Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

10087106 .. 10089260

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTTGTTGATGACCCTTCTCTACACACCTTGAAACGCAGACGACTCGAGATCACCGATTCCATGGAAGCTTCTTCTTCAGCTCAGGCTAAAATTGCTGATATGCGAGAGAAATTAGGGCGAGAGGTTCGTGTTTTCGAGACTTCGAGTATCTCACAGAGACCAAGTCAAGTTTCTAGTGCTGACGATGAATCTGATGATTTCTACGAGTTCACACCTGCAGATTTTTACCGCCTTTTGGCTACTAAGAAAGAAGATAAATCGTTGAAGACAAGAAAAATCCGGGAAGCAGAAGAAGCTGCTCGTCGATCAAAGCTCACTAAGGCTGTAATCCGGGTTCGTTTTCCTGATAATCACACATTGGAGGCAACATTTCATCCATCAGAAAAGATCCAAGGCTTGATTGATCTTGTCAAAAGAGTAGTTGCCCACCCAGATGTTCCTTTCTACTTGTATACAACTCCTCCCAAGAAACAGATAAAAGATTTCTCACAAGACTTCTACTCAGCTGGGTTTGTTCCTGGAGCCATTGTCTACTTTTCAAACGATCAACCTAAAGATGATGGTGGTAGTTCAACTCCTTATCTTAATGAAGAGATTTTGTCACTGAAAGATTTAGAGGCCATGACCAAAGCCGTGGAACCGGTTGAATCGTCATCAGAGCCAGCCACGGTTGACTCTAGTGCTGTACCTGTTGAACACGAGCGTAAATCCACAGAGAAGAAGACCACAAAGCCTAAGTGGTTTAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

251

Amino Acids

28.5

Weight (kDa)

6.27

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	107 - 162	1.8e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AccI	GTMKAC	2 cut(s)	455, 534
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	6 cut(s)	34, 268, 543, 576, 650, 698
AjnI	CCWGG	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	5 cut(s)	71, 83, 299, 316, 509
AluI	AGCT	5 cut(s)	71, 83, 299, 316, 509
Alw26I	GTCTC	2 cut(s)	134, 154
AlwI	GGATC	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	299
AsiGI	ACCGGT	1 cut(s)	643
AsuC2I	CCSGG	2 cut(s)	284, 335
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	47
BauI	CACGAG	1 cut(s)	701
BbsI	GAAGAC	2 cut(s)	275, 731
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	388, 557
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	522
BcnI	CCSGG	2 cut(s)	284, 335
BcoDI	GTCTC	2 cut(s)	134, 154
BfaI	CTAG	2 cut(s)	177, 681
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	3 cut(s)	284, 335, 522
BmeT110I	CYCGRG	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	526, 642
BmrFI	CCNGG	3 cut(s)	284, 335, 522
BpiI	GAAGAC	2 cut(s)	275, 731
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	284, 335
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	4 cut(s)	63, 394, 636, 669
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	4 cut(s)	448, 478, 516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	4 cut(s)	63, 394, 636, 669
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	98, 519
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	509
BshFI	GGCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	283, 334, 644
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	134, 154
BsnI	GGCC	1 cut(s)	623
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	47
Bsp143I	GATC	5 cut(s)	51, 308, 390, 406, 547
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	2 cut(s)	97, 518
BspLI	GGNNCC	2 cut(s)	526, 642
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	643
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	4 cut(s)	63, 394, 636, 669
BssMI	GATC	5 cut(s)	51, 308, 390, 406, 547
BssNAI	GTATAC	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	701
BssT1I	CCWWGG	2 cut(s)	63, 394
Bst1107I	GTATAC	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	701
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	5 cut(s)	84, 246, 321, 505, 738
BstDSI	CCRYGG	3 cut(s)	63, 636, 669
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	5 cut(s)	54, 311, 393, 409, 550
BstMAI	GTCTC	2 cut(s)	134, 154
BstMBI	GATC	5 cut(s)	51, 308, 390, 406, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 296
BstNI	CCWGG	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	282, 333, 520
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	2 cut(s)	275, 731
BstX2I	RGATCY	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	390
BstZ17I	GTATAC	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	623
BtgI	CCRYGG	3 cut(s)	63, 636, 669
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	689
CspAI	ACCGGT	1 cut(s)	643
CviAII	CATG	2 cut(s)	64, 625
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	5 cut(s)	84, 246, 321, 505, 738
DpnI	GATC	5 cut(s)	53, 310, 392, 408, 549
DpnII	GATC	5 cut(s)	51, 308, 390, 406, 547
DraI	TTTAAA	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	63, 394
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	63, 394
ErhI	CCWWGG	2 cut(s)	63, 394
FaeI	CATG	2 cut(s)	67, 628
FaiI	YATR	4 cut(s)	65, 104, 456, 626
FatI	CATG	2 cut(s)	63, 624
FblI	GTMKAC	2 cut(s)	455, 534
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	177, 681
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	3 cut(s)	283, 334, 644
Hin1II	CATG	2 cut(s)	67, 628
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	5 cut(s)	45, 59, 191, 650, 677
HpaII	CCGG	3 cut(s)	283, 334, 644
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	213, 456, 535, 676
Hpy188I	TCNGA	3 cut(s)	196, 385, 661
Hpy188III	TCNNGA	3 cut(s)	49, 139, 347
Hpy8I	GTNNAC	4 cut(s)	213, 456, 535, 676
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 296
HpyF3I	CTNAG	5 cut(s)	84, 246, 321, 505, 738
Hsp92II	CATG	2 cut(s)	67, 628
Kzo9I	GATC	5 cut(s)	51, 308, 390, 406, 547
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	177, 681
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	5 cut(s)	53, 310, 392, 408, 549
MboI	GATC	5 cut(s)	51, 308, 390, 406, 547
MboII	GAAGA	8 cut(s)	66, 69, 266, 280, 305, 605, 733, 736
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	2 cut(s)	93, 113
MlyI	GAGTC	2 cut(s)	39, 671
MnlI	CCTC	4 cut(s)	118, 358, 474, 613
MseI	TTAA	2 cut(s)	588, 747
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	283, 334, 644
MspR9I	CCNGG	3 cut(s)	284, 335, 522
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	2 cut(s)	95, 296
NciI	CCSGG	2 cut(s)	284, 335
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	51, 308, 390, 406, 547
NlaIII	CATG	2 cut(s)	67, 628
NlaIV	GGNNCC	2 cut(s)	526, 642
NmuCI	GTSAC	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	47
PaqCI	CACCTGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	59, 191, 650
PflFI	GACNNNGTC	1 cut(s)	165
PfoI	TCCNGGA	2 cut(s)	282, 520
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	2 cut(s)	39, 671
PpsI	GAGTC	2 cut(s)	39, 671
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	526, 642
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	588, 747
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	51, 308, 390, 406, 547
SchI	GAGTC	2 cut(s)	39, 671
ScrFI	CCNGG	3 cut(s)	284, 335, 522
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	93, 113
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	2 cut(s)	177, 681
StyD4I	CCNGG	3 cut(s)	282, 333, 520
StyI	CCWWGG	2 cut(s)	63, 394
TaaI	ACNGT	1 cut(s)	673
TaqI	TCGA	4 cut(s)	48, 138, 146, 307
TasI	AATT	2 cut(s)	93, 113
TfiI	GAWTC	3 cut(s)	59, 191, 650
Tru1I	TTAA	2 cut(s)	588, 747
Tru9I	TTAA	2 cut(s)	588, 747
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	3 cut(s)	204, 365, 606
TspRI	CASTG	1 cut(s)	612
Tth111I	GACNNNGTC	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	2 cut(s)	455, 534
XspI	CTAG	2 cut(s)	177, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.