Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

80303486 .. 80306357

Gene Structure 2872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG630500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATCTTTGATTCTTCTTCTAAAAGAAGGAGGGTCACCAACATTAATAGCATGGAGGCCGAAGAAGCCAAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTTGGCAGAGAAATTCGTGTTTTTGAAACGGCAGCATCTTCTTCTTCGCAAAATGTAGAGTCCAATACTGAGGAGCCAGATGACCTTTATGAGTTCACTGCTGAGGATTATTATCGGATAATGAATACCAAGAAGGAAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTTATGAAAGTGGTTGCTCGACCAGAATTATCATTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCGATTGTATATTTTTCATATGATATTCCAAAAGGTGATGATGCTGCAGATGTCAAGTCAGGTCCTTTCCTCCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGTGAAAGAGCATGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCCGAGAAAAAATCTGTTAAGCCAAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

246

Amino Acids

28.0

Weight (kDa)

7.82

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	101 - 158	6.1e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	125, 601
AjnI	CCWGG	1 cut(s)	502
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	79, 284, 381, 457
AluI	AGCT	4 cut(s)	79, 284, 381, 457
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	3 cut(s)	57, 72, 348
ApeKI	GCWGC	4 cut(s)	86, 131, 281, 551
ApoI	RAATTY	1 cut(s)	111
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	28, 554
AvaII	GGWCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	662
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	98, 143, 293, 538
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	727
BisI	GCNGC	4 cut(s)	87, 132, 282, 552
BlsI	GCNGC	4 cut(s)	88, 133, 283, 553
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	174, 669
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	143, 538
Bpu10I	CCTNAGC	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	159, 192
BseRI	GAGGAG	2 cut(s)	185, 435
BseXI	GCAGC	4 cut(s)	98, 143, 293, 538
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	59, 74, 350
BshNI	GGYRCC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	59, 74, 350
Bsp143I	GATC	4 cut(s)	3, 312, 388, 588
BspANI	GGCC	3 cut(s)	59, 74, 350
BspCNI	CTCAG	2 cut(s)	160, 193
BspLI	GGNNCC	2 cut(s)	174, 669
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	4 cut(s)	3, 312, 388, 588
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	286, 493, 627, 699
BstDEI	CTNAG	3 cut(s)	168, 201, 450
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	4 cut(s)	6, 315, 391, 591
BstMBI	GATC	4 cut(s)	3, 312, 388, 588
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	4 cut(s)	98, 143, 293, 538
BsuRI	GGCC	3 cut(s)	59, 74, 350
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	4 cut(s)	286, 493, 627, 699
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	569
CviAII	CATG	4 cut(s)	52, 469, 592, 626
DdeI	CTNAG	3 cut(s)	168, 201, 450
DpnI	GATC	4 cut(s)	5, 314, 390, 590
DpnII	GATC	4 cut(s)	3, 312, 388, 588
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	55, 472, 595, 629
FatI	CATG	4 cut(s)	51, 468, 591, 625
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	87, 132, 282, 552
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	4 cut(s)	87, 132, 282, 552
GluI	GCNGC	4 cut(s)	87, 132, 282, 552
HaeIII	GGCC	3 cut(s)	59, 74, 350
Hin1II	CATG	4 cut(s)	55, 472, 595, 629
HinfI	GANTC	2 cut(s)	11, 158
HphI	GGTGA	2 cut(s)	28, 554
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	4 cut(s)	216, 367, 378, 642
Hpy188III	TCNNGA	3 cut(s)	247, 329, 608
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	21, 226
HpyCH4V	TGCA	3 cut(s)	554, 629, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
HpyF3I	CTNAG	3 cut(s)	168, 201, 450
Hsp92II	CATG	4 cut(s)	55, 472, 595, 629
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	3, 312, 388, 588
LmnI	GCTCC	2 cut(s)	172, 505
Lsp1109I	GCAGC	4 cut(s)	98, 143, 293, 538
LweI	GCATC	2 cut(s)	143, 538
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	4 cut(s)	5, 314, 390, 590
MboI	GATC	4 cut(s)	3, 312, 388, 588
MboII	GAAGA	8 cut(s)	6, 9, 74, 129, 132, 135, 248, 703
MluCI	AATT	3 cut(s)	111, 372, 419
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	24, 49, 163, 196, 262, 340, 456, 587, 658
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	45, 717
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	6 cut(s)	65, 278, 497, 506, 631, 727
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	4 cut(s)	3, 312, 388, 588
NlaIII	CATG	4 cut(s)	55, 472, 595, 629
NlaIV	GGNNCC	2 cut(s)	174, 669
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	88, 133, 283, 553
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	174, 669
PspPI	GGNCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	45, 717
SatI	GCNGC	4 cut(s)	87, 132, 282, 552
Sau3AI	GATC	4 cut(s)	3, 312, 388, 588
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	143, 538
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	569
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	3 cut(s)	111, 372, 419
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	412
TasI	AATT	3 cut(s)	111, 372, 419
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	45, 717
Tru9I	TTAA	2 cut(s)	45, 717
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	4 cut(s)	86, 131, 281, 551
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	236, 347, 413, 513
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	569
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.