Rmu_sc0004240.1_g000006
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004240.1
Physical Location & Seq
Forward (+)
18401 .. 18916
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004240.1_g000006.1.cds

Sequence Viewer

Length: 516 bp
atgaaagaaaggtcagttcagtggatgatggagccagtggaaatggagaacctgactgattatacatgtaatccagaatatgtatccgaatgtagtaggcttatgggtcaacaaggcacatttatacatttggtgttaaatgaaaaccactctacgatctatgtagagggtattggggaagttcaagttggagtccttgggcagtatcctcaagttctctctcaggctttcgacttgaaaatgaggatgactgcctattggaaagttgttctgggaaggcttgttgattgtatggctttgcatttgcagttgagtgtttcgaaacttgtgaaccaagagatggagagtgagattgtgaatgagttgatgggaccaaattgtggtggtgggattgagaaaatgctggaggaatctccagcagttgccatcaagcgcgagaagctgattaagagcataaaaaagctcagggattccaaagaggttgttgctaagatcttggatggtgttgctacctaa

Protein Analysis

171

Amino Acids

19.27

Weight (kDa)

5.3

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60500 AT1G60530
fragaria_vesca FvH4_4g34670 FvH4_7g03430 FvH4_7g03440 FvH4_7g03780
malus_domestica MD02G1282600.v1.1 MD02G1282700.v1.1 MD02G1282900.v1.1 MD14G1008400.v1.1 MD14G1008800.v1.1 MD14G1008900.v1.1 MD14G1009000.v1.1 MD14G1009200.v1.1 MD14G1009300.v1.1
prunus_persica Prupe.2G039500_v2.0.a1 Prupe.2G039600_v2.0.a1 Prupe.2G039800_v2.0.a1 Prupe.2G039900_v2.0.a1 Prupe.2G040000_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015100_v2.0.a1 Prupe.7G015300_v2.0.a1
pyrus_communis pycom02g24110 pycom02g24120 pycom14g00720 pycom14g00740 pycom14g00780
rosa_chinensis RchiOBHm_Chr1g0325781 RchiOBHm_Chr1g0326171 RchiOBHm_Chr1g0326211 RchiOBHm_Chr1g0327001 RchiOBHm_Chr1g0327051 RchiOBHm_Chr1g0327071 RchiOBHm_Chr1g0327091 RchiOBHm_Chr1g0327111 RchiOBHm_Chr2g0127731 RchiOBHm_Chr2g0127741 RchiOBHm_Chr4g0444021
rosa_laevigata RLG00000005864 RLG00000005866 RLG00000030044 RLG00000030045 RLG00000030047 RLG00000030048 RLG00000030083 RLG00000030106
rosa_multiflora Rmu_sc0000795.1_g000013 Rmu_sc0000795.1_g000046 Rmu_sc0000795.1_g000049 Rmu_sc0004240.1_g000005 Rmu_sc0004240.1_g000006 Rmu_sc0006009.1_g000005 Rmu_sc0015522.1_g000011 Rmu_sc0025852.1_g000001
rosa_roxburghii Rroxscaffold_4G00323340 Rroxscaffold_4G00323420 Rroxscaffold_4G00323950 Rroxscaffold_4G00324390 Rroxscaffold_5G00384590
rosa_rugosa Rorug01G0054400 Rorug01G0057700 Rorug01G0062800 Rorug01G0062900 Rorug01G0063200 Rorug01G0063300 Rorug04G0349000
rosa_samantha Rh1AG069900 Rh1AG070200 Rh1AG070400 Rh1AG070700 Rh1AG071000 Rh1AG074600 Rh1AG079800 Rh1AG080000 Rh1AG080600 Rh1BG057600 Rh1BG060000 Rh1BG064000 Rh1CG070400 Rh1CG073100 Rh1CG077500 Rh1CG077600 Rh1CG078000 Rh1CG078600 Rh1DG075100 Rh1DG079900 Rh1DG084000 Rh1DG084100 Rh1DG084400 Rh1DG084900 Rh1DG085000 Rh2BG332700 Rh4AG409800 Rh4BG420900 Rh4CG435200 Rh4DG416100
rosa_wichuraiana Rw1G005780 Rw1G005990 Rw1G006330 Rw1G006340 Rw1G006380 Rw1G006390 Rw2G026260 Rw4G035200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 340, 380
AccII CGCG 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 340, 380
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 185, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 442, 463
AluI AGCT 2 cut(s) 442, 463
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 371
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 371
BccI CCATC 5 cut(s) 22, 334, 361, 434, 494
BciVI GTATCC 2 cut(s) 94, 216
BfuI GTATCC 2 cut(s) 94, 216
BglII AGATCT 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 33, 372
BpmI CTGGAG 2 cut(s) 399, 425
Bpu10I CCTNAGC 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 380
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 30, 252, 505
BseLI CCNNNNNNNGG 2 cut(s) 340, 380
BseMII CTCAG 2 cut(s) 236, 478
BseNI ACTGG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 340, 380
BsmFI GGGAC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 156, 492
BspCNI CTCAG 2 cut(s) 235, 477
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 2 cut(s) 33, 372
BspT104I TTCGAA 1 cut(s) 320
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 156, 492
BssT1I CCWWGG 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 222, 464, 489
BstF5I GGATG 3 cut(s) 30, 252, 505
BstFNI CGCG 1 cut(s) 435
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 2 cut(s) 159, 495
BstMBI GATC 2 cut(s) 156, 492
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 69
BstUI CGCG 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuI GTATCC 2 cut(s) 94, 216
BtsCI GGATG 3 cut(s) 30, 252, 505
BtsIMutI CAGTG 2 cut(s) 26, 42
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 371
CviAII CATG 1 cut(s) 66
CviJI RGCY 7 cut(s) 34, 100, 227, 280, 296, 442, 463
CviKI_1 RGCY 7 cut(s) 34, 100, 227, 280, 296, 442, 463
DdeI CTNAG 3 cut(s) 222, 464, 489
DpnI GATC 2 cut(s) 158, 494
DpnII GATC 2 cut(s) 156, 492
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 69
FaiI YATR 8 cut(s) 63, 67, 81, 104, 125, 162, 293, 455
FaqI GGGAC 1 cut(s) 384
FatI CATG 1 cut(s) 65
FokI GGATG 3 cut(s) 37, 259, 512
GlaI GCGC 1 cut(s) 434
GsuI CTGGAG 2 cut(s) 399, 425
HhaI GCGC 1 cut(s) 435
Hin1II CATG 1 cut(s) 69
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 3 cut(s) 192, 410, 470
Hpy166II GTNNAC 2 cut(s) 110, 331
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 110, 331
HpyAV CCTTC 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 301, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 3 cut(s) 222, 464, 489
Hsp92II CATG 1 cut(s) 69
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 156, 492
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 48, 65, 87, 209, 257, 389, 429, 451
MalI GATC 2 cut(s) 158, 494
MboI GATC 2 cut(s) 156, 492
MflI RGATCY 1 cut(s) 492
MluCI AATT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 5 cut(s) 160, 219, 237, 400, 472
MseI TTAA 2 cut(s) 137, 447
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 2 cut(s) 156, 492
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 2 cut(s) 33, 372
NspI RCATGY 1 cut(s) 69
NspV TTCGAA 1 cut(s) 320
PciI ACATGT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 410, 470
PflMI CCANNNNNTGG 2 cut(s) 340, 380
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 33, 372
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 492
SaqAI TTAA 2 cut(s) 137, 447
Sau3AI GATC 2 cut(s) 156, 492
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 201
SetI ASST 6 cut(s) 14, 54, 444, 465, 483, 515
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 1 cut(s) 376
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 2 cut(s) 231, 320
TasI AATT 1 cut(s) 376
TfiI GAWTC 2 cut(s) 410, 470
Tru1I TTAA 2 cut(s) 137, 447
Tru9I TTAA 2 cut(s) 137, 447
TscAI CASTG 2 cut(s) 26, 42
TspDTI ATGAA 2 cut(s) 17, 156
TspRI CASTG 2 cut(s) 26, 42
Van91I CCANNNNNTGG 2 cut(s) 340, 380
VpaK11BI GGWCC 1 cut(s) 371
XceI RCATGY 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.