FvH4_6g52820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001373
Physical Location & Seq
Reverse (-)
38813164 .. 38814727
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52820.t1

Sequence Viewer

Length: 1104 bp
ATGGAAGTCGGTGGCCAATTACGACCCAACTCTCCCGGCTCTGAGGAAGAAGAAGAAACGTGGCCGTGGACTGTTCTGAACCACATTCCTCAGGTTCCAACTGAAGACCGAATGCTTCGCGAAGAAAGAGTCTACCTTTTTCAGGGAAACCCAACAAACGCCCCCAAGCTTTTAAGATTGTTCGCCGATGGGAGTTTCTTTCATGAGCGCAAGGTTCGTCCCTCTGACACAGACGTGCTTGAAATGATTGGCCATTCTAGGGGTCTTGTATGCTTTAAAAATGCAAGCATGAGGCAGATATTGGTTTGGGATTTGCAACGTCAAAGAGTAAGGACAATTGTTGCGGAAGTGGATGAAGGAGGAGAATCAAGCTATGGCTTTGGCCACAGAAATGGGGTTTATATGATTGTTAGGCTGGGAAGGCCGGCTTTGTTTTACAATAGGCAGTATTTTGAGTACCACATCCATACTTTTGTTGAGGGACAGCAAGGACCCTGGACCAGATTTGAATTTCGGTTGGATGCTCACTTCAATTTCAGAACCGGTGGGACTGGAATATGGGTCTCCGAGAATGGCATGATGTATTGGAAAGCAGAGGAGCTTGATGGGGGTGCTTCCATTATCACATATAATTTGGAGACCCAACAATTGGACACCTTGGTAGCGCCTCGAGAGGATGAGTTTAATAACTCAGATATGGCCTTAGGCCATGGTTTTAAAGGGCAGCTCTCTGCATCTGTGTATGTGCCGCCTGCAGAGCATGATGACTACTCCATGTTACACATCTGGGTTTTGCAAAGAGAAGATCAGTCATTCTATCGGTGGCACAAGCTGGTTGCCTTCCGCTCCATTGTATTCAATGCAGATGATCTCTTCATCCCCCTTGTCTGCTACTATGGCAGGGAGGATGGGGCGATTCATATACTGCTCCACAGGAACAGGGAAGAAATTGTCTGTGTGATCCCAGCTAAAAAGCAGGTTCTACCAGTAGATGGTGCAGCATTTCAAGCAGCCCCAGCAGGCATCCTGGCCATCCCGTCTGGCATTGCTATGGAAGTTGCAGATGCAAGGAAATTCAAAGCGACACAGACTTCTAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

42.09

Weight (kDa)

5.74

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 39 - 310 2.2e-09 F-box associated beta propeller domain
FBA_3 PF08268 79 - 277 4.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 967
AccB7I CCANNNNNTGG 2 cut(s) 649, 992
AccBSI CCGCTC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 344, 749, 844
AclWI GGATC 1 cut(s) 955
AcoI YGGCCR 5 cut(s) 13, 62, 250, 382, 1029
AcsI RAATTY 2 cut(s) 509, 1073
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 4 cut(s) 142, 259, 649, 992
AgeI ACCGGT 1 cut(s) 542
AgsI TTSAA 6 cut(s) 242, 509, 532, 859, 1007, 1078
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 494, 1026
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 6 cut(s) 169, 372, 601, 727, 832, 968
AluI AGCT 6 cut(s) 169, 372, 601, 727, 832, 968
Alw26I GTCTC 2 cut(s) 568, 632
AlwI GGATC 1 cut(s) 955
Ama87I CYCGRG 1 cut(s) 669
AoxI GGCC 8 cut(s) 13, 62, 250, 382, 422, 699, 706, 1029
ApeKI GCWGC 3 cut(s) 724, 998, 1010
ApoI RAATTY 2 cut(s) 509, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AsiGI ACCGGT 1 cut(s) 542
AspLEI GCGC 2 cut(s) 210, 667
AspS9I GGNCC 2 cut(s) 491, 498
AsuC2I CCSGG 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 2 cut(s) 491, 498
AxyI CCTNAGG 2 cut(s) 90, 703
BalI TGGCCA 4 cut(s) 15, 252, 384, 1031
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 736, 1010, 1022
BccI CCATC 5 cut(s) 182, 599, 902, 986, 1040
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 496, 1028
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 568, 632
BfaI CTAG 2 cut(s) 258, 1095
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 967
BisI GCNGC 4 cut(s) 725, 749, 999, 1011
BlsI GCNGC 4 cut(s) 726, 750, 1000, 1012
Bme1390I CCNGG 3 cut(s) 36, 496, 1028
Bme18I GGWCC 2 cut(s) 491, 498
BmeT110I CYCGRG 1 cut(s) 669
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 491, 498
BmiI GGNNCC 2 cut(s) 96, 493
BmrFI CCNGG 3 cut(s) 36, 496, 1028
BmsI GCATC 4 cut(s) 511, 743, 1032, 1054
BpiI GAAGAC 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 36
BsaI GGTCTC 2 cut(s) 568, 632
BsaJI CCNNGG 4 cut(s) 65, 494, 657, 709
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 259, 649, 992
Bse118I RCCGGY 2 cut(s) 424, 542
Bse1I ACTGG 2 cut(s) 556, 986
Bse21I CCTNAGG 2 cut(s) 90, 703
Bse3DI GCAATG 1 cut(s) 1044
BseBI CCWGG 2 cut(s) 496, 1028
BseDI CCNNGG 4 cut(s) 65, 494, 657, 709
BseGI GGATG 8 cut(s) 358, 462, 526, 682, 876, 913, 1023, 1032
BseLI CCNNNNNNNGG 4 cut(s) 142, 259, 649, 992
BseMI GCAATG 1 cut(s) 1044
BseMII CTCAG 3 cut(s) 33, 104, 705
BseNI ACTGG 2 cut(s) 556, 986
BseRI GAGGAG 2 cut(s) 375, 611
BseXI GCAGC 3 cut(s) 736, 1010, 1022
BseYI CCCAGC 3 cut(s) 415, 964, 1015
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 8 cut(s) 15, 64, 252, 384, 424, 701, 708, 1031
BshTI ACCGGT 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 3 cut(s) 36, 425, 543
BslFI GGGAC 3 cut(s) 204, 495, 562
BslI CCNNNNNNNGG 4 cut(s) 142, 259, 649, 992
BsmAI GTCTC 2 cut(s) 568, 632
BsmFI GGGAC 3 cut(s) 204, 495, 562
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 8 cut(s) 15, 64, 252, 384, 424, 701, 708, 1031
Bso31I GGTCTC 2 cut(s) 568, 632
BsoBI CYCGRG 1 cut(s) 669
Bsp143I GATC 3 cut(s) 805, 868, 960
Bsp19I CCATGG 1 cut(s) 709
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 3 cut(s) 344, 749, 844
BspANI GGCC 8 cut(s) 15, 64, 252, 384, 424, 701, 708, 1031
BspCNI CTCAG 3 cut(s) 34, 103, 704
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 96, 493
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 967
BspPI GGATC 1 cut(s) 955
BspTNI GGTCTC 2 cut(s) 568, 632
BsrBI CCGCTC 1 cut(s) 846
BsrDI GCAATG 1 cut(s) 1044
BsrFI RCCGGY 2 cut(s) 424, 542
BsrI ACTGG 2 cut(s) 556, 986
BssAI RCCGGY 2 cut(s) 424, 542
BssECI CCNNGG 4 cut(s) 65, 494, 657, 709
BssMI GATC 3 cut(s) 805, 868, 960
BssT1I CCWWGG 2 cut(s) 657, 709
Bst2UI CCWGG 2 cut(s) 496, 1028
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 878
BstC8I GCNNGC 4 cut(s) 286, 426, 753, 1021
BstDEI CTNAG 4 cut(s) 42, 90, 691, 703
BstDSI CCRYGG 2 cut(s) 65, 709
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 8 cut(s) 358, 462, 526, 682, 876, 913, 1023, 1032
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 2 cut(s) 210, 667
BstKTI GATC 3 cut(s) 808, 871, 963
BstMAI GTCTC 2 cut(s) 568, 632
BstMBI GATC 3 cut(s) 805, 868, 960
BstMWI GCNNNNNNNGC 5 cut(s) 421, 757, 897, 1007, 1016
BstNI CCWGG 2 cut(s) 496, 1028
BstSCI CCNGG 3 cut(s) 34, 494, 1026
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 736, 1010, 1022
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 392
Bsu36I CCTNAGG 2 cut(s) 90, 703
BsuRI GGCC 8 cut(s) 15, 64, 252, 384, 424, 701, 708, 1031
BtgI CCRYGG 2 cut(s) 65, 709
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 8 cut(s) 358, 462, 526, 682, 876, 913, 1023, 1032
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 1 cut(s) 967
Cac8I GCNNGC 4 cut(s) 286, 426, 753, 1021
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 210, 667
Cfr10I RCCGGY 2 cut(s) 424, 542
Cfr13I GGNCC 2 cut(s) 491, 498
Csp6I GTAC 1 cut(s) 457
CspAI ACCGGT 1 cut(s) 542
CviAII CATG 6 cut(s) 203, 289, 577, 710, 761, 775
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 42, 90, 691, 703
DpnI GATC 3 cut(s) 807, 870, 962
DpnII GATC 3 cut(s) 805, 868, 960
DraI TTTAAA 2 cut(s) 277, 718
EaeI YGGCCR 5 cut(s) 13, 62, 250, 382, 1029
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
Eco130I CCWWGG 2 cut(s) 657, 709
Eco31I GGTCTC 2 cut(s) 568, 632
Eco47I GGWCC 2 cut(s) 491, 498
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 2 cut(s) 90, 703
Eco88I CYCGRG 1 cut(s) 669
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 494, 1026
EcoT14I CCWWGG 2 cut(s) 657, 709
ErhI CCWWGG 2 cut(s) 657, 709
FaeI CATG 6 cut(s) 206, 292, 580, 713, 764, 778
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 3 cut(s) 204, 495, 562
FatI CATG 6 cut(s) 202, 288, 576, 709, 760, 774
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 725, 749, 999, 1011
FokI GGATG 8 cut(s) 365, 449, 533, 689, 863, 920, 1010, 1019
Fsp4HI GCNGC 4 cut(s) 725, 749, 999, 1011
FspBI CTAG 2 cut(s) 258, 1095
GlaI GCGC 2 cut(s) 209, 666
GluI GCNGC 4 cut(s) 725, 749, 999, 1011
GsaI CCCAGC 3 cut(s) 419, 968, 1019
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 8 cut(s) 15, 64, 252, 384, 424, 701, 708, 1031
HapII CCGG 3 cut(s) 36, 425, 543
HhaI GCGC 2 cut(s) 210, 667
Hin1II CATG 6 cut(s) 206, 292, 580, 713, 764, 778
Hin6I GCGC 2 cut(s) 208, 665
HinP1I GCGC 2 cut(s) 208, 665
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 129, 365, 916
HpaII CCGG 3 cut(s) 36, 425, 543
Hpy166II GTNNAC 2 cut(s) 69, 133
Hpy188I TCNGA 6 cut(s) 43, 78, 226, 539, 568, 694
Hpy188III TCNNGA 3 cut(s) 119, 203, 671
Hpy8I GTNNAC 2 cut(s) 69, 133
HpyAV CCTTC 3 cut(s) 350, 414, 850
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 3 cut(s) 59, 234, 319
HpyCH4V TGCA 9 cut(s) 284, 316, 734, 755, 796, 863, 998, 1061, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 421, 757, 897, 1007, 1016
HpyF3I CTNAG 4 cut(s) 42, 90, 691, 703
HpySE526I ACGT 3 cut(s) 59, 234, 319
Hsp92II CATG 6 cut(s) 206, 292, 580, 713, 764, 778
HspAI GCGC 2 cut(s) 208, 665
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 805, 868, 960
LmnI GCTCC 3 cut(s) 598, 851, 933
Lsp1109I GCAGC 3 cut(s) 736, 1010, 1022
LweI GCATC 4 cut(s) 511, 743, 1032, 1054
MaeI CTAG 2 cut(s) 258, 1095
MaeII ACGT 3 cut(s) 59, 234, 319
MaeIII GTNAC 1 cut(s) 777
MalI GATC 3 cut(s) 807, 870, 962
MbiI CCGCTC 1 cut(s) 846
MboI GATC 3 cut(s) 805, 868, 960
MboII GAAGA 8 cut(s) 59, 62, 65, 116, 134, 815, 865, 956
MfeI CAATTG 2 cut(s) 336, 647
MlsI TGGCCA 4 cut(s) 15, 252, 384, 1031
MluCI AATT 8 cut(s) 17, 336, 509, 532, 631, 647, 948, 1073
MluNI TGGCCA 4 cut(s) 15, 252, 384, 1031
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 122, 498
Mox20I TGGCCA 4 cut(s) 15, 252, 384, 1031
MroNI GCCGGC 1 cut(s) 424
MscI TGGCCA 4 cut(s) 15, 252, 384, 1031
MseI TTAA 4 cut(s) 173, 276, 684, 717
MslI CAYNNNNRTG 3 cut(s) 233, 390, 1049
Msp20I TGGCCA 4 cut(s) 15, 252, 384, 1031
MspI CCGG 3 cut(s) 36, 425, 543
MspR9I CCNGG 3 cut(s) 36, 496, 1028
MunI CAATTG 2 cut(s) 336, 647
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 496, 1028
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 421, 757, 897, 1007, 1016
NaeI GCCGGC 1 cut(s) 426
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 709
NdeII GATC 3 cut(s) 805, 868, 960
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 6 cut(s) 206, 292, 580, 713, 764, 778
NlaIV GGNNCC 2 cut(s) 96, 493
NruI TCGCGA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 669
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 365, 916
PflMI CCANNNNNTGG 2 cut(s) 649, 992
PinAI ACCGGT 1 cut(s) 542
PkrI GCNGC 4 cut(s) 726, 750, 1000, 1012
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 494, 1026
PspFI CCCAGC 3 cut(s) 415, 964, 1015
PspGI CCWGG 2 cut(s) 494, 1026
PspN4I GGNNCC 2 cut(s) 96, 493
PspPI GGNCC 2 cut(s) 491, 498
PspPPI RGGWCCY 1 cut(s) 491
PstI CTGCAG 1 cut(s) 757
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 3 cut(s) 233, 390, 1049
SaqAI TTAA 4 cut(s) 173, 276, 684, 717
SatI GCNGC 4 cut(s) 725, 749, 999, 1011
Sau3AI GATC 3 cut(s) 805, 868, 960
Sau96I GGNCC 2 cut(s) 491, 498
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 3 cut(s) 36, 496, 1028
SfaNI GCATC 4 cut(s) 511, 743, 1032, 1054
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 491, 498
SlaI CTCGAG 1 cut(s) 669
SmiMI CAYNNNNRTG 3 cut(s) 233, 390, 1049
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
Sse9I AATT 8 cut(s) 17, 336, 509, 532, 631, 647, 948, 1073
SsiI CCGC 3 cut(s) 344, 749, 844
SspMI CTAG 2 cut(s) 258, 1095
StyD4I CCNGG 3 cut(s) 34, 494, 1026
StyI CCWWGG 2 cut(s) 657, 709
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 3 cut(s) 62, 237, 322
TaqI TCGA 1 cut(s) 670
TaqII GACCGA 1 cut(s) 123
TasI AATT 8 cut(s) 17, 336, 509, 532, 631, 647, 948, 1073
TauI GCSGC 1 cut(s) 751
TfiI GAWTC 2 cut(s) 365, 916
Tru1I TTAA 4 cut(s) 173, 276, 684, 717
Tru9I TTAA 4 cut(s) 173, 276, 684, 717
TseI GCWGC 3 cut(s) 724, 998, 1010
TspDTI ATGAA 4 cut(s) 191, 369, 865, 908
Van91I CCANNNNNTGG 2 cut(s) 649, 992
VpaK11BI GGWCC 2 cut(s) 491, 498
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 2 cut(s) 509, 1073
XhoI CTCGAG 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 258, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.