Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

87438064 .. 87446615

Gene Structure 8552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG658300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGAAACGCCGAGGAGGATCCTCTTCATCGGCCTCCGATTGTTCCAAGACGAATCTCCCACCACTCGTCTCTCTCCCCAAAGGCGAAGAAGCCAAGGCCAAGCTCACTGCAGCAAAAGAAAAGTTTGGGAGGGAAATTCGTGTTTTCGAAACGGCACCATCTTCTTCTTTGCAAAATGCAGAGTCCAATACTGTTTCATATCTGCAGGCTGTGATCAGGGTTTGCTTTCCTGATAATACAACATTAGAGGCCACTTTCCATCCATCAGAAACTCTTCAGAGCCTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCAGATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTCTACTCTGCTGGCTTCGCTCCTGGTGCAATTATATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCATGAAGAGATCATGTCTTTGAATGGTCTGGAACTTGTGAAAGAGCTTGCAGAGCCTGTTCAGACTGCACCGGAGGCTATACAGCAGGCATCACCCCCTGTTGTCCAAGAGAAGAAGCCCGCCAAGAAAAACCTTGTCTATCTCCCTAAAGGCGAACCCGTAGGAGAATCCTCTTCTTCCAGCTCCAATCGTTCCAAGACGAATCTCTCACCACTCATCTTTCTCCCTACAGGCATACCTCTAGAAGCACCACGGACCATTCTCAATCACCTTCCTGCGCCTCCAGCGGAAGACCGTATGGTCAGGAGAGAAAAAGTTTTTCTTTTTCAAGGATATCCAAGAGTGGAACCCAAGGTGTTGCATGTGTTTTCAGATGGGAGTTACAGTCTTGAGACAACAGCCCCTCCCTCTGCATCATACGTACTTGAACTCATTGGCTATTCCAAAGGCCTAGTCTGTTTCAGAAATCCAGACTTGAGACAGATATGCATTTGGGATTTGGAAGAGCAAACAGTAAGGGAGATGATTGATGATGTCAATGAAGAAGGAGAAGCCTCCTATGGATTTGGGCACAAAAATGGGGGTTTGTACATGATGGTCAGGCTTGGACGCCCACCTCACTCAAGTAAGAATCAAGATTTTATATGGTACTGTGATACTATTCTCGAGGGAGGACGTTGGAGGAGATCTGAGGTTACGGCCGCATGTCTTTTTGTACAGGGTAGACCTGCAACATATGTCTCCCAGAATCACAAAATGTATTGGAAAGCGACAACCGAAGATGGGGTTTGCATCATTGCCTTTGACTTAGAGACTGAGCATTTGGATGAATTGGTAGCCCCTCTTAAACCTAACAGAGACATGGTGCTTGGCCATTGGTTTAAGGGGCAGCTTGCTGCAGCAATCTATGAACTTGAGCGGTACCGTTGGCACAAGCTGGTCACTTTACCCTCCAGTGTTTACACTAGTGCAGATGAAGTCTTCATACCCTTGGTGTTCTACTATGGCAAGGAAGACGGAGCGATCAATCTTCTCTTTCACTGGAATATGATGGAAGTTTTGCATATCATACCAGCCGTGCATAAGCATCAGGACCATGGTGTACCATTAAATCATGGCTTCACGAGAGTAGATATCCCCTCTGCCATTCCCTTAGGAATGCAGATGGAGCTTGGATCCTGGAGGAGGTTCCAAGCAACCCCTCTTGGGAATCTCCTCCACCAATCGAAGAAGCACAACGGGCACGAATCTGAAGAGGACAAGAACAACAGAGGCAAGAGAATCATCAGGCTTTGTTGTGAAGATGATGATATAGGTATGGTATGGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

604

Amino Acids

67.82

Weight (kDa)

6.12

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	1216
Acc65I	GGTACC	1 cut(s)	1401
AccB1I	GGYRCC	2 cut(s)	154, 1401
AccBSI	CCGCTC	1 cut(s)	1399
AccI	GTMKAC	1 cut(s)	1204
AciI	CCGC	4 cut(s)	600, 767, 1182, 1399
AclWI	GGATC	4 cut(s)	12, 25, 1650, 1663
AcoI	YGGCCR	2 cut(s)	1179, 1351
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	2 cut(s)	260, 1752
AcyI	GRCGYC	1 cut(s)	1090
AfaI	GTAC	6 cut(s)	903, 1070, 1130, 1197, 1403, 1584
AfiI	CCNNNNNNNGG	3 cut(s)	1263, 1665, 1686
AgsI	TTSAA	3 cut(s)	502, 809, 908
AhlI	ACTAGT	1 cut(s)	1445
AjnI	CCWGG	3 cut(s)	282, 403, 1658
AluBI	AGCT	7 cut(s)	103, 358, 526, 663, 1372, 1417, 1651
AluI	AGCT	7 cut(s)	103, 358, 526, 663, 1372, 1417, 1651
Alw26I	GTCTC	6 cut(s)	73, 866, 952, 1225, 1286, 1332
AlwI	GGATC	4 cut(s)	12, 25, 1650, 1663
AlwNI	CAGNNNCTG	2 cut(s)	283, 536
Ama87I	CYCGRG	1 cut(s)	1145
AoxI	GGCC	6 cut(s)	30, 96, 249, 928, 1179, 1351
ApeKI	GCWGC	4 cut(s)	110, 1369, 1376, 1379
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	4 cut(s)	918, 950, 1285, 1317
Asp700I	GAANNNNTTC	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	1401
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	3 cut(s)	470, 735, 1573
AsuHPI	GGTGA	4 cut(s)	455, 564, 681, 740
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	1145
AvaII	GGWCC	3 cut(s)	470, 735, 1573
AxyI	CCTNAGG	1 cut(s)	1633
BaeGI	GKGCMC	2 cut(s)	1053, 1725
BalI	TGGCCA	1 cut(s)	1353
BamHI	GGATCC	2 cut(s)	17, 1655
BanI	GGYRCC	2 cut(s)	154, 1401
BarI	GAAGNNNNNNTAC	2 cut(s)	1449, 1481
BauI	CACGAG	1 cut(s)	1603
BbsI	GAAGAC	3 cut(s)	777, 1453, 1500
BbvI	GCAGC	4 cut(s)	122, 1363, 1381, 1391
BccI	CCATC	8 cut(s)	166, 267, 271, 848, 1069, 1256, 1525, 1639
BceAI	ACGGC	3 cut(s)	168, 1194, 1541
BciT130I	CCWGG	3 cut(s)	284, 405, 1660
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	6 cut(s)	73, 866, 952, 1225, 1286, 1332
BcuI	ACTAGT	1 cut(s)	1445
BfaI	CTAG	3 cut(s)	722, 932, 1446
BfmI	CTRYAG	5 cut(s)	108, 203, 453, 708, 1377
BfuAI	ACCTGC	1 cut(s)	1216
BglII	AGATCT	1 cut(s)	1166
BisI	GCNGC	5 cut(s)	111, 1182, 1370, 1377, 1380
BlsI	GCNGC	5 cut(s)	112, 1183, 1371, 1378, 1381
Bme1390I	CCNGG	3 cut(s)	284, 405, 1660
Bme18I	GGWCC	3 cut(s)	470, 735, 1573
BmeT110I	CYCGRG	1 cut(s)	1145
BmgT120I	GGNCC	3 cut(s)	470, 735, 1573
BmiI	GGNNCC	6 cut(s)	19, 156, 828, 1403, 1657, 1670
BmrFI	CCNGG	3 cut(s)	284, 405, 1660
BmsI	GCATC	4 cut(s)	578, 902, 1281, 1576
BpiI	GAAGAC	3 cut(s)	777, 1453, 1500
BpmI	CTGGAG	3 cut(s)	747, 1417, 1681
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	4 cut(s)	890, 976, 1087, 1415
BsaAI	YACGTR	1 cut(s)	901
BsaHI	GRCGYC	1 cut(s)	1090
BsaJI	CCNNGG	6 cut(s)	10, 93, 731, 831, 1470, 1576
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	6 cut(s)	331, 361, 850, 868, 880, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	1263, 1665, 1686
Bse1I	ACTGG	2 cut(s)	1434, 1526
Bse21I	CCTNAGG	1 cut(s)	1633
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	3 cut(s)	284, 405, 1660
BseDI	CCNNGG	6 cut(s)	10, 93, 731, 831, 1470, 1576
BseGI	GGATG	2 cut(s)	259, 1312
BseLI	CCNNNNNNNGG	3 cut(s)	1263, 1665, 1686
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	2 cut(s)	1161, 1287
BseNI	ACTGG	2 cut(s)	1434, 1526
BseRI	GAGGAG	6 cut(s)	27, 284, 336, 1177, 1678, 1685
BseSI	GKGCMC	2 cut(s)	1053, 1725
BseX3I	CGGCCG	1 cut(s)	1179
BseXI	GCAGC	4 cut(s)	122, 1363, 1381, 1391
BsgI	GTGCAG	2 cut(s)	531, 1470
Bsh1285I	CGRYCG	1 cut(s)	1182
BshFI	GGCC	6 cut(s)	32, 98, 251, 930, 1181, 1353
BshNI	GGYRCC	2 cut(s)	154, 1401
BsiEI	CGRYCG	1 cut(s)	1182
BsiHKCI	CYCGRG	1 cut(s)	1145
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	1263, 1665, 1686
BsmAI	GTCTC	6 cut(s)	73, 866, 952, 1225, 1286, 1332
BsmBI	CGTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	1644
BsnI	GGCC	6 cut(s)	32, 98, 251, 930, 1181, 1353
BsoBI	CYCGRG	1 cut(s)	1145
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	1053, 1725
Bsp1407I	TGTACA	2 cut(s)	1068, 1195
Bsp143I	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
Bsp19I	CCATGG	1 cut(s)	1576
BspACI	CCGC	4 cut(s)	600, 767, 1182, 1399
BspANI	GGCC	6 cut(s)	32, 98, 251, 930, 1181, 1353
BspCNI	CTCAG	2 cut(s)	1162, 1288
BspHI	TCATGA	2 cut(s)	297, 481
BspLI	GGNNCC	6 cut(s)	19, 156, 828, 1403, 1657, 1670
BspMAI	CTGCAG	4 cut(s)	112, 207, 457, 1381
BspMI	ACCTGC	1 cut(s)	1216
BspPI	GGATC	4 cut(s)	12, 25, 1650, 1663
BspQI	GCTCTTC	1 cut(s)	978
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	2 cut(s)	154, 1401
BsrBI	CCGCTC	1 cut(s)	1399
BsrDI	GCAATG	1 cut(s)	1275
BsrGI	TGTACA	2 cut(s)	1068, 1195
BsrI	ACTGG	2 cut(s)	1434, 1526
BssECI	CCNNGG	6 cut(s)	10, 93, 731, 831, 1470, 1576
BssMI	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
BssNI	GRCGYC	1 cut(s)	1090
BssSI	CACGAG	1 cut(s)	1603
BssT1I	CCWWGG	4 cut(s)	93, 831, 1470, 1576
Bst2BI	CACGAG	1 cut(s)	1603
Bst2UI	CCWGG	3 cut(s)	284, 405, 1660
Bst4CI	ACNGT	6 cut(s)	193, 776, 866, 994, 1133, 1406
Bst6I	CTCTTC	6 cut(s)	28, 279, 480, 658, 978, 1728
BstACI	GRCGYC	1 cut(s)	1090
BstAUI	TGTACA	2 cut(s)	1068, 1195
BstBAI	YACGTR	1 cut(s)	901
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	6 cut(s)	207, 394, 528, 567, 600, 1374
BstDEI	CTNAG	5 cut(s)	351, 1170, 1288, 1296, 1633
BstDSI	CCRYGG	2 cut(s)	731, 1576
BstENI	CCTNNNNNAGG	1 cut(s)	1663
BstF5I	GGATG	2 cut(s)	259, 1312
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	7 cut(s)	20, 216, 292, 492, 1169, 1506, 1658
BstMAI	GTCTC	6 cut(s)	73, 866, 952, 1225, 1286, 1332
BstMBI	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
BstMCI	CGRYCG	1 cut(s)	1182
BstMWI	GCNNNNNNNGC	7 cut(s)	398, 407, 532, 554, 764, 1648, 1720
BstNI	CCWGG	3 cut(s)	284, 405, 1660
BstNSI	RCATGY	2 cut(s)	845, 1188
BstSCI	CCNGG	3 cut(s)	282, 403, 1658
BstSFI	CTRYAG	5 cut(s)	108, 203, 453, 708, 1377
BstSLI	GKGCMC	2 cut(s)	1053, 1725
BstSNI	TACGTA	1 cut(s)	901
BstV1I	GCAGC	4 cut(s)	122, 1363, 1381, 1391
BstV2I	GAAGAC	3 cut(s)	777, 1453, 1500
BstX2I	RGATCY	3 cut(s)	17, 1166, 1655
BstYI	RGATCY	3 cut(s)	17, 1166, 1655
BstZI	CGGCCG	1 cut(s)	1179
Bsu36I	CCTNAGG	1 cut(s)	1633
BsuRI	GGCC	6 cut(s)	32, 98, 251, 930, 1181, 1353
BtgI	CCRYGG	2 cut(s)	731, 1576
BtsCI	GGATG	2 cut(s)	259, 1312
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 1441, 1519
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	6 cut(s)	207, 394, 528, 567, 600, 1374
CaiI	CAGNNNCTG	2 cut(s)	283, 536
CciI	TCATGA	2 cut(s)	297, 481
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	3 cut(s)	470, 735, 1573
CseI	GACGC	1 cut(s)	1098
Csp6I	GTAC	6 cut(s)	902, 1069, 1129, 1196, 1402, 1583
CviQI	GTAC	6 cut(s)	902, 1069, 1129, 1196, 1402, 1583
DdeI	CTNAG	5 cut(s)	351, 1170, 1288, 1296, 1633
DpnI	GATC	7 cut(s)	19, 215, 291, 491, 1168, 1505, 1657
DpnII	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EaeI	YGGCCR	2 cut(s)	1179, 1351
EagI	CGGCCG	1 cut(s)	1179
Eam1104I	CTCTTC	6 cut(s)	28, 279, 480, 658, 978, 1728
EarI	CTCTTC	6 cut(s)	28, 279, 480, 658, 978, 1728
EclXI	CGGCCG	1 cut(s)	1179
Eco105I	TACGTA	1 cut(s)	901
Eco130I	CCWWGG	4 cut(s)	93, 831, 1470, 1576
Eco147I	AGGCCT	1 cut(s)	930
Eco32I	GATATC	2 cut(s)	815, 1615
Eco47I	GGWCC	3 cut(s)	470, 735, 1573
Eco52I	CGGCCG	1 cut(s)	1179
Eco57I	CTGAAG	2 cut(s)	260, 1752
Eco81I	CCTNAGG	1 cut(s)	1633
Eco88I	CYCGRG	1 cut(s)	1145
EcoNI	CCTNNNNNAGG	1 cut(s)	1663
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	282, 403, 1658
EcoRV	GATATC	2 cut(s)	815, 1615
EcoT14I	CCWWGG	4 cut(s)	93, 831, 1470, 1576
EcoT22I	ATGCAT	1 cut(s)	971
ErhI	CCWWGG	4 cut(s)	93, 831, 1470, 1576
Esp3I	CGTCTC	1 cut(s)	73
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FauI	CCCGC	1 cut(s)	607
FauNDI	CATATG	2 cut(s)	427, 1216
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	1204
Fnu4HI	GCNGC	5 cut(s)	111, 1182, 1370, 1377, 1380
FokI	GGATG	2 cut(s)	246, 1319
Fsp4HI	GCNGC	5 cut(s)	111, 1182, 1370, 1377, 1380
FspBI	CTAG	3 cut(s)	722, 932, 1446
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	5 cut(s)	111, 1182, 1370, 1377, 1380
GsuI	CTGGAG	3 cut(s)	747, 1417, 1681
HaeIII	GGCC	6 cut(s)	32, 98, 251, 930, 1181, 1353
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	1098
HhaI	GCGC	1 cut(s)	760
Hin1I	GRCGYC	1 cut(s)	1090
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HinfI	GANTC	9 cut(s)	52, 182, 647, 682, 1111, 1228, 1690, 1727, 1761
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	4 cut(s)	455, 564, 681, 740
Hpy166II	GTNNAC	3 cut(s)	1205, 1441, 1583
Hpy188I	TCNGA	8 cut(s)	37, 268, 279, 543, 853, 944, 1171, 1732
Hpy8I	GTNNAC	3 cut(s)	1205, 1441, 1583
HpyAV	CCTTC	3 cut(s)	488, 761, 1019
HpyCH4III	ACNGT	6 cut(s)	193, 776, 866, 994, 1133, 1406
HpyCH4IV	ACGT	2 cut(s)	900, 1156
HpyF10VI	GCNNNNNNNGC	7 cut(s)	398, 407, 532, 554, 764, 1648, 1720
HpyF3I	CTNAG	5 cut(s)	351, 1170, 1288, 1296, 1633
HpySE526I	ACGT	2 cut(s)	900, 1156
Hsp92I	GRCGYC	1 cut(s)	1090
HspAI	GCGC	1 cut(s)	758
KpnI	GGTACC	1 cut(s)	1405
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	4 cut(s)	406, 668, 1499, 1648
Lsp1109I	GCAGC	4 cut(s)	122, 1363, 1381, 1391
LweI	GCATC	4 cut(s)	578, 902, 1281, 1576
MaeI	CTAG	3 cut(s)	722, 932, 1446
MaeII	ACGT	2 cut(s)	900, 1156
MaeIII	GTNAC	3 cut(s)	860, 1174, 1420
MalI	GATC	7 cut(s)	19, 215, 291, 491, 1168, 1505, 1657
MbiI	CCGCTC	1 cut(s)	1399
MboI	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
MflI	RGATCY	3 cut(s)	17, 1166, 1655
MhlI	GDGCHC	2 cut(s)	1053, 1725
MlsI	TGGCCA	1 cut(s)	1353
MluCI	AATT	4 cut(s)	135, 320, 411, 1310
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	1139
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	1 cut(s)	971
MroXI	GAANNNNTTC	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	1353
MseI	TTAA	3 cut(s)	1326, 1362, 1589
MslI	CAYNNNNRTG	3 cut(s)	302, 1056, 1305
Msp20I	TGGCCA	1 cut(s)	1353
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	3 cut(s)	284, 405, 1660
Mva1269I	GAATGC	1 cut(s)	1644
MvaI	CCWGG	3 cut(s)	284, 405, 1660
MwoI	GCNNNNNNNGC	7 cut(s)	398, 407, 532, 554, 764, 1648, 1720
NcoI	CCATGG	1 cut(s)	1576
NdeI	CATATG	2 cut(s)	427, 1216
NdeII	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
NlaIV	GGNNCC	6 cut(s)	19, 156, 828, 1403, 1657, 1670
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	1420
NsiI	ATGCAT	1 cut(s)	971
NspI	RCATGY	2 cut(s)	845, 1188
NspV	TTCGAA	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	1145
PagI	TCATGA	2 cut(s)	297, 481
PceI	AGGCCT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	1644
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	8 cut(s)	52, 647, 682, 1111, 1228, 1690, 1727, 1761
PfoI	TCCNGGA	1 cut(s)	1658
PkrI	GCNGC	5 cut(s)	112, 1183, 1371, 1378, 1381
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	901
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	282, 403, 1658
PspGI	CCWGG	3 cut(s)	282, 403, 1658
PspN4I	GGNNCC	6 cut(s)	19, 156, 828, 1403, 1657, 1670
PspPI	GGNCC	3 cut(s)	470, 735, 1573
PspPPI	RGGWCCY	1 cut(s)	470
PstI	CTGCAG	4 cut(s)	112, 207, 457, 1381
PstNI	CAGNNNCTG	2 cut(s)	283, 536
PsuI	RGATCY	3 cut(s)	17, 1166, 1655
RsaI	GTAC	6 cut(s)	903, 1070, 1130, 1197, 1403, 1584
RsaNI	GTAC	6 cut(s)	902, 1069, 1129, 1196, 1402, 1583
RseI	CAYNNNNRTG	3 cut(s)	302, 1056, 1305
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	3 cut(s)	1326, 1362, 1589
SatI	GCNGC	5 cut(s)	111, 1182, 1370, 1377, 1380
Sau3AI	GATC	7 cut(s)	17, 213, 289, 489, 1166, 1503, 1655
Sau96I	GGNCC	3 cut(s)	470, 735, 1573
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	284, 405, 1660
SduI	GDGCHC	2 cut(s)	1053, 1725
SfaNI	GCATC	4 cut(s)	578, 902, 1281, 1576
SfcI	CTRYAG	5 cut(s)	108, 203, 453, 708, 1377
Sfr274I	CTCGAG	1 cut(s)	1145
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	3 cut(s)	470, 735, 1573
SlaI	CTCGAG	1 cut(s)	1145
SmiMI	CAYNNNNRTG	3 cut(s)	302, 1056, 1305
SmlI	CTYRAG	5 cut(s)	869, 955, 1102, 1145, 1394
SmoI	CTYRAG	5 cut(s)	869, 955, 1102, 1145, 1394
SnaBI	TACGTA	1 cut(s)	901
SpeI	ACTAGT	1 cut(s)	1445
Sse9I	AATT	4 cut(s)	135, 320, 411, 1310
SseBI	AGGCCT	1 cut(s)	930
SsiI	CCGC	4 cut(s)	600, 767, 1182, 1399
SspMI	CTAG	3 cut(s)	722, 932, 1446
StuI	AGGCCT	1 cut(s)	930
StyD4I	CCNGG	3 cut(s)	282, 403, 1658
StyI	CCWWGG	4 cut(s)	93, 831, 1470, 1576
TaaI	ACNGT	6 cut(s)	193, 776, 866, 994, 1133, 1406
TaiI	ACGT	2 cut(s)	903, 1159
TaqI	TCGA	4 cut(s)	147, 313, 1146, 1706
TasI	AATT	4 cut(s)	135, 320, 411, 1310
TatI	WGTACW	2 cut(s)	1068, 1195
TauI	GCSGC	1 cut(s)	1184
TfiI	GAWTC	8 cut(s)	52, 647, 682, 1111, 1228, 1690, 1727, 1761
Tru1I	TTAA	3 cut(s)	1326, 1362, 1589
Tru9I	TTAA	3 cut(s)	1326, 1362, 1589
TscAI	CASTG	3 cut(s)	112, 1441, 1526
TseFI	GTSAC	1 cut(s)	1420
TseI	GCWGC	4 cut(s)	110, 1369, 1376, 1379
Tsp45I	GTSAC	1 cut(s)	1420
TspGWI	ACGGA	2 cut(s)	748, 1512
TspRI	CASTG	3 cut(s)	112, 1441, 1526
VpaK11BI	GGWCC	3 cut(s)	470, 735, 1573
XagI	CCTNNNNNAGG	1 cut(s)	1663
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	721
XceI	RCATGY	2 cut(s)	845, 1188
XhoI	CTCGAG	1 cut(s)	1145
XmiI	GTMKAC	1 cut(s)	1204
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	722, 932, 1446
Zsp2I	ATGCAT	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.