RLG00000022266

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001373
Physical Location & Seq
Reverse (-)
82088029 .. 82089419
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022266

Sequence Viewer

Length: 1023 bp
ATGGAACACCGAGCGCCGAATCTCCCACCACCCAAGTCTCCTGCCGGCTCATCATCTTCTGAAGAAGATTCTGAAGAAGGACCCTGGACCATTCTCAATCACATTCCTCCGGGTCCAGGCGAAGACCGTATGGTTCGCCAAGAAAGAGTCTTTCTTTTTCAGGGAAATCCAAGAACCGAACCCAGAGTGTTGCATCTGTTCTCCGATGGGAGTTTCAGTCTTCAGAATAAGGCTTGTCCCTCTCGATTAGACCAACTTGAATTGGTTGGGCATTCTAGAGGACAAGTCTGTTTTCGAAATCTAAGCCAGAGACAGATCATGGTTTGGGATTTGGAAGCTCAGAGAGTAAGGAAAGTGCTTGATGATGTGACCGAGGGAGGAGAATCGTCCTATGGATTCGGGCACAGAAACGGGGGCTTATTCATGGTGGTTAGACTTGGACGCCAACCTCTATTTCACAACATGCAGGATTACGGATACTACCTCCATACCTTTATCGAGAGAGAAAGAGAACAGTGGACCAGAGTTGAGTTTAGGTTGGAGGCTCTGTATGATTTTAGAACCTTTGGACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGCACAACGTGCTTACATTATTACATATGATTTACAGACTGAACTAGTTGGCCGCTTGGTAGCCCCTGGAGAAGATCGTCTTAATAATGTGGAGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTGGCTGCAGAAGGTGGTGCAATCAATCTTCTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGATACCAGCCAAGAAGCGGGTTAATCCATTAGCTGATGCGGAGTTCAGGAGAGTACCTGTACCCTCAGCCATACCTTCAGGCATGAAAATGCAGCTTGGATCCCGTAGGATGTTTCAAGCAACTCCACTTGTGAAGCCTATGGGAAACAGGGCACTTGCAGAGGACAATAACACAGATGATGATGATGAAGGTATTGCTTTCGCTCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.43

Weight (kDa)

6.23

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AciI CCGC 4 cut(s) 614, 673, 826, 848
AclWI GGATC 2 cut(s) 903, 916
AcoI YGGCCR 1 cut(s) 670
AcuI CTGAAG 4 cut(s) 81, 93, 206, 870
AcyI GRCGYC 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 2 cut(s) 864, 870
AfiI CCNNNNNNNGG 2 cut(s) 116, 825
AgsI TTSAA 3 cut(s) 260, 736, 926
AhlI ACTAGT 1 cut(s) 664
AjnI CCWGG 3 cut(s) 83, 115, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 3 cut(s) 338, 842, 904
AluI AGCT 3 cut(s) 338, 842, 904
Alw21I GWGCWC 2 cut(s) 625, 783
Alw26I GTCTC 3 cut(s) 42, 304, 589
Alw44I GTGCAC 2 cut(s) 621, 779
AlwI GGATC 2 cut(s) 903, 916
AoxI GGCC 2 cut(s) 670, 724
ApaLI GTGCAC 2 cut(s) 621, 779
ApeKI GCWGC 2 cut(s) 749, 901
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 6 cut(s) 80, 87, 113, 519, 569, 724
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 628
AsuII TTCGAA 1 cut(s) 295
AvaII GGWCC 5 cut(s) 80, 87, 113, 519, 569
BaeGI GKGCMC 4 cut(s) 405, 625, 783, 964
BamHI GGATCC 1 cut(s) 908
BauI CACGAG 1 cut(s) 776
BbsI GAAGAC 2 cut(s) 129, 212
Bbv12I GWGCWC 2 cut(s) 625, 783
BbvCI CCTCAGC 1 cut(s) 874
BbvI GCAGC 2 cut(s) 736, 913
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 3 cut(s) 85, 117, 687
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 42, 304, 589
BcuI ACTAGT 1 cut(s) 664
BfaI CTAG 2 cut(s) 276, 665
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 580
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 3 cut(s) 673, 750, 902
BlsI GCNGC 3 cut(s) 674, 751, 903
Bme1390I CCNGG 4 cut(s) 85, 111, 117, 687
Bme18I GGWCC 5 cut(s) 80, 87, 113, 519, 569
BmgT120I GGNCC 6 cut(s) 80, 87, 113, 519, 569, 724
BmiI GGNNCC 3 cut(s) 82, 114, 910
BmrFI CCNGG 4 cut(s) 85, 111, 117, 687
BmsI GCATC 2 cut(s) 202, 835
BpiI GAAGAC 2 cut(s) 129, 212
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 874
Bpu14I TTCGAA 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 4 cut(s) 83, 372, 685, 727
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 825
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 611, 750
BseBI CCWGG 3 cut(s) 85, 117, 687
BseDI CCNNGG 4 cut(s) 83, 372, 685, 727
BseGI GGATG 1 cut(s) 924
BseLI CCNNNNNNNGG 2 cut(s) 116, 825
BseMII CTCAG 3 cut(s) 353, 602, 888
BseNI ACTGG 2 cut(s) 611, 750
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 4 cut(s) 405, 625, 783, 964
BseXI GCAGC 2 cut(s) 736, 913
BseYI CCCAGC 1 cut(s) 721
BshFI GGCC 2 cut(s) 672, 726
BsiHKAI GWGCWC 2 cut(s) 625, 783
BsiSI CCGG 2 cut(s) 45, 110
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 116, 825
BsmAI GTCTC 3 cut(s) 42, 304, 589
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 672, 726
Bso31I GGTCTC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 4 cut(s) 405, 625, 783, 964
Bsp143I GATC 3 cut(s) 315, 694, 908
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 4 cut(s) 614, 673, 826, 848
BspANI GGCC 2 cut(s) 672, 726
BspCNI CTCAG 3 cut(s) 352, 601, 887
BspLI GGNNCC 3 cut(s) 82, 114, 910
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 903, 916
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 2 cut(s) 611, 750
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 4 cut(s) 83, 372, 685, 727
BssMI GATC 3 cut(s) 315, 694, 908
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 727
Bst2BI CACGAG 1 cut(s) 776
Bst2UI CCWGG 3 cut(s) 85, 117, 687
Bst4CI ACNGT 2 cut(s) 128, 516
BstACI GRCGYC 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 46, 599
BstDEI CTNAG 4 cut(s) 302, 339, 588, 874
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 1 cut(s) 924
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 318, 697, 911
BstMAI GTCTC 3 cut(s) 42, 304, 589
BstMBI GATC 3 cut(s) 315, 694, 908
BstMWI GCNNNNNNNGC 2 cut(s) 620, 629
BstNI CCWGG 3 cut(s) 85, 117, 687
BstNSI RCATGY 2 cut(s) 466, 601
BstSCI CCNGG 4 cut(s) 83, 109, 115, 685
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 4 cut(s) 405, 625, 783, 964
BstV1I GCAGC 2 cut(s) 736, 913
BstV2I GAAGAC 2 cut(s) 129, 212
BstX2I RGATCY 1 cut(s) 908
BstYI RGATCY 1 cut(s) 908
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 672, 726
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 1 cut(s) 924
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 46, 599
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 6 cut(s) 80, 87, 113, 519, 569, 724
CseI GACGC 1 cut(s) 450
Csp6I GTAC 2 cut(s) 863, 869
CviAII CATG 6 cut(s) 319, 424, 463, 598, 728, 892
CviQI GTAC 2 cut(s) 863, 869
DdeI CTNAG 4 cut(s) 302, 339, 588, 874
DpnI GATC 3 cut(s) 317, 696, 910
DpnII GATC 3 cut(s) 315, 694, 908
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 5 cut(s) 80, 87, 113, 519, 569
Eco57I CTGAAG 4 cut(s) 81, 93, 206, 870
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 3 cut(s) 83, 115, 685
EcoT14I CCWWGG 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 6 cut(s) 322, 427, 466, 601, 731, 895
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 222
FatI CATG 6 cut(s) 318, 423, 462, 597, 727, 891
FauI CCCGC 1 cut(s) 819
FauNDI CATATG 2 cut(s) 646, 807
Fnu4HI GCNGC 3 cut(s) 673, 750, 902
FokI GGATG 1 cut(s) 931
Fsp4HI GCNGC 3 cut(s) 673, 750, 902
FspBI CTAG 2 cut(s) 276, 665
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 673, 750, 902
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 2 cut(s) 672, 726
HapII CCGG 2 cut(s) 45, 110
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 6 cut(s) 322, 427, 466, 601, 731, 895
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 5 cut(s) 19, 68, 147, 383, 396
HpaII CCGG 2 cut(s) 45, 110
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 4 cut(s) 519, 623, 743, 781
Hpy188I TCNGA 6 cut(s) 61, 73, 205, 225, 342, 591
Hpy188III TCNNGA 5 cut(s) 243, 276, 499, 856, 1016
Hpy8I GTNNAC 4 cut(s) 519, 623, 743, 781
HpyAV CCTTC 4 cut(s) 71, 749, 894, 992
HpyCH4III ACNGT 2 cut(s) 128, 516
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 9 cut(s) 193, 466, 623, 752, 764, 781, 805, 901, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 629
HpyF3I CTNAG 4 cut(s) 302, 339, 588, 874
HpySE526I ACGT 1 cut(s) 628
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 6 cut(s) 322, 427, 466, 601, 731, 895
HspAI GCGC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 315, 694, 908
Lsp1109I GCAGC 2 cut(s) 736, 913
LweI GCATC 2 cut(s) 202, 835
MaeI CTAG 2 cut(s) 276, 665
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 367
MalI GATC 3 cut(s) 317, 696, 910
MboI GATC 3 cut(s) 315, 694, 908
MboII GAAGA 8 cut(s) 48, 74, 77, 86, 134, 212, 704, 764
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 4 cut(s) 405, 625, 783, 964
MluCI AATT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 519
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 2 cut(s) 702, 831
MslI CAYNNNNRTG 1 cut(s) 896
MspI CCGG 2 cut(s) 45, 110
MspR9I CCNGG 4 cut(s) 85, 111, 117, 687
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 3 cut(s) 85, 117, 687
MwoI GCNNNNNNNGC 2 cut(s) 620, 629
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 727
NdeI CATATG 2 cut(s) 646, 807
NdeII GATC 3 cut(s) 315, 694, 908
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 6 cut(s) 322, 427, 466, 601, 731, 895
NlaIV GGNNCC 3 cut(s) 82, 114, 910
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 466, 601
NspV TTCGAA 1 cut(s) 295
PaeI GCATGC 1 cut(s) 601
PctI GAATGC 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 4 cut(s) 19, 68, 383, 396
PkrI GCNGC 3 cut(s) 674, 751, 903
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 3 cut(s) 83, 115, 685
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 3 cut(s) 83, 115, 685
PspN4I GGNNCC 3 cut(s) 82, 114, 910
PspPI GGNCC 6 cut(s) 80, 87, 113, 519, 569, 724
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 2 cut(s) 864, 870
RsaNI GTAC 2 cut(s) 863, 869
RseI CAYNNNNRTG 1 cut(s) 896
SaqAI TTAA 2 cut(s) 702, 831
SatI GCNGC 3 cut(s) 673, 750, 902
Sau3AI GATC 3 cut(s) 315, 694, 908
Sau96I GGNCC 6 cut(s) 80, 87, 113, 519, 569, 724
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 4 cut(s) 85, 111, 117, 687
SduI GDGCHC 4 cut(s) 405, 625, 783, 964
SfaNI GCATC 2 cut(s) 202, 835
SfcI CTRYAG 1 cut(s) 750
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 5 cut(s) 80, 87, 113, 519, 569
SmiMI CAYNNNNRTG 1 cut(s) 896
SpeI ACTAGT 1 cut(s) 664
SphI GCATGC 1 cut(s) 601
Sse9I AATT 1 cut(s) 260
SsiI CCGC 4 cut(s) 614, 673, 826, 848
SspMI CTAG 2 cut(s) 276, 665
StyD4I CCNGG 4 cut(s) 83, 109, 115, 685
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 128, 516
TaiI ACGT 1 cut(s) 631
TaqI TCGA 3 cut(s) 244, 295, 498
TaqII GACCGA 1 cut(s) 386
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 4 cut(s) 19, 68, 383, 396
Tru1I TTAA 2 cut(s) 702, 831
Tru9I TTAA 2 cut(s) 702, 831
TscAI CASTG 1 cut(s) 521
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 749, 901
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 412, 908, 1011
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 521
VneI GTGCAC 2 cut(s) 621, 779
VpaK11BI GGWCC 5 cut(s) 80, 87, 113, 519, 569
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 2 cut(s) 466, 601
XspI CTAG 2 cut(s) 276, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.