(s)	86, 268
VpaK11BI	GGWCC	1 cut(s)	658
VspI	ATTAAT	1 cut(s)	347
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	1 cut(s)	266
ZraI	GACGTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.