Tether containing UBX domain for
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 818 |
| Acc36I | ACCTGC | 1 cut(s) | 219 |
| Acc65I | GGTACC | 1 cut(s) | 1509 |
| AccB1I | GGYRCC | 2 cut(s) | 139, 1509 |
| AciI | CCGC | 3 cut(s) | 226, 639, 806 |
| AclWI | GGATC | 2 cut(s) | 1758, 1771 |
| AcoI | YGGCCR | 1 cut(s) | 1390 |
| AcsI | RAATTY | 1 cut(s) | 120 |
| AcuI | CTGAAG | 3 cut(s) | 299, 1514, 1860 |
| AcyI | GRCGYC | 1 cut(s) | 1129 |
| AfaI | GTAC | 6 cut(s) | 942, 1109, 1236, 1453, 1511, 1692 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1439, 1773, 1794 |
| AgsI | TTSAA | 5 cut(s) | 541, 848, 947, 1367, 1633 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1224 |
| AhlI | ACTAGT | 1 cut(s) | 1553 |
| AjnI | CCWGG | 4 cut(s) | 321, 442, 1220, 1766 |
| AluBI | AGCT | 8 cut(s) | 88, 397, 565, 702, 1411, 1448, 1525, 1759 |
| AluI | AGCT | 8 cut(s) | 88, 397, 565, 702, 1411, 1448, 1525, 1759 |
| Alw26I | GTCTC | 5 cut(s) | 73, 905, 991, 1325, 1371 |
| AlwI | GGATC | 2 cut(s) | 1758, 1771 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 322, 575 |
| Ama87I | CYCGRG | 1 cut(s) | 1184 |
| AoxI | GGCC | 6 cut(s) | 30, 81, 288, 967, 1244, 1390 |
| ApeKI | GCWGC | 6 cut(s) | 95, 221, 1408, 1415, 1418, 1489 |
| ApoI | RAATTY | 1 cut(s) | 120 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 957, 989, 1324, 1356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 312 |
| Asp718I | GGTACC | 1 cut(s) | 1509 |
| AspLEI | GCGC | 1 cut(s) | 799 |
| AspS9I | GGNCC | 3 cut(s) | 509, 774, 1681 |
| AsuHPI | GGTGA | 5 cut(s) | 494, 603, 720, 779, 1358 |
| AsuII | TTCGAA | 1 cut(s) | 132 |
| AvaI | CYCGRG | 1 cut(s) | 1184 |
| AvaII | GGWCC | 3 cut(s) | 509, 774, 1681 |
| AxyI | CCTNAGG | 1 cut(s) | 1741 |
| BaeGI | GKGCMC | 2 cut(s) | 1092, 1833 |
| BalI | TGGCCA | 1 cut(s) | 1392 |
| BamHI | GGATCC | 1 cut(s) | 1763 |
| BanI | GGYRCC | 2 cut(s) | 139, 1509 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1557, 1589 |
| BauI | CACGAG | 1 cut(s) | 1711 |
| BbsI | GAAGAC | 2 cut(s) | 816, 1608 |
| BbvI | GCAGC | 6 cut(s) | 107, 233, 1402, 1420, 1430, 1476 |
| BccI | CCATC | 7 cut(s) | 306, 310, 887, 1108, 1295, 1633, 1747 |
| BceAI | ACGGC | 3 cut(s) | 108, 153, 1649 |
| BciT130I | CCWGG | 4 cut(s) | 323, 444, 1222, 1768 |
| BciVI | GTATCC | 1 cut(s) | 196 |
| BcoDI | GTCTC | 5 cut(s) | 73, 905, 991, 1325, 1371 |
| BcuI | ACTAGT | 1 cut(s) | 1553 |
| BfaI | CTAG | 3 cut(s) | 761, 971, 1554 |
| BfmI | CTRYAG | 4 cut(s) | 492, 747, 1416, 1437 |
| BfuAI | ACCTGC | 1 cut(s) | 219 |
| BfuI | GTATCC | 1 cut(s) | 196 |
| BisI | GCNGC | 6 cut(s) | 96, 222, 1409, 1416, 1419, 1490 |
| BlsI | GCNGC | 6 cut(s) | 97, 223, 1410, 1417, 1420, 1491 |
| Bme1390I | CCNGG | 4 cut(s) | 323, 444, 1222, 1768 |
| Bme18I | GGWCC | 3 cut(s) | 509, 774, 1681 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1224 |
| BmeT110I | CYCGRG | 1 cut(s) | 1184 |
| BmgT120I | GGNCC | 3 cut(s) | 509, 774, 1681 |
| BmiI | GGNNCC | 4 cut(s) | 141, 1511, 1765, 1778 |
| BmrFI | CCNGG | 4 cut(s) | 323, 444, 1222, 1768 |
| BmrI | ACTGGG | 1 cut(s) | 1107 |
| BmsI | GCATC | 3 cut(s) | 617, 941, 1684 |
| BmuI | ACTGGG | 1 cut(s) | 1107 |
| BpiI | GAAGAC | 2 cut(s) | 816, 1608 |
| BpmI | CTGGAG | 3 cut(s) | 786, 1525, 1789 |
| Bpu14I | TTCGAA | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 3 cut(s) | 929, 1015, 1523 |
| BsaAI | YACGTR | 1 cut(s) | 940 |
| BsaHI | GRCGYC | 1 cut(s) | 1129 |
| BsaJI | CCNNGG | 7 cut(s) | 10, 78, 770, 870, 1393, 1578, 1684 |
| BsaWI | WCCGGW | 1 cut(s) | 589 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 370, 400, 889, 907, 919, 937 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1439, 1773, 1794 |
| Bse1I | ACTGG | 3 cut(s) | 1102, 1356, 1542 |
| Bse21I | CCTNAGG | 1 cut(s) | 1741 |
| BseBI | CCWGG | 4 cut(s) | 323, 444, 1222, 1768 |
| BseDI | CCNNGG | 7 cut(s) | 10, 78, 770, 870, 1393, 1578, 1684 |
| BseGI | GGATG | 1 cut(s) | 298 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1439, 1773, 1794 |
| BseMII | CTCAG | 2 cut(s) | 1326, 1755 |
| BseNI | ACTGG | 3 cut(s) | 1102, 1356, 1542 |
| BseRI | GAGGAG | 6 cut(s) | 27, 323, 375, 1216, 1786, 1793 |
| BseSI | GKGCMC | 2 cut(s) | 1092, 1833 |
| BseXI | GCAGC | 6 cut(s) | 107, 233, 1402, 1420, 1430, 1476 |
| BsgI | GTGCAG | 1 cut(s) | 570 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1814 |
| BshFI | GGCC | 6 cut(s) | 32, 83, 290, 969, 1246, 1392 |
| BshNI | GGYRCC | 2 cut(s) | 139, 1509 |
| BsiEI | CGRYCG | 1 cut(s) | 1814 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1184 |
| BsiSI | CCGG | 1 cut(s) | 590 |
| BslFI | GGGAC | 2 cut(s) | 1246, 1310 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1439, 1773, 1794 |
| BsmAI | GTCTC | 5 cut(s) | 73, 905, 991, 1325, 1371 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 2 cut(s) | 1246, 1310 |
| BsmI | GAATGC | 1 cut(s) | 1752 |
| BsnI | GGCC | 6 cut(s) | 32, 83, 290, 969, 1246, 1392 |
| BsoBI | CYCGRG | 1 cut(s) | 1184 |
| Bsp119I | TTCGAA | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1092, 1833 |
| Bsp1407I | TGTACA | 2 cut(s) | 1107, 1234 |
| Bsp143I | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| Bsp19I | CCATGG | 2 cut(s) | 1393, 1684 |
| BspACI | CCGC | 3 cut(s) | 226, 639, 806 |
| BspANI | GGCC | 6 cut(s) | 32, 83, 290, 969, 1246, 1392 |
| BspCNI | CTCAG | 2 cut(s) | 1327, 1754 |
| BspHI | TCATGA | 1 cut(s) | 336 |
| BspLI | GGNNCC | 4 cut(s) | 141, 1511, 1765, 1778 |
| BspMAI | CTGCAG | 2 cut(s) | 496, 1420 |
| BspMI | ACCTGC | 1 cut(s) | 219 |
| BspPI | GGATC | 2 cut(s) | 1758, 1771 |
| BspQI | GCTCTTC | 1 cut(s) | 1017 |
| BspT104I | TTCGAA | 1 cut(s) | 132 |
| BspT107I | GGYRCC | 2 cut(s) | 139, 1509 |
| BsrGI | TGTACA | 2 cut(s) | 1107, 1234 |
| BsrI | ACTGG | 3 cut(s) | 1102, 1356, 1542 |
| BssECI | CCNNGG | 7 cut(s) | 10, 78, 770, 870, 1393, 1578, 1684 |
| BssMI | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| BssNI | GRCGYC | 1 cut(s) | 1129 |
| BssSI | CACGAG | 1 cut(s) | 1711 |
| BssT1I | CCWWGG | 5 cut(s) | 78, 870, 1393, 1578, 1684 |
| Bst2BI | CACGAG | 1 cut(s) | 1711 |
| Bst2UI | CCWGG | 4 cut(s) | 323, 444, 1222, 1768 |
| Bst4CI | ACNGT | 4 cut(s) | 815, 905, 1033, 1514 |
| Bst6I | CTCTTC | 5 cut(s) | 28, 519, 697, 1017, 1836 |
| BstACI | GRCGYC | 1 cut(s) | 1129 |
| BstAUI | TGTACA | 2 cut(s) | 1107, 1234 |
| BstBAI | YACGTR | 1 cut(s) | 940 |
| BstBI | TTCGAA | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 7 cut(s) | 226, 433, 567, 606, 639, 1248, 1413 |
| BstDEI | CTNAG | 4 cut(s) | 390, 1146, 1335, 1741 |
| BstDSI | CCRYGG | 3 cut(s) | 770, 1393, 1684 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1437, 1771 |
| BstF5I | GGATG | 1 cut(s) | 298 |
| BstHHI | GCGC | 1 cut(s) | 799 |
| BstKTI | GATC | 5 cut(s) | 331, 531, 1614, 1766, 1814 |
| BstMAI | GTCTC | 5 cut(s) | 73, 905, 991, 1325, 1371 |
| BstMBI | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| BstMCI | CGRYCG | 1 cut(s) | 1814 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 571, 593, 803, 1756, 1828 |
| BstNI | CCWGG | 4 cut(s) | 323, 444, 1222, 1768 |
| BstNSI | RCATGY | 1 cut(s) | 884 |
| BstSCI | CCNGG | 4 cut(s) | 321, 442, 1220, 1766 |
| BstSFI | CTRYAG | 4 cut(s) | 492, 747, 1416, 1437 |
| BstSLI | GKGCMC | 2 cut(s) | 1092, 1833 |
| BstSNI | TACGTA | 1 cut(s) | 940 |
| BstV1I | GCAGC | 6 cut(s) | 107, 233, 1402, 1420, 1430, 1476 |
| BstV2I | GAAGAC | 2 cut(s) | 816, 1608 |
| BstX2I | RGATCY | 1 cut(s) | 1763 |
| BstYI | RGATCY | 1 cut(s) | 1763 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1741 |
| BsuI | GTATCC | 1 cut(s) | 196 |
| BsuRI | GGCC | 6 cut(s) | 32, 83, 290, 969, 1246, 1392 |
| BtgI | CCRYGG | 3 cut(s) | 770, 1393, 1684 |
| BtsCI | GGATG | 1 cut(s) | 298 |
| BtsIMutI | CAGTG | 1 cut(s) | 1549 |
| BveI | ACCTGC | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 7 cut(s) | 226, 433, 567, 606, 639, 1248, 1413 |
| CaiI | CAGNNNCTG | 2 cut(s) | 322, 575 |
| CciI | TCATGA | 1 cut(s) | 336 |
| CfoI | GCGC | 1 cut(s) | 799 |
| Cfr13I | GGNCC | 3 cut(s) | 509, 774, 1681 |
| CseI | GACGC | 1 cut(s) | 1137 |
| CsiI | ACCWGGT | 1 cut(s) | 1220 |
| Csp6I | GTAC | 6 cut(s) | 941, 1108, 1235, 1452, 1510, 1691 |
| CviAII | CATG | 9 cut(s) | 337, 409, 532, 881, 1111, 1381, 1394, 1685, 1703 |
| CviQI | GTAC | 6 cut(s) | 941, 1108, 1235, 1452, 1510, 1691 |
| DdeI | CTNAG | 4 cut(s) | 390, 1146, 1335, 1741 |
| DpnI | GATC | 5 cut(s) | 330, 530, 1613, 1765, 1813 |
| DpnII | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 818 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1224 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 818 |
| EaeI | YGGCCR | 1 cut(s) | 1390 |
| Eam1104I | CTCTTC | 5 cut(s) | 28, 519, 697, 1017, 1836 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1224 |
| EarI | CTCTTC | 5 cut(s) | 28, 519, 697, 1017, 1836 |
| Eco105I | TACGTA | 1 cut(s) | 940 |
| Eco130I | CCWWGG | 5 cut(s) | 78, 870, 1393, 1578, 1684 |
| Eco147I | AGGCCT | 2 cut(s) | 969, 1246 |
| Eco32I | GATATC | 2 cut(s) | 854, 1723 |
| Eco47I | GGWCC | 3 cut(s) | 509, 774, 1681 |
| Eco57I | CTGAAG | 3 cut(s) | 299, 1514, 1860 |
| Eco81I | CCTNAGG | 1 cut(s) | 1741 |
| Eco88I | CYCGRG | 1 cut(s) | 1184 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1437, 1771 |
| EcoO109I | RGGNCCY | 1 cut(s) | 509 |
| EcoRII | CCWGG | 4 cut(s) | 321, 442, 1220, 1766 |
| EcoRV | GATATC | 2 cut(s) | 854, 1723 |
| EcoT14I | CCWWGG | 5 cut(s) | 78, 870, 1393, 1578, 1684 |
| EcoT22I | ATGCAT | 1 cut(s) | 1010 |
| ErhI | CCWWGG | 5 cut(s) | 78, 870, 1393, 1578, 1684 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 9 cut(s) | 340, 412, 535, 884, 1114, 1384, 1397, 1688, 1706 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 825, 857 |
| FaqI | GGGAC | 2 cut(s) | 1246, 1310 |
| FatI | CATG | 9 cut(s) | 336, 408, 531, 880, 1110, 1380, 1393, 1684, 1702 |
| FauI | CCCGC | 2 cut(s) | 233, 646 |
| FauNDI | CATATG | 2 cut(s) | 466, 1255 |
| Fnu4HI | GCNGC | 6 cut(s) | 96, 222, 1409, 1416, 1419, 1490 |
| FokI | GGATG | 1 cut(s) | 285 |
| Fsp4HI | GCNGC | 6 cut(s) | 96, 222, 1409, 1416, 1419, 1490 |
| FspBI | CTAG | 3 cut(s) | 761, 971, 1554 |
| GlaI | GCGC | 1 cut(s) | 798 |
| GluI | GCNGC | 6 cut(s) | 96, 222, 1409, 1416, 1419, 1490 |
| GsuI | CTGGAG | 3 cut(s) | 786, 1525, 1789 |
| HaeIII | GGCC | 6 cut(s) | 32, 83, 290, 969, 1246, 1392 |
| HapII | CCGG | 1 cut(s) | 590 |
| HgaI | GACGC | 1 cut(s) | 1137 |
| HhaI | GCGC | 1 cut(s) | 799 |
| Hin1I | GRCGYC | 1 cut(s) | 1129 |
| Hin1II | CATG | 9 cut(s) | 340, 412, 535, 884, 1114, 1384, 1397, 1688, 1706 |
| Hin6I | GCGC | 1 cut(s) | 797 |
| HinP1I | GCGC | 1 cut(s) | 797 |
| HindIII | AAGCTT | 1 cut(s) | 1523 |
| HpaII | CCGG | 1 cut(s) | 590 |
| HphI | GGTGA | 5 cut(s) | 494, 603, 720, 779, 1358 |
| Hpy166II | GTNNAC | 3 cut(s) | 1349, 1549, 1691 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 307, 318, 582, 892, 983, 1840 |
| Hpy8I | GTNNAC | 3 cut(s) | 1349, 1549, 1691 |
| HpyAV | CCTTC | 6 cut(s) | 153, 527, 800, 1058, 1480, 1489 |
| HpyCH4III | ACNGT | 4 cut(s) | 815, 905, 1033, 1514 |
| HpyCH4IV | ACGT | 2 cut(s) | 939, 1195 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 571, 593, 803, 1756, 1828 |
| HpyF3I | CTNAG | 4 cut(s) | 390, 1146, 1335, 1741 |
| HpySE526I | ACGT | 2 cut(s) | 939, 1195 |
| Hsp92I | GRCGYC | 1 cut(s) | 1129 |
| Hsp92II | CATG | 9 cut(s) | 340, 412, 535, 884, 1114, 1384, 1397, 1688, 1706 |
| HspAI | GCGC | 1 cut(s) | 797 |
| KpnI | GGTACC | 1 cut(s) | 1513 |
| Kzo9I | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| LguI | GCTCTTC | 1 cut(s) | 1017 |
| LmnI | GCTCC | 4 cut(s) | 445, 707, 1607, 1756 |
| Lsp1109I | GCAGC | 6 cut(s) | 107, 233, 1402, 1420, 1430, 1476 |
| LweI | GCATC | 3 cut(s) | 617, 941, 1684 |
| MabI | ACCWGGT | 1 cut(s) | 1220 |
| MaeI | CTAG | 3 cut(s) | 761, 971, 1554 |
| MaeII | ACGT | 2 cut(s) | 939, 1195 |
| MaeIII | GTNAC | 2 cut(s) | 899, 1528 |
| MalI | GATC | 5 cut(s) | 330, 530, 1613, 1765, 1813 |
| MboI | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| MflI | RGATCY | 1 cut(s) | 1763 |
| MhlI | GDGCHC | 2 cut(s) | 1092, 1833 |
| MlsI | TGGCCA | 1 cut(s) | 1392 |
| MluCI | AATT | 3 cut(s) | 120, 359, 450 |
| MluNI | TGGCCA | 1 cut(s) | 1392 |
| MlyI | GAGTC | 3 cut(s) | 176, 870, 1458 |
| MmeI | TCCRAC | 1 cut(s) | 1178 |
| Mox20I | TGGCCA | 1 cut(s) | 1392 |
| Mph1103I | ATGCAT | 1 cut(s) | 1010 |
| MroXI | GAANNNNTTC | 1 cut(s) | 312 |
| MscI | TGGCCA | 1 cut(s) | 1392 |
| MseI | TTAA | 2 cut(s) | 1401, 1697 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 1344 |
| Msp20I | TGGCCA | 1 cut(s) | 1392 |
| MspA1I | CMGCKG | 2 cut(s) | 806, 1448 |
| MspI | CCGG | 1 cut(s) | 590 |
| MspR9I | CCNGG | 4 cut(s) | 323, 444, 1222, 1768 |
| Mva1269I | GAATGC | 1 cut(s) | 1752 |
| MvaI | CCWGG | 4 cut(s) | 323, 444, 1222, 1768 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 437, 446, 571, 593, 803, 1756, 1828 |
| NcoI | CCATGG | 2 cut(s) | 1393, 1684 |
| NdeI | CATATG | 2 cut(s) | 466, 1255 |
| NdeII | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| NlaIII | CATG | 9 cut(s) | 340, 412, 535, 884, 1114, 1384, 1397, 1688, 1706 |
| NlaIV | GGNNCC | 4 cut(s) | 141, 1511, 1765, 1778 |
| NmeAIII | GCCGAG | 1 cut(s) | 35 |
| NmuCI | GTSAC | 1 cut(s) | 1528 |
| NsiI | ATGCAT | 1 cut(s) | 1010 |
| NspI | RCATGY | 1 cut(s) | 884 |
| NspV | TTCGAA | 1 cut(s) | 132 |
| PaeR7I | CTCGAG | 1 cut(s) | 1184 |
| PagI | TCATGA | 1 cut(s) | 336 |
| PceI | AGGCCT | 2 cut(s) | 969, 1246 |
| PciSI | GCTCTTC | 1 cut(s) | 1017 |
| PctI | GAATGC | 1 cut(s) | 1752 |
| PdmI | GAANNNNTTC | 1 cut(s) | 312 |
| PfeI | GAWTC | 7 cut(s) | 17, 52, 686, 721, 1267, 1798, 1869 |
| PfoI | TCCNGGA | 1 cut(s) | 1766 |
| PkrI | GCNGC | 6 cut(s) | 97, 223, 1410, 1417, 1420, 1491 |
| Ple19I | CGATCG | 1 cut(s) | 1814 |
| PleI | GAGTC | 3 cut(s) | 175, 869, 1458 |
| PpsI | GAGTC | 3 cut(s) | 175, 869, 1458 |
| Ppu21I | YACGTR | 1 cut(s) | 940 |
| PpuMI | RGGWCCY | 1 cut(s) | 509 |
| Psp5II | RGGWCCY | 1 cut(s) | 509 |
| Psp6I | CCWGG | 4 cut(s) | 321, 442, 1220, 1766 |
| PspGI | CCWGG | 4 cut(s) | 321, 442, 1220, 1766 |
| PspN4I | GGNNCC | 4 cut(s) | 141, 1511, 1765, 1778 |
| PspPI | GGNCC | 3 cut(s) | 509, 774, 1681 |
| PspPPI | RGGWCCY | 1 cut(s) | 509 |
| PstI | CTGCAG | 2 cut(s) | 496, 1420 |
| PstNI | CAGNNNCTG | 2 cut(s) | 322, 575 |
| PsuI | RGATCY | 1 cut(s) | 1763 |
| PvuI | CGATCG | 1 cut(s) | 1814 |
| PvuII | CAGCTG | 1 cut(s) | 1448 |
| RsaI | GTAC | 6 cut(s) | 942, 1109, 1236, 1453, 1511, 1692 |
| RsaNI | GTAC | 6 cut(s) | 941, 1108, 1235, 1452, 1510, 1691 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 1344 |
| SapI | GCTCTTC | 1 cut(s) | 1017 |
| SaqAI | TTAA | 2 cut(s) | 1401, 1697 |
| SatI | GCNGC | 6 cut(s) | 96, 222, 1409, 1416, 1419, 1490 |
| Sau3AI | GATC | 5 cut(s) | 328, 528, 1611, 1763, 1811 |
| Sau96I | GGNCC | 3 cut(s) | 509, 774, 1681 |
| SchI | GAGTC | 3 cut(s) | 176, 870, 1458 |
| ScrFI | CCNGG | 4 cut(s) | 323, 444, 1222, 1768 |
| SduI | GDGCHC | 2 cut(s) | 1092, 1833 |
| SexAI | ACCWGGT | 1 cut(s) | 1220 |
| SfaNI | GCATC | 3 cut(s) | 617, 941, 1684 |
| SfcI | CTRYAG | 4 cut(s) | 492, 747, 1416, 1437 |
| Sfr274I | CTCGAG | 1 cut(s) | 1184 |
| SfuI | TTCGAA | 1 cut(s) | 132 |
| SinI | GGWCC | 3 cut(s) | 509, 774, 1681 |
| SlaI | CTCGAG | 1 cut(s) | 1184 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 1344 |
| SmlI | CTYRAG | 4 cut(s) | 908, 994, 1184, 1502 |
| SmoI | CTYRAG | 4 cut(s) | 908, 994, 1184, 1502 |
| SnaBI | TACGTA | 1 cut(s) | 940 |
| SpeI | ACTAGT | 1 cut(s) | 1553 |
| Sse9I | AATT | 3 cut(s) | 120, 359, 450 |
| SseBI | AGGCCT | 2 cut(s) | 969, 1246 |
| SsiI | CCGC | 3 cut(s) | 226, 639, 806 |
| SspMI | CTAG | 3 cut(s) | 761, 971, 1554 |
| StuI | AGGCCT | 2 cut(s) | 969, 1246 |
| StyD4I | CCNGG | 4 cut(s) | 321, 442, 1220, 1766 |
| StyI | CCWWGG | 5 cut(s) | 78, 870, 1393, 1578, 1684 |
| TaaI | ACNGT | 4 cut(s) | 815, 905, 1033, 1514 |
| TaiI | ACGT | 2 cut(s) | 942, 1198 |
| TaqI | TCGA | 6 cut(s) | 132, 352, 864, 1185, 1558, 1814 |
| TasI | AATT | 3 cut(s) | 120, 359, 450 |
| TatI | WGTACW | 2 cut(s) | 1107, 1234 |
| TfiI | GAWTC | 7 cut(s) | 17, 52, 686, 721, 1267, 1798, 1869 |
| Tru1I | TTAA | 2 cut(s) | 1401, 1697 |
| Tru9I | TTAA | 2 cut(s) | 1401, 1697 |
| TscAI | CASTG | 1 cut(s) | 1549 |
| TseFI | GTSAC | 1 cut(s) | 1528 |
| TseI | GCWGC | 6 cut(s) | 95, 221, 1408, 1415, 1418, 1489 |
| Tsp45I | GTSAC | 1 cut(s) | 1528 |
| TspDTI | ATGAA | 6 cut(s) | 15, 17, 353, 453, 1074, 1578 |
| TspGWI | ACGGA | 2 cut(s) | 787, 1620 |
| TspRI | CASTG | 1 cut(s) | 1549 |
| VpaK11BI | GGWCC | 3 cut(s) | 509, 774, 1681 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1437, 1771 |
| XapI | RAATTY | 1 cut(s) | 120 |
| XbaI | TCTAGA | 1 cut(s) | 760 |
| XceI | RCATGY | 1 cut(s) | 884 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1400 |
| XhoI | CTCGAG | 1 cut(s) | 1184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 312 |
| XspI | CTAG | 3 cut(s) | 761, 971, 1554 |
| Zsp2I | ATGCAT | 1 cut(s) | 1010 |