Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

70061261 .. 70063836

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0575700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCGCCTTGGACGTCAACCATCTCCAAGCGATCTCGGATTATCCTGACCCGCGTTACAATTACACCTTCTGGGAATCTGGGTGTTATTGAGGTGAAATGCATGGCGGTCAGTATGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCTGGAAGGGAAGCCAGTAACTTCTGAGATATTTCAGCGGCAGGCACATGCTGAGAGTGTAAATCGTGAATTTGAGAATCTCCTTGATGAGGACACCGCAAGGGATATTCGGAAGAAGGCTCCTGGTGTGGTGGTTATTGATGACCATACAGCTAATAACTTCCCTACACCTTTGGAGGTGTCAAACAAAGATGATGTTGCGGTTGGCAGAATCAGCCGTGATGTGTCCCAGGAGGGGAACAGTGGGTTGGACATCTTTGTCTGCGGTGATCAAAAATGCAAGGGAGCTGTACTTAATGCTGTTCAGATTGCTGAGCTGTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

168

Amino Acids

18.24

Weight (kDa)

5.08

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dhC	PF02774	75 - 151	2.6e-08	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AatII	GACGTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	54
AciI	CCGC	7 cut(s)	5, 52, 107, 217, 276, 380, 444
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	268, 414
AjnI	CCWGG	2 cut(s)	301, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	137, 157, 332, 467, 496
AluI	AGCT	5 cut(s)	137, 157, 332, 467, 496
ApeKI	GCWGC	5 cut(s)	125, 137, 140, 143, 163
ApoI	RAATTY	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	106, 458
BbvI	GCAGC	5 cut(s)	112, 124, 127, 130, 175
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	2 cut(s)	303, 410
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	7 cut(s)	5, 126, 138, 141, 144, 164, 218
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	7 cut(s)	6, 127, 139, 142, 145, 165, 219
Bme1390I	CCNGG	2 cut(s)	303, 410
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	303, 410
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	8, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 414
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	303, 410
BseDI	CCNNGG	2 cut(s)	8, 408
BseLI	CCNNNNNNNGG	2 cut(s)	268, 414
BseMII	CTCAG	3 cut(s)	195, 222, 483
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	5 cut(s)	112, 124, 127, 130, 175
Bsh1236I	CGCG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	268, 414
BsmFI	GGGAC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	32, 448
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	7 cut(s)	5, 52, 107, 217, 276, 380, 444
BspCNI	CTCAG	3 cut(s)	196, 223, 484
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	8, 408
BssMI	GATC	2 cut(s)	32, 448
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	303, 410
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	204, 231, 492
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	35, 451
BstMBI	GATC	2 cut(s)	32, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 143, 163, 393
BstNI	CCWGG	2 cut(s)	303, 410
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	301, 408
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	112, 124, 127, 130, 175
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	3 cut(s)	103, 173, 227
CviJI	RGCY	9 cut(s)	125, 137, 157, 193, 299, 332, 396, 467, 496
CviKI_1	RGCY	9 cut(s)	125, 137, 157, 193, 299, 332, 396, 467, 496
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	3 cut(s)	204, 231, 492
DpnI	GATC	2 cut(s)	34, 450
DpnII	GATC	2 cut(s)	32, 448
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	301, 408
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	106, 176, 230
FaiI	YATR	7 cut(s)	104, 116, 149, 174, 228, 327, 505
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	102, 172, 226
FauI	CCCGC	1 cut(s)	59
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	5, 126, 138, 141, 144, 164, 218
Fsp4HI	GCNGC	7 cut(s)	5, 126, 138, 141, 144, 164, 218
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	7 cut(s)	5, 126, 138, 141, 144, 164, 218
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	106, 176, 230
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	76, 256, 390
HphI	GGTGA	2 cut(s)	106, 458
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	39, 205, 291, 486
Hpy188III	TCNNGA	4 cut(s)	46, 173, 182, 245
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	78, 179, 289
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	102, 459
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 143, 163, 393
HpyF3I	CTNAG	3 cut(s)	204, 231, 492
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	106, 176, 230
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	32, 448
LmnI	GCTCC	3 cut(s)	134, 304, 464
Lsp1109I	GCAGC	5 cut(s)	112, 124, 127, 130, 175
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	55, 196
MalI	GATC	2 cut(s)	34, 450
MboI	GATC	2 cut(s)	32, 448
MboII	GAAGA	1 cut(s)	304
MluCI	AATT	2 cut(s)	60, 248
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	85, 169, 262, 349, 406
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	303, 410
MvaI	CCWGG	2 cut(s)	303, 410
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	134, 143, 163, 393
NdeII	GATC	2 cut(s)	32, 448
NlaIII	CATG	3 cut(s)	106, 176, 230
NlaIV	GGNNCC	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	230
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	76, 256, 390
PkrI	GCNGC	7 cut(s)	6, 127, 139, 142, 145, 165, 219
Psp6I	CCWGG	2 cut(s)	301, 408
PspGI	CCWGG	2 cut(s)	301, 408
PspN4I	GGNNCC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	7 cut(s)	5, 126, 138, 141, 144, 164, 218
Sau3AI	GATC	2 cut(s)	32, 448
ScrFI	CCNGG	2 cut(s)	303, 410
SfcI	CTRYAG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	60, 248
SsiI	CCGC	7 cut(s)	5, 52, 107, 217, 276, 380, 444
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	301, 408
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	17
TasI	AATT	2 cut(s)	60, 248
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	2 cut(s)	7, 220
TfiI	GAWTC	3 cut(s)	76, 256, 390
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	5 cut(s)	125, 137, 140, 143, 163
TspRI	CASTG	1 cut(s)	427
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	129
ZraI	GACGTC	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.