Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

26489483 .. 26492133

Gene Structure 2651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATCGTTGATGTTTCTTCTCAATTTTCCTTGAAACGAAGGAGGTTCACCAATATTGATCCCATGGAAGCTGAAGAAGCTAAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTCGGGAGAGAAATTCGTGTTTTTGAAACGTCAGCTGCTTCTTCTTCACAAACGGAGGAGTCTGTTACTGAGGAGACAGATGAATTTTTTGAGTTTACAGCAGAGGATTATTATCGGATTATGAATGCCAAAAAGGAAGATAAGGTTCTAAAAACACGAAAGCTTAAAGAGGCAGAACAGGCAGCCCGCAGGTCAAGGATAACAAAGACTGTGATCAGGGTTCGATTTCCTGATAATCACACGTTAGAGGCCACTTTTCATCCATCAGAAACAGTTCAGATCTTGGTTGATCTCCTCACGAAAGTAGTTGCTCGACCAGAATTACCATTCTACATATATACTACTCCTCCTAAGAAGCAGATAAAAGACACGTCACAGGATTTGTACTCTGCTGGCTTTGTTCCTGGTGCAATTGTGTATTTTTCATATAATATACCAAAAGCAGATGATGCTTCAGATGCCAAGTCAGGTCCCTTCCTTCAGGAAGAGATCATGTCTTTGAAAGGTTTGGAACTCCTCACTAAACATGCAGAGCCTGTTGAGTCTGCACCAGAAACGATACTAGAGGCATCACCTCCTGTTGTTCAAGAGAAGAAGCCTGCAGAGAAAAAACCTGTTAAGCCGAAGTGGCTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

251

Amino Acids

28.42

Weight (kDa)

6.88

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	123, 194
AcuI	CTGAAG	3 cut(s)	93, 549, 575
AfaI	GTAC	1 cut(s)	497
AflIII	ACRYGT	2 cut(s)	351, 480
AgsI	TTSAA	4 cut(s)	34, 137, 613, 698
AjiI	CACGTC	1 cut(s)	483
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	5 cut(s)	71, 80, 91, 146, 274
AluI	AGCT	5 cut(s)	71, 80, 91, 146, 274
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	84, 360
ApeKI	GCWGC	3 cut(s)	98, 146, 293
ApoI	RAATTY	2 cut(s)	123, 194
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	40, 675
AvaII	GGWCC	1 cut(s)	581
BbvI	GCAGC	3 cut(s)	110, 133, 305
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	739
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	3 cut(s)	99, 147, 294
BlsI	GCNGC	3 cut(s)	100, 148, 295
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	581
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	550, 559, 689
Bpu10I	CCTNAGC	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	5 cut(s)	182, 197, 395, 447, 617
BseXI	GCAGC	3 cut(s)	110, 133, 305
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	2 cut(s)	86, 362
BslFI	GGGAC	1 cut(s)	567
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	86, 362
Bsp143I	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	2 cut(s)	86, 362
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	583
BspMAI	CTGCAG	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	322, 385, 750
Bst6I	CTCTTC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	298, 505, 711
BstDEI	CTNAG	3 cut(s)	81, 180, 462
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	6 cut(s)	6, 61, 327, 393, 403, 603
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 290, 560, 569, 739
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	711
BstV1I	GCAGC	3 cut(s)	110, 133, 305
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	86, 362
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	370
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	298, 505, 711
CaiI	CAGNNNCTG	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	3 cut(s)	64, 604, 638
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	3 cut(s)	81, 180, 462
DpnI	GATC	6 cut(s)	5, 60, 326, 392, 402, 602
DpnII	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	3 cut(s)	93, 549, 575
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	67, 607, 641
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	63, 603, 637
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	99, 147, 294
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	99, 147, 294
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	3 cut(s)	99, 147, 294
HaeIII	GGCC	2 cut(s)	86, 362
Hin1II	CATG	3 cut(s)	67, 607, 641
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	170, 653
HphI	GGTGA	2 cut(s)	40, 675
Hpy166II	GTNNAC	2 cut(s)	48, 207
Hpy188I	TCNGA	4 cut(s)	228, 379, 390, 568
Hpy188III	TCNNGA	5 cut(s)	115, 341, 409, 593, 698
Hpy8I	GTNNAC	2 cut(s)	48, 207
HpyAV	CCTTC	3 cut(s)	33, 595, 599
HpyCH4III	ACNGT	3 cut(s)	322, 385, 750
HpyCH4IV	ACGT	3 cut(s)	140, 353, 482
HpyCH4V	TGCA	4 cut(s)	521, 641, 659, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 290, 560, 569, 739
HpyF3I	CTNAG	3 cut(s)	81, 180, 462
HpySE526I	ACGT	3 cut(s)	140, 353, 482
Hsp92II	CATG	3 cut(s)	67, 607, 641
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
Lsp1109I	GCAGC	3 cut(s)	110, 133, 305
LweI	GCATC	3 cut(s)	550, 559, 689
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	140, 353, 482
MaeIII	GTNAC	2 cut(s)	175, 483
MalI	GATC	6 cut(s)	5, 60, 326, 392, 402, 602
MboI	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
MboII	GAAGA	7 cut(s)	9, 86, 144, 147, 260, 608, 715
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	5 cut(s)	23, 123, 194, 431, 522
MlyI	GAGTC	2 cut(s)	179, 662
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	276, 729
MspA1I	CMGCKG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	516
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	5 cut(s)	77, 290, 560, 569, 739
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
NlaIII	CATG	3 cut(s)	67, 607, 641
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	483
NspI	RCATGY	1 cut(s)	641
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	100, 148, 295
PleI	GAGTC	2 cut(s)	178, 661
PpsI	GAGTC	2 cut(s)	178, 661
PpuMI	RGGWCCY	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	581
PspPPI	RGGWCCY	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SaqAI	TTAA	2 cut(s)	276, 729
SatI	GCNGC	3 cut(s)	99, 147, 294
Sau3AI	GATC	6 cut(s)	3, 58, 324, 390, 400, 600
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	2 cut(s)	179, 662
ScrFI	CCNGG	1 cut(s)	516
SfaNI	GCATC	3 cut(s)	550, 559, 689
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	581
Sse9I	AATT	5 cut(s)	23, 123, 194, 431, 522
SsiI	CCGC	1 cut(s)	298
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	322, 385, 750
TaiI	ACGT	3 cut(s)	143, 356, 485
TaqI	TCGA	2 cut(s)	334, 424
TasI	AATT	5 cut(s)	23, 123, 194, 431, 522
TatI	WGTACW	1 cut(s)	495
Tru1I	TTAA	2 cut(s)	276, 729
Tru9I	TTAA	2 cut(s)	276, 729
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	3 cut(s)	98, 146, 293
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	4 cut(s)	207, 248, 359, 525
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	123, 194
XceI	RCATGY	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.