Rroxscaffold_2G00078140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001373
Physical Location & Seq
Forward (+)
1549722 .. 1561494
11773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078140.1

Sequence Viewer

Length: 1326 bp
ATGGAACACCGAGCGCCGAATCTCCCACCACCCAAGTCTCCTGGCGGCTCATCATCTTCTGAAGAAGATTCTGAAGAAGGACCCTGGACCATTCTCAATCACATTCCTCCGGGTCCAGGAGAAGACCGTATGGTTCGCCAAGAAAGAGTCTTTCTTTTTCAGGGAAATCCAAGAACCGAACCCAGAGTGTTGCATCTGTTCTCCGATGGGAGTTTCAGTCTTCAGAATAAGGCTCGTCCCTCTGCATTAGACCAACTTGAATTGGTTGGGCATTCTAGAGGACAAGTCTGTTTTCGAAATCTAAGCCAGAGACAGATCTTGGTTTGGGATTTGGAAGCTCAAAGAGTAAGGAAAGTGCTTGATGATGTGACCGAGGGAGGAGAATCGTCCTATGGATTCGGGCACAGAAACGGGGGCTTATTCATGGTGGTTAGACTTGGACGCCAACCTCTATTTCACAACATGCAGGGTTACGGATACTACCTCCATACCTTTATCGAGAGAGAAAGAGAACAGTGGACCAGAGTTGAGGTTAGGTTGGAGTCTCTGTATGATTTTAGAACCAGTGGACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGTACAACGTGCTTACATTATTACATATGATTTACAGACTGAACAAGTTGGCCGCTTGGTAGCCCCTCGAGAAGATCATCTTAATAATATGGAGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTGGCTGCGTCAGTATATGTGCCTCCTGCAAATCAAGGACATTCTTATTTGCACATTTGGGTCCTCCTGAAAGAACTTGCCATGTATCATTGGCACAAGCTAGTGGCTTTGCCTTGCCATGATTATACTAGTGATGGTGAAGTGTTTGTGCCCCTAGTATTTTACTATGACAGAGAAGGTGGTGCAATCAACCTTCTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGATACCAGCCAAGAAGCGGGTTAATCCATTAGCTGATGCTGAGTTCAGGAGAGTTCCTGTACCCTCAGCCATACCTTCAGGCATGAAAATGCAGCTTGGATCCCGTAGGATGTTTCAAGCAACTCCACTTGTGAAGCCTATGGGAAACAGGGCACTTGCAGAGGACAATAACACAGATGATGATGATGATGATGAAGGCATCAGTGATGGAATCTGCTTTGGACATTGTGAGCTTACAAAATATGTTGTTGGGGCAAAAGCAAATCCTCCAAAAAATCCAAGGAGACCACTGAAGAAAGGGAATGTGATTCCGACAAACATGGTAATTGCTGCAACGAAATGTCAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

49.89

Weight (kDa)

7.3

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AciI CCGC 4 cut(s) 45, 614, 673, 991
AclWI GGATC 2 cut(s) 1068, 1081
AcoI YGGCCR 1 cut(s) 670
AcuI CTGAAG 5 cut(s) 81, 93, 206, 1035, 1286
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 2 cut(s) 624, 1035
AfiI CCNNNNNNNGG 2 cut(s) 116, 990
AgsI TTSAA 3 cut(s) 260, 736, 1091
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 3 cut(s) 40, 83, 115
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 338, 844, 1007, 1069, 1207
AluI AGCT 5 cut(s) 338, 844, 1007, 1069, 1207
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 5 cut(s) 42, 304, 549, 589, 1252
Alw44I GTGCAC 1 cut(s) 944
AlwI GGATC 2 cut(s) 1068, 1081
Ama87I CYCGRG 1 cut(s) 687
AoxI GGCC 2 cut(s) 670, 724
ApaLI GTGCAC 1 cut(s) 944
ApeKI GCWGC 3 cut(s) 749, 1066, 1304
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 724, 805
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 628, 893
AsuII TTCGAA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 687
AvaII GGWCC 6 cut(s) 80, 87, 113, 519, 569, 805
BaeGI GKGCMC 4 cut(s) 405, 897, 948, 1129
BamHI GGATCC 1 cut(s) 1073
BauI CACGAG 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 129, 212
Bbv12I GWGCWC 1 cut(s) 948
BbvCI CCTCAGC 1 cut(s) 1039
BbvI GCAGC 3 cut(s) 736, 1078, 1291
BccI CCATC 3 cut(s) 200, 872, 1175
BciT130I CCWGG 3 cut(s) 42, 85, 117
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 5 cut(s) 42, 304, 549, 589, 1252
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 4 cut(s) 276, 845, 873, 899
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 580
BfuI GTATCC 1 cut(s) 470
BglII AGATCT 1 cut(s) 315
BisI GCNGC 5 cut(s) 46, 673, 750, 1067, 1305
BlsI GCNGC 5 cut(s) 47, 674, 751, 1068, 1306
Bme1390I CCNGG 4 cut(s) 42, 85, 111, 117
Bme18I GGWCC 6 cut(s) 80, 87, 113, 519, 569, 805
BmeT110I CYCGRG 1 cut(s) 687
BmgT120I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 724, 805
BmiI GGNNCC 4 cut(s) 82, 114, 806, 1075
BmrFI CCNGG 4 cut(s) 42, 85, 111, 117
BmsI GCATC 3 cut(s) 202, 1000, 1182
BpiI GAAGAC 2 cut(s) 129, 212
Bpu10I CCTNAGC 1 cut(s) 1039
Bpu14I TTCGAA 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 442
BsaI GGTCTC 2 cut(s) 589, 1252
BsaJI CCNNGG 4 cut(s) 83, 372, 727, 1253
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 990
Bse1I ACTGG 3 cut(s) 564, 611, 750
BseBI CCWGG 3 cut(s) 42, 85, 117
BseDI CCNNGG 4 cut(s) 83, 372, 727, 1253
BseGI GGATG 1 cut(s) 1089
BseLI CCNNNNNNNGG 2 cut(s) 116, 990
BseMII CTCAG 3 cut(s) 602, 1005, 1053
BseNI ACTGG 3 cut(s) 564, 611, 750
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 4 cut(s) 405, 897, 948, 1129
BseXI GCAGC 3 cut(s) 736, 1078, 1291
BseYI CCCAGC 1 cut(s) 721
BshFI GGCC 2 cut(s) 672, 726
BsiHKAI GWGCWC 1 cut(s) 948
BsiHKCI CYCGRG 1 cut(s) 687
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 116, 990
BsmAI GTCTC 5 cut(s) 42, 304, 549, 589, 1252
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 672, 726
Bso31I GGTCTC 2 cut(s) 589, 1252
BsoBI CYCGRG 1 cut(s) 687
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 4 cut(s) 405, 897, 948, 1129
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 3 cut(s) 315, 694, 1073
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 4 cut(s) 45, 614, 673, 991
BspANI GGCC 2 cut(s) 672, 726
BspCNI CTCAG 3 cut(s) 601, 1006, 1052
BspLI GGNNCC 4 cut(s) 82, 114, 806, 1075
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 1068, 1081
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 2 cut(s) 589, 1252
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 3 cut(s) 564, 611, 750
BssECI CCNNGG 4 cut(s) 83, 372, 727, 1253
BssMI GATC 3 cut(s) 315, 694, 1073
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 941
BssT1I CCWWGG 2 cut(s) 727, 1253
Bst2BI CACGAG 1 cut(s) 941
Bst2UI CCWGG 3 cut(s) 42, 85, 117
Bst4CI ACNGT 2 cut(s) 128, 516
BstACI GRCGYC 1 cut(s) 442
BstAUI TGTACA 1 cut(s) 622
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 302, 588, 1014, 1039
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 1 cut(s) 1089
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 318, 697, 1076
BstMAI GTCTC 5 cut(s) 42, 304, 549, 589, 1252
BstMBI GATC 3 cut(s) 315, 694, 1073
BstNI CCWGG 3 cut(s) 42, 85, 117
BstNSI RCATGY 2 cut(s) 466, 601
BstSCI CCNGG 4 cut(s) 40, 83, 109, 115
BstSLI GKGCMC 4 cut(s) 405, 897, 948, 1129
BstV1I GCAGC 3 cut(s) 736, 1078, 1291
BstV2I GAAGAC 2 cut(s) 129, 212
BstX2I RGATCY 2 cut(s) 315, 1073
BstYI RGATCY 2 cut(s) 315, 1073
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 672, 726
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 1 cut(s) 1089
BtsIMutI CAGTG 4 cut(s) 521, 571, 1183, 1262
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 599
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 724, 805
CseI GACGC 2 cut(s) 450, 741
Csp6I GTAC 2 cut(s) 623, 1034
CviAII CATG 8 cut(s) 424, 463, 598, 728, 826, 863, 1057, 1294
CviQI GTAC 2 cut(s) 623, 1034
DdeI CTNAG 4 cut(s) 302, 588, 1014, 1039
DpnI GATC 3 cut(s) 317, 696, 1075
DpnII GATC 3 cut(s) 315, 694, 1073
EaeI YGGCCR 1 cut(s) 670
Eco130I CCWWGG 2 cut(s) 727, 1253
Eco31I GGTCTC 2 cut(s) 589, 1252
Eco47I GGWCC 6 cut(s) 80, 87, 113, 519, 569, 805
Eco57I CTGAAG 5 cut(s) 81, 93, 206, 1035, 1286
Eco88I CYCGRG 1 cut(s) 687
EcoO109I RGGNCCY 2 cut(s) 80, 805
EcoRII CCWGG 3 cut(s) 40, 83, 115
EcoT14I CCWWGG 2 cut(s) 727, 1253
ErhI CCWWGG 2 cut(s) 727, 1253
FaeI CATG 8 cut(s) 427, 466, 601, 731, 829, 866, 1060, 1297
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 222
FatI CATG 8 cut(s) 423, 462, 597, 727, 825, 862, 1056, 1293
FauI CCCGC 1 cut(s) 984
FauNDI CATATG 2 cut(s) 646, 972
Fnu4HI GCNGC 5 cut(s) 46, 673, 750, 1067, 1305
FokI GGATG 1 cut(s) 1096
Fsp4HI GCNGC 5 cut(s) 46, 673, 750, 1067, 1305
FspBI CTAG 4 cut(s) 276, 845, 873, 899
GlaI GCGC 1 cut(s) 15
GluI GCNGC 5 cut(s) 46, 673, 750, 1067, 1305
GsaI CCCAGC 1 cut(s) 725
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 2 cut(s) 672, 726
HapII CCGG 1 cut(s) 110
HgaI GACGC 2 cut(s) 450, 741
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 8 cut(s) 427, 466, 601, 731, 829, 866, 1060, 1297
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 8 cut(s) 19, 68, 147, 383, 396, 542, 1185, 1282
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 628, 893
Hpy166II GTNNAC 5 cut(s) 519, 569, 623, 743, 946
Hpy188I TCNGA 6 cut(s) 61, 73, 205, 225, 591, 1287
Hpy188III TCNNGA 5 cut(s) 276, 499, 689, 811, 1021
Hpy8I GTNNAC 5 cut(s) 519, 569, 623, 743, 946
HpyAV CCTTC 5 cut(s) 71, 914, 947, 1059, 1163
HpyCH4III ACNGT 2 cut(s) 128, 516
HpyCH4IV ACGT 1 cut(s) 628
HpyF3I CTNAG 4 cut(s) 302, 588, 1014, 1039
HpySE526I ACGT 1 cut(s) 628
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 8 cut(s) 427, 466, 601, 731, 829, 866, 1060, 1297
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 315, 694, 1073
Lsp1109I GCAGC 3 cut(s) 736, 1078, 1291
LweI GCATC 3 cut(s) 202, 1000, 1182
MaeI CTAG 4 cut(s) 276, 845, 873, 899
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 2 cut(s) 367, 470
MalI GATC 3 cut(s) 317, 696, 1075
MboI GATC 3 cut(s) 315, 694, 1073
MboII GAAGA 8 cut(s) 48, 74, 77, 86, 134, 212, 704, 1279
MflI RGATCY 2 cut(s) 315, 1073
MhlI GDGCHC 4 cut(s) 405, 897, 948, 1129
MluCI AATT 3 cut(s) 260, 1299, 1319
MlyI GAGTC 2 cut(s) 156, 551
MmeI TCCRAC 2 cut(s) 519, 1310
MseI TTAA 3 cut(s) 702, 996, 1324
MslI CAYNNNNRTG 1 cut(s) 1061
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 4 cut(s) 42, 85, 111, 117
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 3 cut(s) 42, 85, 117
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 727
NdeI CATATG 2 cut(s) 646, 972
NdeII GATC 3 cut(s) 315, 694, 1073
NlaIII CATG 8 cut(s) 427, 466, 601, 731, 829, 866, 1060, 1297
NlaIV GGNNCC 4 cut(s) 82, 114, 806, 1075
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 466, 601
NspV TTCGAA 1 cut(s) 295
PaeI GCATGC 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 687
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 6 cut(s) 19, 68, 383, 396, 1185, 1282
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 5 cut(s) 47, 674, 751, 1068, 1306
PleI GAGTC 2 cut(s) 155, 550
PpsI GAGTC 2 cut(s) 155, 550
PpuMI RGGWCCY 2 cut(s) 80, 805
Psp5II RGGWCCY 2 cut(s) 80, 805
Psp6I CCWGG 3 cut(s) 40, 83, 115
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 3 cut(s) 40, 83, 115
PspN4I GGNNCC 4 cut(s) 82, 114, 806, 1075
PspPI GGNCC 7 cut(s) 80, 87, 113, 519, 569, 724, 805
PspPPI RGGWCCY 2 cut(s) 80, 805
PsuI RGATCY 2 cut(s) 315, 1073
RsaI GTAC 2 cut(s) 624, 1035
RsaNI GTAC 2 cut(s) 623, 1034
RseI CAYNNNNRTG 1 cut(s) 1061
SaqAI TTAA 3 cut(s) 702, 996, 1324
SatI GCNGC 5 cut(s) 46, 673, 750, 1067, 1305
Sau3AI GATC 3 cut(s) 315, 694, 1073
Sau96I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 724, 805
SchI GAGTC 2 cut(s) 156, 551
ScrFI CCNGG 4 cut(s) 42, 85, 111, 117
SduI GDGCHC 4 cut(s) 405, 897, 948, 1129
SfaNI GCATC 3 cut(s) 202, 1000, 1182
Sfr274I CTCGAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 6 cut(s) 80, 87, 113, 519, 569, 805
SlaI CTCGAG 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
SpeI ACTAGT 1 cut(s) 872
SphI GCATGC 1 cut(s) 601
Sse9I AATT 3 cut(s) 260, 1299, 1319
SsiI CCGC 4 cut(s) 45, 614, 673, 991
SspMI CTAG 4 cut(s) 276, 845, 873, 899
StyD4I CCNGG 4 cut(s) 40, 83, 109, 115
StyI CCWWGG 2 cut(s) 727, 1253
TaaI ACNGT 2 cut(s) 128, 516
TaiI ACGT 1 cut(s) 631
TaqI TCGA 3 cut(s) 295, 498, 688
TaqII GACCGA 1 cut(s) 386
TasI AATT 3 cut(s) 260, 1299, 1319
TatI WGTACW 1 cut(s) 622
TauI GCSGC 2 cut(s) 48, 675
TfiI GAWTC 6 cut(s) 19, 68, 383, 396, 1185, 1282
Tru1I TTAA 3 cut(s) 702, 996, 1324
Tru9I TTAA 3 cut(s) 702, 996, 1324
TscAI CASTG 4 cut(s) 521, 571, 1183, 1269
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 3 cut(s) 749, 1066, 1304
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 412, 1073, 1182
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 4 cut(s) 521, 571, 1183, 1269
VneI GTGCAC 1 cut(s) 944
VpaK11BI GGWCC 6 cut(s) 80, 87, 113, 519, 569, 805
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 2 cut(s) 466, 601
XhoI CTCGAG 1 cut(s) 687
XspI CTAG 4 cut(s) 276, 845, 873, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.