Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

1416151 .. 1418523

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1018100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATCGTTGATGCTTCTTCTCACACACCCTTGAAAAGAAGGAAGTTCAGAAGCATTGATCCCATGGAGGCCGAAGAAGCTCAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTCGGGAGAGAAATCCGTGTTTTTGAAACAACATCAGCATCTTCTTCTTCACAAAAGGAGACCGAGGATTTCTATGAGTTCACTGCAGAAGATTATTATCGGGTTTTGAATGCAAAAAAAGAAGATAAGACTCTTAAAACACGAAAGTTAAGAGAGGCAGAGAAGGCTGCCCGCAGGTCAAGGATAACAAAGACAGTGATTAGGGTTCGATTTCCTGATAATCACACATTGGAGGCCACTTTTAATCCATCAGAAACAGTTCAGAGCTTGGTCGATCTCCTCGTCAAAGTGGTTGCTCGACCAGAATTACCATTCTATATATATACCACTCCTCCGAAGAAGCAGATAAAAGACACGGCACAGGATTTTCACACTGCTGGATTTGTTCCCGGTGCAATTGTGTACTTTTCATATGGCACACCAAAAGCGGATGATGCTGCAGATGCCGTGTCAGGTCCCTTTCTTCAGGAAGAGGTCATGTCCTTGAAAGGTTTGGAACTCATCAAGAAGCATGTAGAGCCGCCTGTTCAGCCTGCACCAGAAACCACAACGGAGGCACCGCCCCCTGTTGTCCAAGAGAAGAAGCCCGAGGGGAAGAAACCTGCTAAGCCGAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

9.22

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	99 - 166	3e-07	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	276, 721
AccB1I	GGYRCC	1 cut(s)	667
AciI	CCGC	4 cut(s)	283, 539, 632, 671
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	515
AgsI	TTSAA	4 cut(s)	34, 137, 220, 598
AluBI	AGCT	3 cut(s)	80, 91, 378
AluI	AGCT	3 cut(s)	80, 91, 378
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	3 cut(s)	69, 84, 345
ApeKI	GCWGC	3 cut(s)	98, 278, 548
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	110, 265, 535
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	483, 542
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	195, 549
BfuAI	ACCTGC	2 cut(s)	276, 721
BglI	GCCNNNNNGGC	1 cut(s)	727
BisI	GCNGC	4 cut(s)	99, 279, 549, 632
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	4 cut(s)	100, 280, 550, 633
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	566
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	568, 669
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	158, 535, 544
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	63, 174, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	63, 174, 699
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	380, 432
BseXI	GCAGC	3 cut(s)	110, 265, 535
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	71, 86, 347
BshNI	GGYRCC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	71, 86, 347
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	698
Bsp143I	GATC	3 cut(s)	3, 58, 385
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	4 cut(s)	283, 539, 632, 671
BspANI	GGCC	3 cut(s)	71, 86, 347
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	568, 669
BspMAI	CTGCAG	2 cut(s)	199, 553
BspMI	ACCTGC	2 cut(s)	276, 721
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	63, 174, 699
BssMI	GATC	3 cut(s)	3, 58, 385
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	307, 370
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	283, 645
BstDEI	CTNAG	2 cut(s)	81, 717
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	3 cut(s)	6, 61, 388
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	3, 58, 385
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 275, 545, 554, 628, 640, 727
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	195, 549
BstV1I	GCAGC	3 cut(s)	110, 265, 535
BsuRI	GGCC	3 cut(s)	71, 86, 347
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	2 cut(s)	192, 483
BtsIMutI	CAGTG	3 cut(s)	192, 312, 483
BveI	ACCTGC	2 cut(s)	276, 721
Cac8I	GCNNGC	2 cut(s)	283, 645
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	3 cut(s)	64, 589, 623
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	81, 717
DpnI	GATC	3 cut(s)	5, 60, 387
DpnII	GATC	3 cut(s)	3, 58, 385
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	67, 592, 626
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	3 cut(s)	63, 588, 622
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	4 cut(s)	99, 279, 549, 632
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	99, 279, 549, 632
GluI	GCNGC	4 cut(s)	99, 279, 549, 632
HaeIII	GGCC	3 cut(s)	71, 86, 347
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	3 cut(s)	67, 592, 626
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	501
Hpy166II	GTNNAC	2 cut(s)	192, 514
Hpy188I	TCNGA	4 cut(s)	50, 364, 375, 447
Hpy188III	TCNNGA	4 cut(s)	115, 326, 578, 616
Hpy8I	GTNNAC	2 cut(s)	192, 514
HpyAV	CCTTC	2 cut(s)	33, 268
HpyCH4III	ACNGT	2 cut(s)	307, 370
HpyCH4V	TGCA	5 cut(s)	197, 224, 506, 551, 647
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 275, 545, 554, 628, 640, 727
HpyF3I	CTNAG	2 cut(s)	81, 717
Hsp92II	CATG	3 cut(s)	67, 592, 626
Kzo9I	GATC	3 cut(s)	3, 58, 385
Lsp1109I	GCAGC	3 cut(s)	110, 265, 535
LweI	GCATC	3 cut(s)	158, 535, 544
MalI	GATC	3 cut(s)	5, 60, 387
MboI	GATC	3 cut(s)	3, 58, 385
MfeI	CAATTG	1 cut(s)	507
MluCI	AATT	2 cut(s)	416, 507
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	61, 169, 259, 337, 401, 453, 577, 658, 694
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	246, 260, 354
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	7 cut(s)	77, 275, 545, 554, 628, 640, 727
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	3, 58, 385
NlaIII	CATG	3 cut(s)	67, 592, 626
NlaIV	GGNNCC	2 cut(s)	568, 669
NspI	RCATGY	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	100, 280, 550, 633
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	568, 669
PspPI	GGNCC	1 cut(s)	566
PspPPI	RGGWCCY	1 cut(s)	566
PstI	CTGCAG	2 cut(s)	199, 553
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	246, 260, 354
SatI	GCNGC	4 cut(s)	99, 279, 549, 632
Sau3AI	GATC	3 cut(s)	3, 58, 385
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	8 cut(s)	82, 93, 290, 380, 568, 588, 604, 715
SfaNI	GCATC	3 cut(s)	158, 535, 544
SfcI	CTRYAG	2 cut(s)	195, 549
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	2 cut(s)	416, 507
SsiI	CCGC	4 cut(s)	283, 539, 632, 671
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	307, 370
TaqI	TCGA	3 cut(s)	319, 384, 409
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	416, 507
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	634
Tru1I	TTAA	3 cut(s)	246, 260, 354
Tru9I	TTAA	3 cut(s)	246, 260, 354
TscAI	CASTG	3 cut(s)	199, 312, 490
TseI	GCWGC	3 cut(s)	98, 278, 548
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	2 cut(s)	116, 677
TspRI	CASTG	3 cut(s)	199, 312, 490
VpaK11BI	GGWCC	1 cut(s)	566
XceI	RCATGY	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.